BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04038.1
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484308 jgi|Araly1|484308|fgenesh2_kg.5__300__AT2G04038.1 778 0.0
Ahg920239 jgi|Araly1|920239|scaffold_101520.1 294 3e-79
> Ahg484308 jgi|Araly1|484308|fgenesh2_kg.5__300__AT2G04038.1
Length=498
Score = 778 bits (421), Expect = 0.0
Identities = 476/502 (95%), Gaps = 5/502 (1%)
Strand=Plus/Plus
Query 1 ATGATTCCGGCAGAAATCAACGGATATTTCCAATATCTATCACCGGAATACAACGTAATA 60
|||||| |||| ||||||| ||||||||||||||||||| ||||||||||| || |||||
Sbjct 1 ATGATTTCGGCGGAAATCACCGGATATTTCCAATATCTACCACCGGAATACCACATAATA 60
Query 61 AACATGCCTTCATCTCCAACCTCTTCCTTAAACTACCTAAACGATTTGATCATCAACAAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AACATGCCTTCATCTCCAACCTCTTCCTTAAACTACCTAAACGATTTGATCAT---CAAC 117
Query 121 AACAACTATTCCTCATCATCCAACAGTCAAGATCTCATGATAAGCAACAACTCAACTTCC 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 118 AACAACTATTCCTCATCATCCAACAGTCAAGATCTCATGATGAGCAACAACTCAACTTCC 177
Query 181 GACGAAGATCATCATCAAAGCATCATGGTACTCGACGAGAGGAAACAGAGAAGGATGCTT 240
|||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 178 GACGAAGATCATCATCAAAGCATCGTAATACTCGACGAGAGGAAACAAAGAAGGATGCTT 237
Query 241 TCGAACAGAGAATCTGCAAGGAGGTCAAGGATGAGGAAACAGAGACATCTTGATGAAC-T 299
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 238 TCAAACAGAGAATCTGCAAGGAGGTCGAGGATGAGGAAACAGAGACATCTTGACGAACTT 297
Query 300 CTGGTCTCAGGTAATAAGGCTTCGCAACGAGAACAACTGTCTTATCGATAAGCTGAACCG 359
| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 298 CAGG-CTCAGGTAATAAGGCTTCGTAACGAGAACAACTGTCTTATCGATAAGCTGAACCA 356
Query 360 CGTATCGGAGACTCAAAATTGTGTATTGAAGGAGAACTCTAAACTCAAAGAAGAAGCTTC 419
||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AGTATCTGAGACTCAAGATAGTGTATTGAAGGAGAACTCTAAACTCAAAGAAGAAGCTTC 416
Query 420 TGATCTCCGACAGCTTGTTTGTGAACTGAAATCTAACAAGAACAACAACAATAGTTTTCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGATCTCCGACAGCTTGTTTGTGAACTGAAATCTAACAAGAACAACAACAATAGTTTTCC 476
Query 480 AAGAGAGTTTGAAGATAATTAG 501
||||||||||||||||||||||
Sbjct 477 AAGAGAGTTTGAAGATAATTAG 498
> Ahg920239 jgi|Araly1|920239|scaffold_101520.1
Length=632
Score = 294 bits (159), Expect = 3e-79
Identities = 357/449 (80%), Gaps = 28/449 (6%)
Strand=Plus/Plus
Query 61 AACATGCCTTCATCTCCAAC--C-TCTTC--C-TTAAACTACCTAAACGATTTGATCATC 114
||||||||||| ||||| || | ||||| | || || |||| |||| |||| |||
Sbjct 117 AACATGCCTTCTTCTCCTACTTCTTCTTCTACATTCTACCACCTCAACGGTTTG---ATC 173
Query 115 AACAACAACAACTATTCCTCATCATCCAACAGTCAAGATCTCATGATAAGCAACAACTCA 174
||||||||||| || || ||||||| ||| |||| ||||| |||| ||||||||||||
Sbjct 174 AACAACAACAAGTACTCTTCATCATTCAATGGTCAGGATCTAATGACGAGCAACAACTCA 233
Query 175 ACTTCCGACGAAGATCATCATCAAAGCATCATGGTAC-TCGACGAGAGGAAACAGAGAAG 233
||||| ||||| ||||| || ||||| | ||||| | |||| ||||||||||| |||||
Sbjct 234 ACTTCAGACGACGATCACCAACAAAG--T-ATGGT-CATCGATGAGAGGAAACAAAGAAG 289
Query 234 GATGCTTTCGAACAGAGAATCTGCAAGGAGGTCAAGGATGAGGAAA-CAGAGACATCTTG 292
||| | || ||||| |||||||| | ||||||||||||| |||| ||||||||||| |
Sbjct 290 AATGATCTCTAACAGGGAATCTGCTCGTAGGTCAAGGATGA-GAAAGCAGAGACATCTCG 348
Query 293 ATGAACTCTGGTCTCAGGT-AATAAGGCTTCGCAAC-GAGAACAACTGTCTTATCGATAA 350
|||| || |||||||| || || ||| |||||| || || ||| ||||||||||||||||
Sbjct 349 ATGAGCTTTGGTCTCAAGTGAA-AAGACTTCGC-ACTGATAACTACTGTCTTATCGATAA 406
Query 351 GCTGAACCGCGTATCGGAGA-CTCAAAAT-TGTGTATTGAAGGAGAACTCTAAACTCAAA 408
||||||||||||||| || | | || | | || || ||||||||| |||| || |||
Sbjct 407 GCTGAACCGCGTATCTGAAAGC-CATGAGCT-TGCCTTAAAGGAGAACGCTAAGCTTAAA 464
Query 409 GAAGAAGCTTCTGATCTCCGACAGCTTGTTTGTGA-ACTGAAATCTAACAA-GAACAACA 466
|| ||| ||||||||||| |||||||| | | ||| | | || || ||||| ||| | |
Sbjct 465 GAGGAAACTTCTGATCTCAGACAGCTTATCTCTGAGATT-AAGTCAAACAACGAAGA-CG 522
Query 467 ACAATAGTTTTCCAAGAGAGTTTGAAGAT 495
|||| ||||||| ||||||| | ||||||
Sbjct 523 ACAACAGTTTTCTAAGAGAGCTCGAAGAT 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18200215953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5