BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G04046.1

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg322693 jgi|Araly1|322693|fgenesh1_pm.C_scaffold_5000237           300    5e-81


> Ahg322693 jgi|Araly1|322693|fgenesh1_pm.C_scaffold_5000237
Length=363

 Score =  300 bits (162),  Expect = 5e-81
 Identities = 192/207 (93%), Gaps = 0/207 (0%)
 Strand=Plus/Plus

Query  127  CTTCCCTGCTTGGGAAGGCCACCTCTATGTATAAATGGACAATGCAAATGCACCACTACA  186
            |||||||||| |||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct  157  CTTCCCTGCTAGGGAAGGCCACCTCTATGTATAAAGGGACAATGCAAATGCACCGCTTCA  216

Query  187  TTGACACATCAAGCAAAACTCGATAACTTAAGGACAATGAATGATGCTAAGACATGCAAG  246
            ||||| ||||||| ||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct  217  TTGACTCATCAAGAAAAACTCGATAACCTAAGGAAAATGAATGATGCTAAGACATGCAAG  276

Query  247  TACACGAGTGATTGTGATCCACGTATGAGATATTCTTGTGTCTCGGGATCTTATATATGT  306
             | ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct  277  CAGACGAGTGATTGCGATCCTCGTATGAGATATTCTTGTGTCTCGGGATCTTTTATATGT  336

Query  307  TTGAATGGTTTTTGTACTTGTACGTAG  333
            |||||||| |||||||||||||| |||
Sbjct  337  TTGAATGGCTTTTGTACTTGTACCTAG  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11790077001


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5