BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04080.1
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319239 jgi|Araly1|319239|fgenesh1_pm.C_scaffold_3002255 1757 0.0
Ahg930722 jgi|Araly1|930722|scaffold_303179.1 1718 0.0
Ahg480060 jgi|Araly1|480060|fgenesh2_kg.3__2761__AT2G04040.1 1570 0.0
Ahg342751 jgi|Araly1|342751|fgenesh1_pg.C_scaffold_3002514 625 4e-178
> Ahg319239 jgi|Araly1|319239|fgenesh1_pm.C_scaffold_3002255
Length=1431
Score = 1757 bits (951), Expect = 0.0
Identities = 1280/1440 (89%), Gaps = 18/1440 (1%)
Strand=Plus/Plus
Query 95 ATGGAAGAGCCATTTCTTCC-GAGAGACGAGCAGTTAGTCTCTTGTAAATCCACATGGCA 153
|||||||||||||||||||| || ||| |||||| ||||| | |||||| ||||||||||
Sbjct 1 ATGGAAGAGCCATTTCTTCCGGA-AGATGAGCAGCTAGTCCCCTGTAAAGCCACATGGCA 59
Query 154 AAGTGGTCAGGTCACCGTCGAGCTGAAGAAAGTGAGCCGCTTGGCCGCTCCTATGGCCAC 213
|| ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 AAATGGTCAGCTCAACGTCGAGCTGAAGAAAGTGAGCCGCTTGGCCGCTCCAATGGCCAC 119
Query 214 CGTAACCATAGCTCAGTACTTATTGCCTGTCATCTCAGTCATGGTCGCCGGCCACATCGG 273
||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 120 CGTGACCATTGCTCAGTACTTATTGCCTGTCATCTCAGTCATGGTCGCCGGTCACAACGG 179
Query 274 CGAGTTGGAGCTCG-CCGGTGTCGCGCTTGCCACGTCTTTCACAAACGTTTCCGGCTTCA 332
|||| | |||| | |||||||||| |||||||| || ||||||||||| ||||| ||||
Sbjct 180 CGAGCTCCAGCT-GTCCGGTGTCGCTCTTGCCACATCCTTCACAAACGTCTCCGGTTTCA 238
Query 333 GCATAATGTTTGGGTTAGTTGGTGCATTGGAAACTCTTTGTGGCCAAGCCTATGGAG-CA 391
|||| |||| ||||||||| |||||| | ||||| |||||||||||||| ||||||| ||
Sbjct 239 GCATTATGTATGGGTTAGTGGGTGCACTAGAAACACTTTGTGGCCAAGCTTATGGAGCCA 298
Query 392 GAACAATACGAAAAAATCGGAACCTATACATACTCTGCAATGGCTTCCAACATACCAATT 451
|||||||||||||| ||||||||||||||||||||||||| || || ||||| || |||
Sbjct 299 -AACAATACGAAAAACTCGGAACCTATACATACTCTGCAATTGCCTCTAACATCCCTATT 357
Query 452 TGTTTCATCATATCAATTCTATGGATTTACATCGAAAAGCTCTTGATCACTCTCGGGCAA 511
||| || ||||||||||||| |||||||||||||||||||| || ||| ||||||| |||
Sbjct 358 TGTGTCCTCATATCAATTCTCTGGATTTACATCGAAAAGCTATTAATCTCTCTCGGTCAA 417
Query 512 GAGCCTGACATCTCTAGAGTCGCTGGCTCCTACTCATTGTGGCTCGTACCGGCTTTGTTT 571
|| ||||||||||| |||||||||||||| ||| | ||||||||| ||||||||||||||
Sbjct 418 GACCCTGACATCTCCAGAGTCGCTGGCTCATACGCCTTGTGGCTCATACCGGCTTTGTTT 477
Query 572 GCCCATGCTATTTTCTTACCACTGACTCGGTTTCTGCTAGCACAAGGGTTGGTTATTTCC 631
