BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04041.1
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936212 jgi|Araly1|936212|scaffold_500403.1 381 2e-105
Ahg346899 jgi|Araly1|346899|fgenesh1_pg.C_scaffold_5000291 377 3e-104
Ahg928921 jgi|Araly1|928921|scaffold_301378.1 219 2e-56
Ahg913770 jgi|Araly1|913770|Al_scaffold_0001_4024 196 9e-50
> Ahg936212 jgi|Araly1|936212|scaffold_500403.1
Length=514
Score = 381 bits (206), Expect = 2e-105
Identities = 384/467 (82%), Gaps = 24/467 (5%)
Strand=Plus/Plus
Query 1 ATGGCAAAGTCTTTTCTCATGGTAATGCTCGCATCCATGGTAATGTTTTACATGGCTTGT 60
|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||
Sbjct 21 ATGGCAAAGTCTTTTCTCATGGTAATGCTCATATCCATAGTAATGTTTTCCATGGCTCGT 80
Query 61 CCAATTTACTCCCAGAAAA---AT--ATAT-CAGAAG--ATAT-A---GA--CA----TA 102
|||||||| ||||| |||| || |||| || ||| ||| | || || ||
Sbjct 81 CCAATTTATTCCCAAAAAATTGATCCATATTCACAAGGGATACCAAAAGAAGCAGACATA 140
Query 103 GCTCCAACTTCAGTGGAAGGGGCTGATTTACCCACAACAGAGTATGAGATAGAGCTTGCT 162
|||||||| || |||||| ||||||| ||| ||||| || | ||||||||||||||||
Sbjct 141 TCTCCAACTCCATTGGAAGTAGCTGATTCACCTACAACGGAATCTGAGATAGAGCTTGCT 200
Query 163 CACCGTTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAAATGTGAT 222
|||| ||| ||| |||| |||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 201 CACCATTTGCATAAAGAGTATATTCTTGCTTGCCCTAAAAAGCCGAGTCCCAAATGCGAA 260
Query 223 GATGAGATTTTCAATAACATGATGGATGGGACGACACCAGTGACA-AGTGAATGTTGTCG 281
|||||||||||||| |||||| |||||| |||||| ||||||||| | ||||||||||||
Sbjct 261 GATGAGATTTTCAACAACATGTTGGATGAGACGACGCCAGTGACAGA-TGAATGTTGTCG 319
Query 282 TGATATATTGAAGACTGGTAAAGATTGTCATCTTGCATTGGTTAAAATTGTATTCTCCAC 341
|||| | ||||| ||||| |||||||| || |||||| |||| ||||| ||||||| ||
Sbjct 320 TGATGTTTTGAATACTGGCAAAGATTGCCACCTTGCAATGGTAAAAATCATATTCTCTAC 379
Query 342 GGATGGGTATAAAAGTAAAGCATCCAGAG-CAATTCCAAAAAGTAAACAGACATGGAATG 400
||| ||||||| || ||||| | || | |||||||||||||||||| ||||||| |
Sbjct 380 ATATGACTATAAAAATATTGCATCTA-AGGCTATTCCAAAAAGTAAACAGGCATGGAACG 438
Query 401 ATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCCCCGGTCACTTT 446
||||| ||||||||||||| | | ||||||||| |||||| ||||
Sbjct 439 ATTGTATCCGTAGAGTTGGCAAC-ACGATTGGTGCTCCGGTCTCTTT 484
> Ahg346899 jgi|Araly1|346899|fgenesh1_pg.C_scaffold_5000291
Length=474
Score = 377 bits (204), Expect = 3e-104
Identities = 380/462 (82%), Gaps = 24/462 (5%)
Strand=Plus/Plus
Query 1 ATGGCAAAGTCTTTTCTCATGGTAATGCTCGCATCCATGGTAATGTTTTACATGGCTTGT 60
|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||
Sbjct 1 ATGGCAAAGTCTTTTCTCATGGTAATGCTCATATCCATAGTAATGTTTTCCATGGCTCGT 60
Query 61 CCAATTTACTCCCAGAAAA---AT--ATAT-CAGAAG--ATAT-A---GA--CA----TA 102
|||||||| ||||| |||| || |||| || ||| ||| | || || ||
Sbjct 61 CCAATTTATTCCCAAAAAATTGATCCATATTCACAAGGGATACCAAAAGAAGCAGACATA 120
Query 103 GCTCCAACTTCAGTGGAAGGGGCTGATTTACCCACAACAGAGTATGAGATAGAGCTTGCT 162
|||||||| || |||||| ||||||| ||| ||||| || | ||||||||||||||||
Sbjct 121 TCTCCAACTCCATTGGAAGTAGCTGATTCACCTACAACGGAATCTGAGATAGAGCTTGCT 180
Query 163 CACCGTTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAAATGTGAT 222
|||| ||| ||| |||| |||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 181 CACCATTTGCATAAAGACTATATTCTTGCTTGCCCTAAAAAGCCGAGTCCCAAATGCGAA 240
