BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G04045.1

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg896386 jgi|Araly1|896386|Al_scaffold_0005_352                     444    3e-124


> Ahg896386 jgi|Araly1|896386|Al_scaffold_0005_352
Length=336

 Score =  444 bits (240),  Expect = 3e-124
 Identities = 306/338 (91%), Gaps = 4/338 (1%)
 Strand=Plus/Plus

Query  26   ATGGCATCAAAAATCACATTCGTCTTCCTCGTTGTTGTCGTTATCAATTGTGCGATGAT-  84
            ||||||||||||||||||||| ||||| || ||| | |||||||| ||||||||||||| 
Sbjct  1    ATGGCATCAAAAATCACATTCTTCTTCTTCATTGCTCTCGTTATCGATTGTGCGATGATG  60

Query  85   GTTGAGTATGCCA-ACAGCAGAAGCTCATAACTTTCTTCCTTGCGTTATAACGAATGATT  143
            ||| | || | || |||||||||||||| | ||||||||||||||| | |||||| ||||
Sbjct  61   GTT-ACTACG-CAGACAGCAGAAGCTCAGATCTTTCTTCCTTGCGTGACAACGAAAGATT  118

Query  144  GTGAATACCATCACTGCTCAAGCGGGACAGTTCTATGTGTAAACAGACAATGCCATTGTA  203
            ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct  119  GTGAATACCTTCACTGCTCAAGCGGGACAGCTCTATGTGTAAACAGACAATGCCAATGTA  178

Query  204  GTCGTTCATCAACTCATCAAACAAAACTCGACAACTTAAAGAAGATGGACTATGCGAAGA  263
            | |||||||| | ||||||||| ||||||||||||||||||| |||||||| ||| ||||
Sbjct  179  GCCGTTCATCGATTCATCAAACCAAACTCGACAACTTAAAGACGATGGACTCTGCTAAGA  238

Query  264  AGTGCAAGTGGACAAAAGATTGTGATCCTCGTATGAGATTTACATGTGTCTCCGGTTCTT  323
            |||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  239  AGTGCAAGTGGACACAGGATTGTGATCCTCGTATGAGATTTACATGCGTCTCCGGTTCTT  298

Query  324  ATATGTGTTTTGATGGCCTATGTACGTGTACCAATTAA  361
            ||||||||||||||||||||||||| ||||| ||||||
Sbjct  299  ATATGTGTTTTGATGGCCTATGTACTTGTACGAATTAA  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834569435


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5