|| ||||| ||| || |||||||||| |||||||| |||||||||||||||||| || ||
Sbjct 478 GCTCATGCGATTGTCATACCACTGACCCGGTTTCTACTAGCACAAGGGTTGGTTCTTCCC 537
Query 632 CTGCTATACTCTGCCA-TGACCACCCTTTTGTTCCATATTGCGGTTTGCTGGACTTTGGT 690
||||| ||||||| || ||||||||||||||||||| || ||||||||||||||||||||
Sbjct 538 CTGCTCTACTCTG-CACTGACCACCCTTTTGTTCCACATGGCGGTTTGCTGGACTTTGGT 596
Query 691 TTTCGCGCTTGGTCTTGGAAGCAATGGAGCTGCTATTGCTATTAGTTTGTCTTTCTGGTT 750
|| |||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 597 TTCCGCGCTTGGTCTGGGAAGCAATGGAGCTGCCCTAGCTATTAGTGTGTCTTTCTGGTT 656
Query 751 TTACGCTGTGATACTCTCATGTCATGTGAGATTTTTCAGCTCTTGCGAGAAGACTCGCGG 810
|||||||||||| ||||||||| ||||||||| | ||||||||| ||||||||||||||
Sbjct 657 TTACGCTGTGATTCTCTCATGTTATGTGAGATCCTCCAGCTCTTGTGAGAAGACTCGCGG 716
Query 811 ATTTGTAT-CAAATGATTTTATGTCTAGTATCAAGCAGTACTTCCAGTACGGAGTCCCAT 869
|||||||| | | ||| | ||||| | ||||||||| |||||| |||||||||||||
Sbjct 717 ATTTGTATCCGGA-GATATCGTGTCTTCTGTCAAGCAGTTCTTCCATTACGGAGTCCCAT 775
Query 870 CCGCTGGATTGATTTGCTTAGAATGGTGGCTGTTTGAGCTACTCATACTCTGCTCAGGTC 929
| || | | || ||||| ||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 776 CAGCCGCAATGCTTTGCCTAGAATGGTGGCTATTTGAGCTACTTATACTCTGTTCAGGTC 835
Query 930 TTCTCCCAAACCCAAAACTCGAGACATCTGTTCTTTCGATTTGTCTTACAATAGGAACTT 989
||||||| ||||||||||||||||| ||||||||||| ||||||||||||| || |||||
Sbjct 836 TTCTCCCGAACCCAAAACTCGAGACCTCTGTTCTTTCTATTTGTCTTACAACAGCAACTT 895
Query 990 TACACTATGTGATTCCA-TCTGGAGTCGCGGCGGCTGTGAGCACACGAGTGTCAAACAAA 1048
| ||||||||||||||| | ||||||||| |||||||| |||||||| ||||||||||||
Sbjct 896 TGCACTATGTGATTCCAGT-TGGAGTCGCAGCGGCTGTTAGCACACGTGTGTCAAACAAA 954
Query 1049 TTGGGAGCTGGAAATCCTCAAGTTGCTAGGGTTTCCGTATTGGCAGGGCTTTGTCTCTGG 1108
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 955 TTGGGAGCTGGAAATCCTCAAGTTGCTAGGGTTTCAGTATTGGCAGGGCTTTGTCTCTGG 1014
Query 1109 CTTGTAGAGTCAGCTTTCTTTAGCACACTTCTCTTCACCTGCCGAAACATCATAGGCTAC 1168
|| ||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 1015 CTGGTAGAGTCAGCTTTCTTTAGCACACTTCTCTTCACATGCAGGAACATCATAGGCTAC 1074
Query 1169 ACATTCAGCAACAGCAAAGAAGTTGTTGACTATGTTGCTGACATATCTCCTTTGCTCTGT 1228
||||||||||||||||||||||||| |||||||| |||||| || ||||||||||||||
Sbjct 1075 GCATTCAGCAACAGCAAAGAAGTTGTGGACTATGTGGCTGACCTAACTCCTTTGCTCTGT 1134
