BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04070.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319239 jgi|Araly1|319239|fgenesh1_pm.C_scaffold_3002255 2050 0.0
Ahg930722 jgi|Araly1|930722|scaffold_303179.1 1869 0.0
Ahg480060 jgi|Araly1|480060|fgenesh2_kg.3__2761__AT2G04040.1 1666 0.0
> Ahg319239 jgi|Araly1|319239|fgenesh1_pm.C_scaffold_3002255
Length=1431
Score = 2050 bits (1110), Expect = 0.0
Identities = 1329/1436 (93%), Gaps = 10/1436 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAGCCATTTCTTCCGCAAGATGAGCAGATAGTCCCCTGTAAAGCCACATGG-AA 59
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1 ATGGAAGAGCCATTTCTTCCGGAAGATGAGCAGCTAGTCCCCTGTAAAGCCACATGGCAA 60
Query 60 AAGTGGTCAGCTCAATGTCGAGCTGAAGAAAGTGAGCCGCTTGGCTGTTCCTATGGCCAC 119
|| |||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 61 AA-TGGTCAGCTCAACGTCGAGCTGAAGAAAGTGAGCCGCTTGGCCGCTCCAATGGCCAC 119
Query 120 CGTGACCATTGCACAGTACTTATTGCCAGTCATCTCAGTCATGGTCGCTGGCCACAACGG 179
|||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 120 CGTGACCATTGCTCAGTACTTATTGCCTGTCATCTCAGTCATGGTCGCCGGTCACAACGG 179
Query 180 CGAGCTCCAGCTCTCCGGTGTCGCTCTTGCTACCTCCTTCACAAATGTCTCCGGTTTCAG 239
|||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 180 CGAGCTCCAGCTGTCCGGTGTCGCTCTTGCCACATCCTTCACAAACGTCTCCGGTTTCAG 239
Query 240 CATTATGTTTGGGTTAGTGGGTTCACTAGAAACTCTTTCTGGCCAAGCTTATGGAGCCAA 299
|||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct 240 CATTATGTATGGGTTAGTGGGTGCACTAGAAACACTTTGTGGCCAAGCTTATGGAGCCAA 299
Query 300 ACAATACGAAAAAATGGGAACCTATACATACTCCGCAATTTCCTCTAACATCCCTATATG 359
||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||| ||
Sbjct 300 ACAATACGAAAAACTCGGAACCTATACATACTCTGCAATTGCCTCTAACATCCCTATTTG 359
Query 360 TGTCCTCATATCAATTCTCTGGATATACATGGAAAAACTCTTGATCTCTCTCGGACAAGA 419
|||||||||||||||||||||||| ||||| ||||| || || ||||||||||| |||||
Sbjct 360 TGTCCTCATATCAATTCTCTGGATTTACATCGAAAAGCTATTAATCTCTCTCGGTCAAGA 419
Query 420 CCCTGACATCTCCAGAGTCGCTGGCTCCTACGCCTTGCGGCTCATACCGACTTTGTTTGC 479
||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 420 CCCTGACATCTCCAGAGTCGCTGGCTCATACGCCTTGTGGCTCATACCGGCTTTGTTTGC 479
Query 480 CCATGCGATTGTCTTACCACTGACCCGGTTTCTGCTAGCACAAGGGTTGGTTCTTCCACT 539
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 480 TCATGCGATTGTCATACCACTGACCCGGTTTCTACTAGCACAAGGGTTGGTTCTTCCCCT 539
