BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04046.1 Length=333 Score E Sequences producing significant alignments: (Bits) Value Ahg322693 jgi|Araly1|322693|fgenesh1_pm.C_scaffold_5000237 300 5e-81 > Ahg322693 jgi|Araly1|322693|fgenesh1_pm.C_scaffold_5000237 Length=363 Score = 300 bits (162), Expect = 5e-81 Identities = 192/207 (93%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 127 CTTCCCTGCTTGGGAAGGCCACCTCTATGTATAAATGGACAATGCAAATGCACCACTACA 186 |||||||||| |||||||||||||||||||||||| |||||||||||||||||| || || Sbjct 157 CTTCCCTGCTAGGGAAGGCCACCTCTATGTATAAAGGGACAATGCAAATGCACCGCTTCA 216 Query 187 TTGACACATCAAGCAAAACTCGATAACTTAAGGACAATGAATGATGCTAAGACATGCAAG 246 ||||| ||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 217 TTGACTCATCAAGAAAAACTCGATAACCTAAGGAAAATGAATGATGCTAAGACATGCAAG 276 Query 247 TACACGAGTGATTGTGATCCACGTATGAGATATTCTTGTGTCTCGGGATCTTATATATGT 306 | ||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 277 CAGACGAGTGATTGCGATCCTCGTATGAGATATTCTTGTGTCTCGGGATCTTTTATATGT 336 Query 307 TTGAATGGTTTTTGTACTTGTACGTAG 333 |||||||| |||||||||||||| ||| Sbjct 337 TTGAATGGCTTTTGTACTTGTACCTAG 363 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11790077001 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5