Query 1229 CTCTCCTTCATCCTCGACGGATTAACGGCAGTTCTAAATGGAGTGGCTAGGGG-ATGTGG 1287
|||||||| | ||||||||||| || |||||||| ||||| || |||||||| | ||||
Sbjct 1135 CTCTCCTTTGTTCTCGACGGATTTACCGCAGTTCTTAATGGGGTTGCTAGGGGCA-GTGG 1193
Query 1288 GTGGCAACACATTGGAGCTTTGATCAACGTGGTGGCTTATTATCTTGTAGGAGCTCCTGT 1347
||||| |||||||||||||||| ||| ||| | ||||||||| | ||||| || || ||
Sbjct 1194 TTGGCAGCACATTGGAGCTTTGAACAATGTGTTAGCTTATTATATCGTAGGTGCCCCGGT 1253
Query 1348 TGGAGTTTACTTAGCTTTCAGTCGTGAGTGGAATGGAAAAGGACTCTGGTGCGGTGTTAT 1407
||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||| |
Sbjct 1254 TGGAGTTTACTTAGCTTTCAGTCGTGAGTTGAACGGAAAAGGACTTTGGTGTGGTGTTGT 1313
Query 1408 GGTTGGATCCGCGGTGCAAGCCACTT-TACTGGCTATCGTCACA-GCCTCCATGAACTGG 1465
|||||||||||| |||||||||| || ||||| || |||||||| | ||||| || |||
Sbjct 1314 GGTTGGATCCGCTGTGCAAGCCA-TTATACTGTCTTTCGTCACATGT-TCCATAAATTGG 1371
Query 1466 AAGGAACAGGCTGAGAAAGCAAGGAAGAGAATAATCTCTACTGAAAATGGATTGGTTTAA 1525
||||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||
Sbjct 1372 AAGGAACAGGCTGAGAAGGCTAGGAAGAGAATAATCTCAACTGAAAATGGATTGGCTTAA 1431
> Ahg930722 jgi|Araly1|930722|scaffold_303179.1
Length=1471
Score = 1718 bits (930), Expect = 0.0
Identities = 1295/1472 (88%), Gaps = 22/1472 (1%)
Strand=Plus/Plus
Query 85 GAAGACGACAATGGAAGAGCCATTTCTTCCG-AGAGACGAGC-AGTTAGT-CTCTTGTAA 141
|||||| |||||||||||||||||||||| | | ||| |||| | || | | | |||||
Sbjct 11 GAAGACAACAATGGAAGAGCCATTTCTTCTGCA-AGATGAGCAACTT--TCCCCCTGTAA 67
Query 142 ATCCACATGGCAAAGTGGTCAGGTCACCGTCGAGCTGAAGAAAGTGAGCCGCTTGGCCGC 201
| |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 68 AGCCACATGGAAAAGTGGTCAGGTTACCGTCGAGCTGAAGAAAGTGAGCAGCTTGGCCGC 127
Query 202 TCCTATGGCCACCGTAACCATAGCTCAGTACTTATTGCCTGTCATCTCAGTCATGGTCGC 261
|||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 128 TCCTATGGCCGCCGTGACCATTGCTCAGTACTTATTGCCTGTCATTTCAGTCATGGTCGC 187
Query 262 CGGCCAC-ATCGGCGAGTTGGAGCTCGCCGGTGTCGCGCTTGCCACGTCTTTCACAAACG 320
|||||| || || ||| | ||||| |||| ||||| ||||| || || ||||||||||
Sbjct 188 TGGCCACAAT-GGTGAGCTCCAGCTCTCCGGCGTCGCTCTTGCAACCTCCTTCACAAACG 246
Query 321 TTTCCGGCTTCAGCATAATGTTTGGGTTAGTTGGTGCATTGGAAACTCTTTGTGGCCAAG 380
||||||| ||||| || |||||||||||| ||||| | |||||||||||||||||||
Sbjct 247 TTTCCGGGTTCAGTATTTTGTTTGGGTTAGCGGGTGCCCTAGAAACTCTTTGTGGCCAAG 306