Query 540 GCTTTACTTTGCCCTGACCACCCTTTTGTTCCACATTGCGGTTTGCTGGACTTTGGTTTC 599
||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 GCTCTACTCTGCACTGACCACCCTTTTGTTCCACATGGCGGTTTGCTGGACTTTGGTTTC 599
Query 600 CGCACTTGGTTTGGGAAGCAATGGAGCTGCCTTGGCTATTAGTGTGTCTTTCTGGTTTTT 659
||| |||||| |||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 600 CGCGCTTGGTCTGGGAAGCAATGGAGCTGCCCTAGCTATTAGTGTGTCTTTCTGGTTTTA 659
Query 660 CGCTATGACACTCTCATGTTATGTGAGATTCTCCAGCTCTTGCGAGAAGACTCGCCGATT 719
|||| ||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||
Sbjct 660 CGCTGTGATTCTCTCATGTTATGTGAGATCCTCCAGCTCTTGTGAGAAGACTCGCGGATT 719
Query 720 TGTATCCCAAGATTTCTTGTCTTCTGTCAAGCAGTTCTTCCGTTATGGAGTCCCATCAGC 779
||||||| |||| || |||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 720 TGTATCCGGAGATATCGTGTCTTCTGTCAAGCAGTTCTTCCATTACGGAGTCCCATCAGC 779
Query 780 GGCAATGCTTTGCCTAGAATGGTGGCTATTTGAGCTACTTATACTCTGTTCAGGTCTTCT 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CGCAATGCTTTGCCTAGAATGGTGGCTATTTGAGCTACTTATACTCTGTTCAGGTCTTCT 839
Query 840 CCAAAACCCAAAACTCGAGACCTCTGTTCTTTCAATTTGTCTTACAACAGCAACTTTGCA 899
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 CCCGAACCCAAAACTCGAGACCTCTGTTCTTTCTATTTGTCTTACAACAGCAACTTTGCA 899
Query 900 CTATGTGATTCCAGTTGGAGTCGCGGCCGCTGTGAGCACACGCGTGTCAAACAAATTGGG 959
|||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||
Sbjct 900 CTATGTGATTCCAGTTGGAGTCGCAGCGGCTGTTAGCACACGTGTGTCAAACAAATTGGG 959
Query 960 AGCTGGGATTCCTCAAGTTGCTAGGGTTTCAGTATTGGCAGGGCTTTGTCTCTGGCTTGT 1019
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 AGCTGGAAATCCTCAAGTTGCTAGGGTTTCAGTATTGGCAGGGCTTTGTCTCTGGCTGGT 1019
Query 1020 AGAGTCATCTTTCTTTAGCATACTTCTCTTCGCCTTCAGGAACATCATAGGCTACGCATT 1079
||||||| |||||||||||| |||||||||| | | ||||||||||||||||||||||||
Sbjct 1020 AGAGTCAGCTTTCTTTAGCACACTTCTCTTCACATGCAGGAACATCATAGGCTACGCATT 1079
Query 1080 CAGCAACAGTAAAGAAGTTGTGGACTATGTGGCTGATCTATCTCCTTTGCTCTGTCTCTC 1139
||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1080 CAGCAACAGCAAAGAAGTTGTGGACTATGTGGCTGACCTAACTCCTTTGCTCTGTCTCTC 1139
Query 1140 CTTTGTTCTTGACGGATTTACCGCAGTTCTTAATGGGGTTGCCAGGGG-ATGTGGTTGGC 1198
||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 1140 CTTTGTTCTCGACGGATTTACCGCAGTTCTTAATGGGGTTGCTAGGGGCA-GTGGTTGGC 1198