Query 223 GATGAGATTTTCAATAACATGATGGATGGGACGACACCAGTGACA-AGTGAATGTTGTCG 281
|||||||||||||| |||||| |||||| || ||| ||||||||| | ||||||||||||
Sbjct 241 GATGAGATTTTCAACAACATGTTGGATGAGATGACGCCAGTGACAGA-TGAATGTTGTCG 299
Query 282 TGATATATTGAAGACTGGTAAAGATTGTCATCTTGCATTGGTTAAAATTGTATTCTCCAC 341
|||| ||||||| ||||| |||||||| ||||| ||| |||||||||| ||||||| ||
Sbjct 300 TGATGTATTGAATACTGGCAAAGATTGCCATCTCGCAATGGTTAAAATCATATTCTCTAC 359
Query 342 GGATGGGTATAAAAGTAAAGCATCCAGAG-CAATTCCAAAAAGTAAACAGACATGGAATG 400
||| || |||| || ||||| | || | |||||||| ||||||||||||||||| |
Sbjct 360 ATATGACTACAAAAATATTGCATCTA-AGGCTATTCCAAAGAGTAAACAGACATGGAACG 418
Query 401 ATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCCCCGGTC 441
||||| ||||||||||||| | | ||||||||| ||||||
Sbjct 419 ATTGTATCCGTAGAGTTGGCAAC-ACGATTGGTGCTCCGGTC 459
> Ahg928921 jgi|Araly1|928921|scaffold_301378.1
Length=562
Score = 219 bits (118), Expect = 2e-56
Identities = 226/276 (82%), Gaps = 16/276 (6%)
Strand=Plus/Plus
Query 189 GGCTTGCCCTAAAAAGCCGAG-TTCCAAATG-TGATGATGAGATTTTCAATAACATGATG 246
||||||| || |||||||||| | ||||| || |||||| ||||||| |||||| ||
Sbjct 273 GGCTTGCGCTGAAAAGCCGAGCGT-AAAATGCGGA-GATGAGGTTTTCAAGAACATGTTG 330
Query 247 GATGGGACGACACCAGTGACAAG-TGAATGTTGTCGTGATATATTGAAGACT-GGTAAAG 304
|||| ||| || ||| | || || |||||||||||||||||||||||||| | || ||||
Sbjct 331 GATGAGACTACGCCAATTAC-AGATGAATGTTGTCGTGATATATTGAAGA-TGGGCAAAG 388
Query 305 ATTGTCATCTTGCATTGGTTAAAATTGTATTCTCCACGGATGGGTATAA-AAGTAAAGCA 363
|||||||||| | |||||||||||| ||||| ||||| ||| ||||| || || |||
Sbjct 389 ATTGTCATCTCGGATTGGTTAAAATCATATTCGCCACGTATGAATATAAGAA-TATTGCA 447
Query 364 TC-CAGAGCAATTCCAAAAAGTAAACAGACATGGAATGATTGTGTCCGTAGAGTTGGGAT 422
|| || | |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 448 TCTAAG-GGTATTCCAAATAGTAAACAAACATGGAATGATTGTGTCCGTAGAGTTGGGA- 505
Query 423 GGA-GATTGGTGCCCCGGTCACTTTTGAAGCA-TAA 456
| | ||||||||| ||||| |||| || ||| |||
Sbjct 506 GCAAGATTGGTGCTCCGGTTTCTTTGGA-GCAGTAA 540
> Ahg913770 jgi|Araly1|913770|Al_scaffold_0001_4024
Length=405
Score = 196 bits (106), Expect = 9e-50
Identities = 221/275 (80%), Gaps = 14/275 (5%)
Strand=Plus/Plus
Query 189 GGCTTGCCCTAAAAAGCCGAGTTCCAAATG-TGATGATGAGATTTTCAATAACATGATGG 247
||||||| || | |||||||| | ||||| || ||||| ||||||| |||||| |||
Sbjct 138 GGCTTGCGCTGACAAGCCGAGCACAAAATGCGGA-AATGAGGTTTTCAAGAACATGTTGG 196
Query 248 ATGGGACGACACCAGTGACAAG-TGAATGTTGTCGTGATATATTGAAGACT-GGTAAAGA 305
||| |||||| ||| | || || || ||||||||||||||||||||||| | || |||||
Sbjct 197 ATGAGACGACGCCAATTAC-AGATGCATGTTGTCGTGATATATTGAAGA-TGGGAAAAGA 254
Query 306 TTGTCATCTTGCATTGGTTAAAATTGTATTCTCCACGGATGGGTATAA-AAGTAAAGCAT 364
||| ||||||| ||||||| |||| ||||| ||||| ||| || ||| || | |||
Sbjct 255 TTGCCATCTTGGATTGGTTCAAATCATATTCGCCACGTATGAGTTTAAGAA-TTTTTCAT 313
Query 365 C-CAGAGCAATTCCAAAAAGTAAACAGACATGGAATGATTGTGTCCGTAGAGTTGGGATG 423
| || | ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 314 CTAAG-GGTATTCCGAAAAGTAAACAAACATGGAATGATTGTGTCCGTAGAGTTGGGAAC 372
Query 424 GAGATTGGTGCCCCGG-TCACTTTTGAAGCA-TAA 456
|||||||||| |||| | ||||||| ||| |||
Sbjct 373 AAGATTGGTGCTCCGGATT-CTTTTGA-GCAGTAA 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16483214448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5