Query 381 CCTATGGAG-CAGAACAATACGAAAAAATCGGAACCTATACATACTCTGCAATGGCT-TC 438
| ||||||| || ||||||||||||||||||||||||| ||||||||||||| || | ||
Sbjct 307 CTTATGGAGCCA-AACAATACGAAAAAATCGGAACCTACACATACTCTGCAACGG-TCTC 364
Query 439 CAACATACCAATTTGTTTCATCATATCAATTCTATGGATTTACATCGAAAAGCTCTTGAT 498
||||| || |||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 365 TAACATCCCTATTTGTGTCCTCATATCAATTCTATGGATTTACATCGAAAAGCTCTTAAT 424
Query 499 CACTCTCGGGCAAGAGCCTGACATCTCTAGAGTCGCTGGCTCCTACTCATTGTGGCTCGT 558
| ||||||| ||||| ||||||||||| ||||| |||||||||||| | || |||||| |
Sbjct 425 CTCTCTCGGTCAAGACCCTGACATCTCCAGAGTTGCTGGCTCCTACGCCTTTTGGCTCAT 484
Query 559 ACCGGCTTTGTTTGCCCATGC-TATTTTCTTACCACTGACTCGGTTTCTGCTAGCACAAG 617
|||||||||||| || ||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 485 ACCGGCTTTGTTCGCACATGCGT-TTTTCATACCACTGACTCGGTTTCTGCTAGCACAAG 543
Query 618 GGTTGGTTATTTCCCTGCTATACTCTGCCATGACCACCCTTTTGTTCCATATTGCGGTTT 677
|||||||| || ||||||| |||||| || ||||||| ||||||||||| || | ||||
Sbjct 544 GGTTGGTTCTTCCCCTGCTCTACTCTACCCTGACCACTCTTTTGTTCCACATCCCTGTTT 603
Query 678 GCTGGACTTTGGTTTTCGCGCTTGGTCTTGGAAGCAATGGAGCTGCTATTGCTATTAGTT 737
|||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 604 GCTGGACTTTTGTTTTCGCGCTTGGTCTGGGAAGCAATGGAGCTGCCATGGCTATTAGTG 663
Query 738 TGTCTTTCTGGTTTTACGCTGTGATACTCTCATGTCATGTGAGATTTTTCAGCTCTTGCG 797
|||||||||||||||| | |||||| ||||||||| ||||||| || | |||||| ||||
Sbjct 664 TGTCTTTCTGGTTTTATGTTGTGATTCTCTCATGTTATGTGAGGTTCTCCAGCTCCTGCG 723
Query 798 AGAAGACTCGCGGATTTGTATCAAATGATTTTATGTCTAGTATCAAGCAGTACTTCCAGT 857
| |||||||||| ||||||||| | |||||| ||||| |||||| ||||| |||||| |
Sbjct 724 ACAAGACTCGCGTATTTGTATCCAGTGATTTCGTGTCTTGTATCAGGCAGTTCTTCCATT 783
Query 858 ACGGAGTCCCATCCGCTGG-ATTGATTTGCTTAGAATGGTGGCTGTTTGAGCTACTCATA 916
||||||||||||||| || | || ||||| ||||||||||||||||||||||||| |||
Sbjct 784 TCGGAGTCCCATCCGC-GGCAATGCTTTGCCTAGAATGGTGGCTGTTTGAGCTACTTATA 842
Query 917 CTCTGCTCAGGTCTTCTCCCAAACCCAAAACTCGAGACATCTGTTCTTTCGATTTGTCTT 976
||||||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||
Sbjct 843 CTCTGCTCAGGTCTTCTCCTAAACCCAAAACTCGAAACCTCTGTTCTTTCAATTTGTCTT 902
Query 977 ACAATAGGAACTTTACACTATGTGATTCCATCTGGAGTCGCGGCGGCTGTGAGCACACGA 1036
|||| || || ||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 903 ACAACAGCAAGTTTGCACTATGTGATCCCAGCTGGAGTCGCGGCGGCTGTGAGCACACGT 962