Query 1199 AACACATTGGAGCTTTGAACAACGTAGT-AGCTTATTATCTCGTAGGAGCTCCGGTTGGA 1257
| |||||||||||||||||||| || || |||||||||| ||||||| || |||||||||
Sbjct 1199 AGCACATTGGAGCTTTGAACAATGT-GTTAGCTTATTATATCGTAGGTGCCCCGGTTGGA 1257
Query 1258 ATATATTTAGCTTTCAGTTGTGAGTTGAACGGAAAAGGACTATGGTGTGGTGTAGTGGTT 1317
| || |||||||||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1258 GTTTACTTAGCTTTCAGTCGTGAGTTGAACGGAAAAGGACTTTGGTGTGGTGTTGTGGTT 1317
Query 1318 GGATCCGCTGTGCAAGCCATTATACTGGCTATT-GTCACG-GCTTCCATGAATTGGAAGG 1375
||||||||||||||||||||||||||| || || ||||| | |||||| ||||||||||
Sbjct 1318 GGATCCGCTGTGCAAGCCATTATACTGTCT-TTCGTCACATG-TTCCATAAATTGGAAGG 1375
Query 1376 AACAGGCCAAGAAGGCAAGGAAGAGACTAATCTCAAGTGAAAATGGATTGGCTTAA 1431
||||||| ||||||| ||||||||| ||||||||| |||||||||||||||||||
Sbjct 1376 AACAGGCTGAGAAGGCTAGGAAGAGAATAATCTCAACTGAAAATGGATTGGCTTAA 1431
> Ahg930722 jgi|Araly1|930722|scaffold_303179.1
Length=1471
Score = 1869 bits (1012), Expect = 0.0
Identities = 1314/1460 (90%), Gaps = 19/1460 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAGCCATTTCTTCCGCAAGATGAGCAGA-TAGT-CCCCTGTAAAGCCACATGGA 58
||||||||||||||||||| |||||||||||| | | | ||||||||||||||||||||
Sbjct 21 ATGGAAGAGCCATTTCTTCTGCAAGATGAGCA-ACT-TTCCCCCTGTAAAGCCACATGGA 78
Query 59 AAAGTGGTCAGCTCAATGTCGAGCTGAAGAAAGTGAGCCGCTTGGCTGTTCCTATGGCCA 118
||||||||||| | | ||||||||||||||||||||| ||||||| | ||||||||||
Sbjct 79 AAAGTGGTCAGGTTACCGTCGAGCTGAAGAAAGTGAGCAGCTTGGCCGCTCCTATGGCCG 138
Query 119 CCGTGACCATTGCACAGTACTTATTGCCAGTCATCTCAGTCATGGTCGCTGGCCACAACG 178
||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 139 CCGTGACCATTGCTCAGTACTTATTGCCTGTCATTTCAGTCATGGTCGCTGGCCACAATG 198
Query 179 GCGAGCTCCAGCTCTCCGGTGTCGCTCTTGCTACCTCCTTCACAAATGTCTCCGGTTTCA 238
| ||||||||||||||||| ||||||||||| |||||||||||||| || ||||| ||||
Sbjct 199 GTGAGCTCCAGCTCTCCGGCGTCGCTCTTGCAACCTCCTTCACAAACGTTTCCGGGTTCA 258
Query 239 GCATTATGTTTGGGTTAGTGGGTTCACTAGAAACTCTTTCTGGCCAAGCTTATGGAGCCA 298
| ||| |||||||||||| |||| | ||||||||||||| ||||||||||||||||||||
Sbjct 259 GTATTTTGTTTGGGTTAGCGGGTGCCCTAGAAACTCTTTGTGGCCAAGCTTATGGAGCCA 318
Query 299 AACAATACGAAAAAATGGGAACCTATACATACTCCGCAA-TTTCCTCTAACATCCCTATA 357
|||||||||||||||| |||||||| |||||||| |||| | |||||||||||||||
Sbjct 319 AACAATACGAAAAAATCGGAACCTACACATACTCTGCAACGGT-CTCTAACATCCCTATT 377
Query 358 TGTGTCCTCATATCAATTCTCTGGATATACATGGAAAAACTCTTGATCTCTCTCGGACAA 417
