BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G04047.1

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936218 jgi|Araly1|936218|scaffold_500409.1                        198    1e-50


> Ahg936218 jgi|Araly1|936218|scaffold_500409.1
Length=268

 Score =  198 bits (107),  Expect = 1e-50
 Identities = 143/160 (89%), Gaps = 3/160 (2%)
 Strand=Plus/Plus

Query  73   TGCAATGATGGTGAGTATTCTGACAGGGGACGCTC-GAATTTTCCTCCTTGCAAAACAAA  131
            |||| ||||||||||||||| ||||| ||| |||| || ||||| |||||||||||||||
Sbjct  71   TGCATTGATGGTGAGTATTCCGACAGCGGAAGCTCAGATTTTTCTTCCTTGCAAAACAAA  130

Query  132  CAAAGATTGCAAATATCTTCACTGCTCGAGCGAGACACCTCTATGTGT-ATGGAGACAAT  190
            |||||||||  ||||| ||||||||||||||| ||||||| ||||| | || ||||||||
Sbjct  131  CAAAGATTGTGAATATTTTCACTGCTCGAGCGGGACACCTTTATGTATCAT-GAGACAAT  189

Query  191  ACACATGTACCATTTCATCGACTCATCAAGCGAAATTTGA  230
             |||||||||||||||||||||||||||||||||| ||||
Sbjct  190  GCACATGTACCATTTCATCGACTCATCAAGCGAAACTTGA  229



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8057723071


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5