Query 1037 GTGTCAAACAAATTGGGAGCTGGAAATCCTCAAGTTGCTAGGGTTTCCGTATTGGCAGGG 1096
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 963 GTGTCAAACAAATTGGGAGCTGGAAATCCTCAAGTTGCTAGGGTTTCAGTATTGGCAGGG 1022
Query 1097 CTTTGTCTCTGGCTTGTAGAGTCAGCTTTCTTTAGCACACTTCTCTTCACCTGCCGAAAC 1156
|||||||||||||| ||||| |||| ||||| || ||||||||||||||||||||| |||
Sbjct 1023 CTTTGTCTCTGGCTGGTAGAATCAGTTTTCTCTACCACACTTCTCTTCACCTGCCGGAAC 1082
Query 1157 ATCATAGGCTACACATTCAGCAACAGCAAAGAAGTTGTTGACTATGTTGCTGACATATCT 1216
|||||||||||| |||| |||||||||||||||||||| |||||||| |||||| || ||
Sbjct 1083 ATCATAGGCTACGCATTTAGCAACAGCAAAGAAGTTGTGGACTATGTGGCTGACCTAACT 1142
Query 1217 CCTTTGCTCTGTCTCTCCTTCATCCTCGACGGATTAACGGCAGTTCTAAATGGAGTGGCT 1276
|||||||||||||||||||| | ||||||||||| || |||||||| ||||| || |||
Sbjct 1143 CCTTTGCTCTGTCTCTCCTTTGTTCTCGACGGATTTACCGCAGTTCTTAATGGTGTTGCT 1202
Query 1277 AGGGGATGTGGGTGGCAACACATTGGAGCTTTGATCAACGTGGTGGCTTATTATCTTGTA 1336
|||||| |||| |||||||||||||||||||||| ||| ||||| ||||||||||| |||
Sbjct 1203 AGGGGAAGTGGTTGGCAACACATTGGAGCTTTGAACAATGTGGTAGCTTATTATCTCGTA 1262
Query 1337 GGAGCTCCTGTTGGAGTTTACTTAGCTTTCAGTCGTGAGTGGAATGGAAAAGGACTCTGG 1396
|||||||| |||||||||||||||||||| | |||||||| || |||||||||||||||
Sbjct 1263 GGAGCTCCGGTTGGAGTTTACTTAGCTTTTAATCGTGAGTTTAACGGAAAAGGACTCTGG 1322
Query 1397 TGCGGTGTTATGGTTGGATCCGCGGTGCAAGCCACTT-TACTGGCTATCGTCACA-GCCT 1454
||||||||| |||| |||||||| |||||||||| || ||||| || | |||||| | |
Sbjct 1323 TGCGGTGTTGTGGTCGGATCCGCTGTGCAAGCCA-TTATACTGTCTTTTGTCACATGT-T 1380
Query 1455 CCATGAACTGGAAGGAACAGGCTGAGAAAGCAAGGAAGAGAATAATCTCTACTGAAAATG 1514
|||| || |||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1381 CCATAAATTGGAAGGAACAGGCTGAGAAGGCTAGGAAGAGAATAATCTCGACTGAAAATA 1440
Query 1515 GATTGGTTT-AAATAAAGGTTGTTCCTAAGAG 1545
|||||| || ||| || ||| ||| || ||||
Sbjct 1441 GATTGGCTTGAAAGAAGGGT-GTTTCTGAGAG 1471
> Ahg480060 jgi|Araly1|480060|fgenesh2_kg.3__2761__AT2G04040.1
Length=1483
Score = 1570 bits (850), Expect = 0.0
Identities = 1277/1484 (86%), Gaps = 26/1484 (2%)
Strand=Plus/Plus
Query 92 ACAATGGAAGAGCCATTTCTTCCGAGAGACGAGCAGT-TAGTCTCTTGT-AAATCCACAT 149
|||||||||||||||||||||||||||||||||| | ||||| | | | | | |||||
Sbjct 2 ACAATGGAAGAGCCATTTCTTCCGAGAGACGAGC-TTCTAGTCCCCTCTCCAGT-CACAT 59