|||||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||| |||
Sbjct 378 TGTGTCCTCATATCAATTCTATGGATTTACATCGAAAAGCTCTTAATCTCTCTCGGTCAA 437
Query 418 GACCCTGACATCTCCAGAGTCGCTGGCTCCTACGCCTTGCGGCTCATACCGACTTTGTTT 477
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 438 GACCCTGACATCTCCAGAGTTGCTGGCTCCTACGCCTTTTGGCTCATACCGGCTTTGTTC 497
Query 478 GCCCATGCGATTGTCTTACCACTGACCCGGTTTCTGCTAGCACAAGGGTTGGTTCTTCCA 537
|| |||||| || || |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 498 GCACATGCGTTTTTCATACCACTGACTCGGTTTCTGCTAGCACAAGGGTTGGTTCTTCCC 557
Query 538 CTGCTTTACTTTGCCCTGACCACCCTTTTGTTCCACATTGCGGTTTGCTGGACTTTGGTT 597
||||| |||| | |||||||||| |||||||||||||| | |||||||||||||| |||
Sbjct 558 CTGCTCTACTCTACCCTGACCACTCTTTTGTTCCACATCCCTGTTTGCTGGACTTTTGTT 617
Query 598 TCCGCACTTGGTTTGGGAAGCAATGGAGCTGCCTTGGCTATTAGTGTGTCTTTCTGGTTT 657
| ||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 618 TTCGCGCTTGGTCTGGGAAGCAATGGAGCTGCCATGGCTATTAGTGTGTCTTTCTGGTTT 677
Query 658 T-TCGCTATGACACTCTCATGTTATGTGAGATTCTCCAGCTCTTGCGAGAAGACTCGCCG 716
| | | | ||| ||||||||||||||||| ||||||||||| ||||| |||||||| ||
Sbjct 678 TAT-GTTGTGATTCTCTCATGTTATGTGAGGTTCTCCAGCTCCTGCGACAAGACTCG-CG 735
Query 717 -ATTTGTATCCCA-AGATTTCTTGTCTTCTGTCAAGCAGTTCTTCCGTTAT-GGAGTCCC 773
|||||||| ||| |||||| |||||| | ||| ||||||||||| || | ||||||||
Sbjct 736 TATTTGTAT-CCAGTGATTTCGTGTCTTGTATCAGGCAGTTCTTCCATT-TCGGAGTCCC 793
Query 774 ATCAGCGGCAATGCTTTGCCTAGAATGGTGGCTATTTGAGCTACTTATACTCTGTTCAGG 833
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 794 ATCCGCGGCAATGCTTTGCCTAGAATGGTGGCTGTTTGAGCTACTTATACTCTGCTCAGG 853
Query 834 TCTTCTCCAAAACCCAAAACTCGAGACCTCTGTTCTTTCAATTTGTCTTACAACAGCAAC 893
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 854 TCTTCTCCTAAACCCAAAACTCGAAACCTCTGTTCTTTCAATTTGTCTTACAACAGCAAG 913
Query 894 TTTGCACTATGTGATTCCAGTTGGAGTCGCGGCCGCTGTGAGCACACGCGTGTCAAACAA 953
||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||||
Sbjct 914 TTTGCACTATGTGATCCCAGCTGGAGTCGCGGCGGCTGTGAGCACACGTGTGTCAAACAA 973
Query 954 ATTGGGAGCTGGGATTCCTCAAGTTGCTAGGGTTTCAGTATTGGCAGGGCTTTGTCTCTG 1013
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 ATTGGGAGCTGGAAATCCTCAAGTTGCTAGGGTTTCAGTATTGGCAGGGCTTTGTCTCTG 1033
Query 1014 GCTTGTAGAGTCA-TCTTTCTTTAGCATACTTCTCTTCGCCTTCAGGAACATCATAGGCT 1072
||| ||||| ||| | ||||| || || |||||||||| ||| | |||||||||||||||
Sbjct 1034 GCTGGTAGAATCAGT-TTTCTCTACCACACTTCTCTTCACCTGCCGGAACATCATAGGCT 1092
Query 1073 ACGCATTCAGCAACAGTAAAGAAGTTGTGGACTATGTGGCTGATCTATCTCCTTTGCTCT 1132
||||||| |||||||| |||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1093 ACGCATTTAGCAACAGCAAAGAAGTTGTGGACTATGTGGCTGACCTAACTCCTTTGCTCT 1152
Query 1133 GTCTCTCCTTTGTTCTTGACGGATTTACCGCAGTTCTTAATGGGGTTGCCAGGGGATGTG 1192
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 1153 GTCTCTCCTTTGTTCTCGACGGATTTACCGCAGTTCTTAATGGTGTTGCTAGGGGAAGTG 1212
Query 1193 GTTGGCAACACATTGGAGCTTTGAACAACGTAGTAGCTTATTATCTCGTAGGAGCTCCGG 1252
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1213 GTTGGCAACACATTGGAGCTTTGAACAATGTGGTAGCTTATTATCTCGTAGGAGCTCCGG 1272
Query 1253 TTGGAATATATTTAGCTTTCAGTTGTGAGTTGAACGGAAAAGGACTATGGTGTGGTGTAG 1312
||||| | || |||||||| | | ||||||| |||||||||||||| ||||| ||||| |
Sbjct 1273 TTGGAGTTTACTTAGCTTTTAATCGTGAGTTTAACGGAAAAGGACTCTGGTGCGGTGTTG 1332
Query 1313 TGGTTGGATCCGCTGTGCAAGCCATTATACTGGCTATTGTCACG-GCTTCCATGAATTGG 1371
|||| ||||||||||||||||||||||||||| || ||||||| | |||||| ||||||
Sbjct 1333 TGGTCGGATCCGCTGTGCAAGCCATTATACTGTCTTTTGTCACATG-TTCCATAAATTGG 1391
Query 1372 AAGGAACAGGCCAAGAAGGCAAGGAAGAGACTAATCTCAAGTGAAAATGGATTGGCTT-A 1430
||||||||||| ||||||| ||||||||| ||||||| | ||||||| ||||||||| |
Sbjct 1392 AAGGAACAGGCTGAGAAGGCTAGGAAGAGAATAATCTCGACTGAAAATAGATTGGCTTGA 1451
Query 1431 AAGAATGGTGTTTCTGAGAG 1450
||||| ||||||||||||||
Sbjct 1452 AAGAAGGGTGTTTCTGAGAG 1471
> Ahg480060 jgi|Araly1|480060|fgenesh2_kg.3__2761__AT2G04040.1
Length=1483
Score = 1666 bits (902), Expect = 0.0
Identities = 1294/1483 (87%), Gaps = 27/1483 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGAGCCATTTCTTCCGCA-AGATGAGCAGATAGTCCCCTGTAAAGCCACATGGAA 59
||||||||||||||||||||| | ||| |||| ||||||||| | || ||||||| |
Sbjct 5 ATGGAAGAGCCATTTCTTCCG-AGAGACGAGCTTCTAGTCCCCTCTCCAGTCACATGGCA 63
Query 60 AAGTGGTCAGCTCAA-TGTCGAGCTGAAGAAAGTGAGCCGCTTGGCTGTTCCTATGGCCA 118
|| ||| | || |||||||| |||||| ||||||||||||| | |||||||||||
Sbjct 64 AACAAATCA-ATTAACCGTCGAGCTAAAGAAACTGAGCCGCTTGGCCGCTCCTATGGCCA 122
Query 119 CCGTGACCATTGCACAGTACTTATTGCCAGTCATCTCAGTCATGGTCGCTGGCCACAACG 178
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 123 CCGTGACCATTGCTCAGTACTTATTGCCTGTCATCTCAGTCATGGTCGCTGGCCACAACG 182