Query 150 GGCAAAGTGGTCAGGTCACCGTCGAGCTGAAGAAAGTGAGCCGCTTGGCCGCTCCTATGG 209
|||||| ||| | ||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 60 GGCAAACAAATCAATTAACCGTCGAGCTAAAGAAACTGAGCCGCTTGGCCGCTCCTATGG 119
Query 210 CCACCGTAACCATAGCTCAGTACTTATTGCCTGTCATCTCAGTCATGGTCGCCGGCCACA 269
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 CCACCGTGACCATTGCTCAGTACTTATTGCCTGTCATCTCAGTCATGGTCGCTGGCCACA 179
Query 270 TCGGCGAGTTGGAGCTCGCCGGTGTCGCGCTTGCCACGTCTTTCACAAACGTTTCCGGCT 329
||||||| | ||||| ||||||| || ||||| || || ||||||||||| |||| |
Sbjct 180 ACGGCGAGCTCCAGCTCTCCGGTGTGGCTCTTGCAACCTCCTTCACAAACGTCACCGGTT 239
Query 330 TCAGCATAATGTTTGGGTTAGTTGGTGCA-TTGGAAACTCTTTGTGGCCAAGCCTATGGA 388
||||||| |||| ||| ||||| |||||| ||| ||||||||||||||||||| ||||||
Sbjct 240 TCAGCATTATGTGTGGATTAGTGGGTGCACTTG-AAACTCTTTGTGGCCAAGCTTATGGA 298
Query 389 GC-AGAACAATACGAAAAAATCGGAACCTATACATACTCTGCAATGGCTTCCAACATACC 447
|| | |||||||||| ||||||||||| || ||||||||||||| |||||||||||| |
Sbjct 299 GCCA-AACAATACGACAAAATCGGAACTTACGCATACTCTGCAATTGCTTCCAACATAAC 357
Query 448 AATTTGTTTCATCATATCAATTCTATGGATTTACATCGAAAAGCTCTTGATCACTCTCGG 507
|||||||||| ||||||||||||| ||| ||||||| |||||| ||||||| |||| ||
Sbjct 358 AATTTGTTTCCTCATATCAATTCTCTGGCTTTACATTGAAAAGATCTTGATTGCTCTAGG 417
Query 508 GCAAGAGCCTGACATCTCTAGAGTCGCTGGCTCCTACTCATTGTGGCTCGTACCGGCTTT 567
||||| ||||| || || ||| |||||||||||||| | || |||||| ||||| ||||
Sbjct 418 ACAAGACCCTGAAATTTCAAGAATCGCTGGCTCCTACGCCTTTTGGCTCATACCGACTTT 477
Query 568 GTTTGCCCATGCTATTTTCTTACCACTGACTCGGTTTCTGCT-AGCACAAGGGTTGGTTA 626
|| | ||| || ||| || |||||||| | ||||||||||| | ||||||||||||||
Sbjct 478 ATTCGGCCAAGCGATTGTCATACCACTGTCCCGGTTTCTGCTGA-CACAAGGGTTGGTTC 536
Query 627 TTTCC-CTGCTATACTCTGCCATGACCACCCTTTTGTTCCATATTGCGGTTTGCTGGACT 685
|| || ||||| | | ||||| |||| |||||||||||||| || ||||| ||||||
Sbjct 537 TT-CCTCTGCTCTTCACTGCCGTGACTACCCTTTTGTTCCACGTTTTTGTTTGTTGGACT 595
Query 686 TTGGTTTTCGCGCTTGGTCTTGGAAGCAATGGAGCTGCTATTGCTATTAGTTTGTCTTTC 745
||||||||| | ||||||| ||||| |||||| |||| || |||| |||| ||||||||
Sbjct 596 TTGGTTTTCTTGTTTGGTCTGGGAAGTAATGGACCTGCCATGGCTACTAGTGTGTCTTTC 655
Query 746 TGGTTTTACGCTGTGATACTCTCATGTCATGTGAGATTTTTCAGCTCTTGCGAGAAGACT 805
||||||||||||||||||||||||||| |||||| ||| | |||||||||||||||||||
Sbjct 656 TGGTTTTACGCTGTGATACTCTCATGTTATGTGAAATTCTCCAGCTCTTGCGAGAAGACT 715