Query 179 GCGAGCTCCAGCTCTCCGGTGTCGCTCTTGCTACCTCCTTCACAAATGTCTCCGGTTTCA 238
|||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||
Sbjct 183 GCGAGCTCCAGCTCTCCGGTGTGGCTCTTGCAACCTCCTTCACAAACGTCACCGGTTTCA 242
Query 239 GCATTATGTTTGGGTTAGTGGGTTCACTAGAAACTCTTTCTGGCCAAGCTTATGGAGCCA 298
||||||||| ||| ||||||||| |||| |||||||||| ||||||||||||||||||||
Sbjct 243 GCATTATGTGTGGATTAGTGGGTGCACTTGAAACTCTTTGTGGCCAAGCTTATGGAGCCA 302
Query 299 AACAATACGAAAAAATGGGAACCTATACATACTCCGCAATTTCCTCTAACATCCCTATAT 358
|||||||||| ||||| ||||| || ||||||| |||||| | || ||||| | || |
Sbjct 303 AACAATACGACAAAATCGGAACTTACGCATACTCTGCAATTGCTTCCAACATAACAATTT 362
Query 359 GTGTCCTCATATCAATTCTCTGGATATACATGGAAAA-ACTCTTGATCT-CTCTCGGACA 416
|| |||||||||||||||||||| | ||||| ||||| | ||||||| | |||| |||||
Sbjct 363 GTTTCCTCATATCAATTCTCTGGCTTTACATTGAAAAGA-TCTTGAT-TGCTCTAGGACA 420
Query 417 AGACCCTGACATCTCCAGAGTCGCTGGCTCCTACGCCTTGCGGCTCATACCGACTTTGTT 476
||||||||| || || ||| ||||||||||||||||||| |||||||||||||||| ||
Sbjct 421 AGACCCTGAAATTTCAAGAATCGCTGGCTCCTACGCCTTTTGGCTCATACCGACTTTATT 480
Query 477 TGCCCATGCGATTGTCTTACCACTGACCCGGTTTCTGCTAG-CACAAGGGTTGGTTCTTC 535
| ||| ||||||||| |||||||| ||||||||||||| | ||||||||||||||||||
Sbjct 481 CGGCCAAGCGATTGTCATACCACTGTCCCGGTTTCTGCT-GACACAAGGGTTGGTTCTTC 539
Query 536 CACTGCT-TTACTTTGCCCTGACCACCCTTTTGTTCCACATTGCGGTTTGCTGGACTTTG 594
| ||||| || | |||| |||| ||||||||||||||| || ||||| |||||||||
Sbjct 540 CTCTGCTCTT-CACTGCCGTGACTACCCTTTTGTTCCACGTTTTTGTTTGTTGGACTTTG 598
Query 595 GTTTCCGCACTTGGTTTGGGAAGCAATGGAGCTGCCTTGGCTATTAGTGTGTCTTTCTGG 654
|||| | ||||| ||||||| |||||| ||||| |||||| ||||||||||||||||
Sbjct 599 GTTTTCTTGTTTGGTCTGGGAAGTAATGGACCTGCCATGGCTACTAGTGTGTCTTTCTGG 658
Query 655 TTTTTCGCTATGACACTCTCATGTTATGTGAGATTCTCCAGCTCTTGCGAGAAGACTCGC 714
|||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 TTTTACGCTGTGATACTCTCATGTTATGTGAAATTCTCCAGCTCTTGCGAGAAGACTCGC 718
Query 715 CGATTTGTATCCCAAGATTTCT-TGTCTTCTGTCAAGCAGTTCTTCCGTTATGGAGTCCC 773
||||||||||| || |||| | |||||||| ||||||||||||||| || ||| ||||
Sbjct 719 GGATTTGTATCCGAAAATTT-TGTGTCTTCTATCAAGCAGTTCTTCCAATACGGAATCCC 777
Query 774 ATCAGCGGCAATGCTTTGCCTAGAATGGTGGCTATTTGAGCTACTTATACTCTGTTCAGG 833
|||||| |||||| |||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct 778 ATCAGCTGCAATGATTTGCCTAGAATGGTGGCTATTTGAGATACTCATACTCTGCTCAGG 837
Query 834 TCTTCTCCAAAACCCAAAACTCGAGACCTCTGTTCTTTCAATTTGTCTTACAACAGCAAC 893
|||||||| ||||| ||||||||||||||||||||||| || |||||||||| || |||
Sbjct 838 TCTTCTCCCTAACCCGAAACTCGAGACCTCTGTTCTTTCCATATGTCTTACAATAGAAAC 897
Query 894 TTTGCACTATGTGATTCCAGTTGGAGTCGCGGCCGCTGTGAGCACACGCGTGTCAAACAA 953
|||||||||||||||| ||| ||||||||| || |||||||||||||| || ||||||||
Sbjct 898 TTTGCACTATGTGATTGCAGCTGGAGTCGCTGCGGCTGTGAGCACACGTGTATCAAACAA 957
Query 954 ATTGGGAGCTGGGATTCCTCAAGTTGCTAGGGTTTCAGTATTGGCAGGGCTTTGTCTCTG 1013
||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 958 TTTGGGAGCTGGGAATCCTCAAGTTGCTAGGGTTTCAGTATTAGCAGGGCTCTGTCTCTG 1017
Query 1014 GCTTGTAGAGTCATCTTTCTTTAGCATACTTCTCTTCGCCTTCAGGAACATCATAGGCTA 1073
| | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GATAGTAGAATCAGCTTTCTTTAGCATACTTCTCTTCGCCTTCAGGAACATCATAGGCTA 1077
Query 1074 CGCATTCAGCAACAGTAAAGAAGTTGTGGACTATGTGGCTGATCT-ATCTCCTTTGCTCT 1132
||||||||||||||| ||||||||| |||||||||| ||||| || | ||||||||||||
Sbjct 1078 CGCATTCAGCAACAGCAAAGAAGTTTTGGACTATGTCGCTGACCTGA-CTCCTTTGCTCT 1136
Query 1133 GTCTCTCCTTTGTTCTT-GACGGATTTACCGCAGTTCTTAATGGGGTTGCCAGGGGATGT 1191
||||||| ||| || | ||||| || || |||||||||||||||||||| || ||| ||
Sbjct 1137 GTCTCTC-TTTCATCCTCGACGGCTTCACAGCAGTTCTTAATGGGGTTGCTAGAGGAAGT 1195
Query 1192 GGTTGGCAACACATTGGAGCTTTGAACAA--CGTAGTAGCTTATTATCTCGTAGGAGCTC 1249
|| ||||||||||||||||||| |||||| | | || |||||||||||||||||||||
Sbjct 1196 GGGTGGCAACACATTGGAGCTTGGAACAATAC-T-GTTTCTTATTATCTCGTAGGAGCTC 1253
Query 1250 CGGTTGGAATATATTTAGCTTTCAGT-TGTGAGTTGAACGGAAAAGGACTATGGTGTGGT 1308
| |||||||| || |||||||||||| | || |||||||||||||||||| ||||| |||
Sbjct 1254 CTGTTGGAATTTACTTAGCTTTCAGTCT-TGGGTTGAACGGAAAAGGACTTTGGTGCGGT 1312
Query 1309 GTAGTGGTTGGATCCGCTGTGCAAGCCATTATACTGGCTATTGTCACGGCTTCCATGAAT 1368
|| ||||||||||| |||| ||||| | |||||||||||||||||| ||||||| |||
Sbjct 1313 GTTGTGGTTGGATCTACTGTACAAGCTACTATACTGGCTATTGTCACAACTTCCATAAAT 1372
Query 1369 TGGAAGGAACAGGCCAAGAAGGCAAGGAAGAGACTA-ATCTCAAGTGAAAATGGATTGGC 1427
|||||||||||||| ||||||| ||||||||| || | ||||| ||||||| |||||||
Sbjct 1373 TGGAAGGAACAGGCTGAGAAGGCTAGGAAGAGAATAGA-CTCAACTGAAAATAGATTGGC 1431
Query 1428 TTAAAGAA-TGGTGTTTCTGAGAGCTATCTCAAACTATTTGTA 1469
||||| || || ||||||| | || ||||||||||||||||||
Sbjct 1432 TTAAACAAATGATGTTTCTCATAGTTATCTCAAACTATTTGTA 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5