Query 806 CGCGGATTTGTATC--AAATGATTTTATGTCTAGTATCAAGCAGTACTTCCAGTACGGAG 863
|||||||||||||| ||| ||||| ||||| ||||||||||| |||||| ||||||
Sbjct 716 CGCGGATTTGTATCCGAAA--ATTTTGTGTCTTCTATCAAGCAGTTCTTCCAATACGGAA 773
Query 864 TCCCATCCGCTGGATTGATTTGCTTAGAATGGTGGCTGTTTGAGCTACTCATACTCTGCT 923
||||||| |||| | |||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct 774 TCCCATCAGCTGCAATGATTTGCCTAGAATGGTGGCTATTTGAGATACTCATACTCTGCT 833
Query 924 CAGGTCTTCTCCCAAACCCAAAACTCGAGACATCTGTTCTTTCGATTTGTCTTACAATAG 983
||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 834 CAGGTCTTCTCCCTAACCCGAAACTCGAGACCTCTGTTCTTTCCATATGTCTTACAATAG 893
Query 984 GAACTTTACACTATGTGATTCCATCTGGAGTCGCGGCGGCTGTGAGCACACGAGTGTCAA 1043
|||||| |||||||||||| || |||||||||| ||||||||||||||||| || ||||
Sbjct 894 AAACTTTGCACTATGTGATTGCAGCTGGAGTCGCTGCGGCTGTGAGCACACGTGTATCAA 953
Query 1044 ACAAATTGGGAGCTGGAAATCCTCAAGTTGCTAGGGTTTCCGTATTGGCAGGGCTTTGTC 1103
|||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 954 ACAATTTGGGAGCTGGGAATCCTCAAGTTGCTAGGGTTTCAGTATTAGCAGGGCTCTGTC 1013
Query 1104 TCTGGCTTGTAGAGTCAGCTTTCTTTAGCACACTTCTCTTCACCTGCCGAAACATCATAG 1163
||||| | ||||| |||||||||||||||| |||||||||| ||| | | ||||||||||
Sbjct 1014 TCTGGATAGTAGAATCAGCTTTCTTTAGCATACTTCTCTTCGCCTTCAGGAACATCATAG 1073
Query 1164 GCTACACATTCAGCAACAGCAAAGAAGTTGTTG-ACTATGTTGCTGACAT-ATCTCCTTT 1221
||||| ||||||||||||||||||||||| ||| ||||||| |||||| | | |||||||
Sbjct 1074 GCTACGCATTCAGCAACAGCAAAGAAGTT-TTGGACTATGTCGCTGACCTGA-CTCCTTT 1131
Query 1222 GCTCTGTCTCTCCTTCATCCTCGACGGATTAACGGCAGTTCTAAATGGAGTGGCTAGGGG 1281
|||||||||||| |||||||||||||| || || |||||||| ||||| || ||||| ||
Sbjct 1132 GCTCTGTCTCTCTTTCATCCTCGACGGCTTCACAGCAGTTCTTAATGGGGTTGCTAGAGG 1191
Query 1282 ATGTGGGTGGCAACACATTGGAGCTTTGATCAA--CGTGGTGGCTTATTATCTTGTAGGA 1339
| |||||||||||||||||||||||| || ||| | || | |||||||||| ||||||
Sbjct 1192 AAGTGGGTGGCAACACATTGGAGCTTGGAACAATAC-TGTTT-CTTATTATCTCGTAGGA 1249
Query 1340 GCTCCTGTTGGAGTTTACTTAGCTTTCAGTCGTGAGTGGAATGGAAAAGGACTCTGGTGC 1399
|||||||||||| |||||||||||||||||| || || ||| ||||||||||| ||||||
Sbjct 1250 GCTCCTGTTGGAATTTACTTAGCTTTCAGTCTTGGGTTGAACGGAAAAGGACTTTGGTGC 1309
Query 1400 GGTGTTATGGTTGGATCCGCGGTGCAAGCCACTTTACTGGCTATCGTCACAGCCTCCATG 1459
|||||| |||||||||| | || ||||| ||| |||||||||| |||||| | |||||
Sbjct 1310 GGTGTTGTGGTTGGATCTACTGTACAAGCTACTATACTGGCTATTGTCACAACTTCCATA 1369
Query 1460 AACTGGAAGGAACAGGCTGAGAAAGCAAGGAAGAGAATA-ATCTCTACTGAAAATGGATT 1518
|| |||||||||||||||||||| || |||||||||||| | ||| ||||||||| ||||
Sbjct 1370 AATTGGAAGGAACAGGCTGAGAAGGCTAGGAAGAGAATAGA-CTCAACTGAAAATAGATT 1428
Query 1519 GGTTTAAATAAAGGTTGTTCCTAAGAGCTATCTCAAAGTATTTG 1562
|| ||||| ||| | |||| || | || ||||||||| ||||||
Sbjct 1429 GGCTTAAACAAATGATGTTTCTCATAGTTATCTCAAACTATTTG 1472
> Ahg342751 jgi|Araly1|342751|fgenesh1_pg.C_scaffold_3002514
Length=438
Score = 625 bits (338), Expect = 4e-178
Identities = 405/438 (92%), Gaps = 2/438 (0%)
Strand=Plus/Plus
Query 1089 TGGCAGGGCTTTGTCTCTGGCTTGTAGAGTCAGCTTTCTTTAGCACACTTCTCTTCACCT 1148
|||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 2 TGGCAGGGCTTTGTCTCTGGATAGTAGAATCAGCTTTCTTTAGCACACTTCTCTTCACCT 61
Query 1149 GCCGAAACATCATAGGCTACACATTCAGCAACAGCAAAGAAGTTGTTGACTATGTTGCTG 1208
| || || ||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 62 GTCGGAATATCGTAGGCTACACATTCAGCAACAGCAAAGAAGTTGTTGACTATGTGGCTG 121
Query 1209 ACATATC-TCCTTTGCTCTGTCTCTCCTTCATCCTCGACGGATTAACGGCAGTTCTAAAT 1267
||||||| | ||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 122 ACATATCATA-TTTGCTCTGTCTCTCATTCATCCTCGACGGATTTACCGCAGTTCTAAAT 180
Query 1268 GGAGTGGCTAGGGGATGTGGGTGGCAACACATTGGAGCTTTGATCAACGTGGTGGCTTAT 1327
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAGTTGCTAGAGGATGTGGGTGGCAACACATTGGAGCTTTGATCAACGTGGTGGCTTAT 240
Query 1328 TATCTTGTAGGAGCTCCTGTTGGAGTTTACTTAGCTTTCAGTCGTGAGTGGAATGGAAAA 1387
||||| ||||| || || ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 241 TATCTCGTAGGTGCCCCGGTTGGAGTTTACTTAGCTTTCAGTCTTGAGTGGAACGGAAAA 300
Query 1388 GGACTCTGGTGCGGTGTTATGGTTGGATCCGCGGTGCAAGCCACTTTACTGGCTATCGTC 1447
||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 301 GGACTGTGGTGCGGTGTTATGGTTGGATCCGCTGTACAAGCCACTATACTGGCTATCGTC 360
Query 1448 ACAGCCTCCATGAACTGGAAGGAACAGGCTGAGAAAGCAAGGAAGAGAATAATCTCTACT 1507
||||| ||||| || ||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 361 ACAGCGTCCATAAATTGGAAGGAACAGGCTGAGAAAGCTAGGAAGAGAATAGTCTCAACT 420
Query 1508 GAAAATGGATTGGTTTAA 1525
||||||||||||| ||||
Sbjct 421 GAAAATGGATTGGCTTAA 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62353731065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5