BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04090.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342752 jgi|Araly1|342752|fgenesh1_pg.C_scaffold_3002515 2185 0.0
Ahg480065 jgi|Araly1|480065|fgenesh2_kg.3__2766__AT2G04100.1 1993 0.0
Ahg480060 jgi|Araly1|480060|fgenesh2_kg.3__2761__AT2G04040.1 651 0.0
> Ahg342752 jgi|Araly1|342752|fgenesh1_pg.C_scaffold_3002515
Length=1428
Score = 2185 bits (1183), Expect = 0.0
Identities = 1352/1433 (94%), Gaps = 14/1433 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGATCCACTTTTATTGGGAGATGATCAGTTAATCACTAGAAACCTCAAGTCAACG 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAAGATCCACTTTTATTGGGAGATGATCAGTTAATCACTAGAAACCTAAAGTCAACG 60
Query 61 CCGACATGGTGGATGAATTTTACGGCGGAGCTGAAGAACGTCAG-CTCTATGGCGGCGCC 119
||||||||| ||||| |||||||||||||||||||||||||||| | | ||||| ||| |
Sbjct 61 CCGACATGGAGGATGGATTTTACGGCGGAGCTGAAGAACGTCAGCCGC-ATGGCAGCGTC 119
Query 120 TATGGCCACCGTGACAGTGTCTCAATATCTATTGCCCGTGATCTCGGTCATGGTCGCCGG 179
||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 TATGGCCACAGTGACCGTGGCTCAATATCTATTGCCCGTTATCTCGGTCATGGTCGCCGG 179
Query 180 CCACTGCGGTGAACTCCAGCTGTCTGGTGTCACTCTTGCCACTGCTTTCGCAAACGTCTC 239
|||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 180 CCACCGCGGTGAACTCCAGCTGTCTGGTGTCGCTCTTGCCACTGCTTTCGCTAACGTCTC 239
Query 240 CGGCTTCGGCATCATGTATGGTTTAGTGGGTGCACTTGAAACTCTATGTGGCCAAGCTTA 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGGCTTCGGCATCATGTATGGTTTAGTGGGTGCACTTGAAACTCTATGTGGCCAAGCTTA 299
Query 300 TGGAGCAAAACAATAC-ACTAAAATCGGAACTTACACTTTCTCTGCAATAGTCTCAAACG 358
|||||||||||||||| | |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 300 TGGAGCAAAACAATACGA-TAAAATAGGAACTTACACTTACTCTGCAATAGTCTCAAACG 358
Query 359 TACCTA-TAGTTGTTCTCATATCGATTCTCTGGTTTTACATGGACAAACTCTTTG-TTTC 416
|||| | | | | |||||||||| || |||||||||||||||||||||||| ||| ||||
Sbjct 359 TACCCATTTG-TCTTCTCATATCTATCCTCTGGTTTTACATGGACAAACTC-TTGATTTC 416
Query 417 ACTTGGACAAGATCCTGACATCTCCAAGGTAGCTGGTTCTTACGCGGTTTGTCTTATACC 476
| | |||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 417 AATCGGACAAGACCCTGACATCTCCAAGGTAGCTGGTTCCTATGCGGTTTGTCTTATACC 476
Query 477 GGCATTGTTAGCTCAAGCAGTGCAACAACCTTTGACTCGGTTTCTCCAGACTCAGGGTTT 536
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGCATTGTTAGCTCAAGCGGTGCAACAACCTTTGACTCGGTTTCTCCAGACTCAGGGTTT 536
Query 537 GGTTCTTCCTCTTCTCTACTGTGCCATAACCACCCTTTTATTCCATATACCAGTTTGTTT 596
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 537 GGTTCTTCCTCTTCTCTACTGTGCCATAACTACCCTTTTGTTCCATATACCCGTTTGTTT 596
Query 597 GATTCTGGTTTACGCGTTTGGTCTTGGAAGCAATGGAGCCGCCTTGGCTATTGGTTTGTC 656
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 597 GACTCTGGTTTACGCGTTTGGTCTTGGAAGCAATGGAGCCGCCTTGGCTATTGGTTTCTC 656
Query 657 TTACTGGTTTAATGTCTTGATTCTTGCTTTATATGTGAGATTTTCAAGCGCTTGCGAGAA 716
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 657 TTACTGGTTTAATGTCTTAATTCTTGCTTTATATGTGAGATTTTCAAGATCTTGCGAGAA 716
Query 717 GACTCGCGGCTTTGTATCCGATGATTTCGTGTTGAGTGTCAAGCAGTTTTTTCAGTATGG 776
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 GACTCGCGGCTTTGTATCCGATGATTTCGTGTTGAGCGTCAAGCAGTTTTTTCAGTATGG 776
Query 777 GATACCATCAGCAGCAATGACAACCATAGAATGGTCGTTGTTTGAGCTCCTTATCTTATC 836
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 777 GATACCATCAGCAGCAATGACTACCATCGAATGGTCGTTGTTTGAGCTCCTTATATTGTC 836
Query 837 TTCAGGACTCCTCCCAAACCCGAAACTCGAGACCTCTGTTCTTTCCATTTGTCTTACAAC 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTCAGGACTCCTCCCAAACCCGAAACTCGAGACCTCTGTTCTTTCCATTTGTCTTACAAC 896
Query 897 ATCATCTCTCCACTGTGTCATTCCAATGGGTATCGGGGCTGCTGGAAGCACACGGATTTC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATCATCTCTCCACTGTGTCATTCCAATGGGTATCGGGGCTGCTGGAAGCACACGGATTTC 956
Query 957 AAACGAATTGGGAGCGGGAAATCCGGAGGTTGCTAGGCTGGCAGTGTTTGCCGGTATTTT 1016
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 957 AAACGAATTGGGAGCGGGGAATCCCGAGGTTGCTAGGCTGGCAGTGTTCGCCGGTATTTT 1016
Query 1017 CCTTTGGTTCCTAGAGGCTACCATTTGTAGCACACTTCTGTTCACTTGCAAAAATATTTT 1076
||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1017 CCTGTGGTTCCTAGAGGCTACCATTTGTAGCACACTTCTCTTCACGTGCAAAAATATCTT 1076
Query 1077 TGGCTACGCGTTCAGCAATAGCAAAGAAGTTGTGGACTATGTCACGGAGCTATCTTCGCT 1136
|| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1077 CGGGTATGCCTTCAGCAATAGCAAAGAAGTTGTGGACTATGTCACGGAGCTATCTTCTCT 1136
Query 1137 GCTTTGTCTTTCATTTATGGTCGATGGATTTTCTTCAGTGCTTGATGGGGTTGCTAGGGG 1196
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GCTTTGTCTCTCATTTATGGTTGATGGATTTTCTTCAGTGCTTGATGGGGTTGCTAGGGG 1196
Query 1197 AAGTGGGTGGCAAAATATTGGAGCTTGGGCAAATGTGGTGGCTTACTATCTCCTAGGAGC 1256
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AAGTGGGTGGCAAAATATTGGCGCTTGGGCAAATGTGGTGGCTTACTATCTCCTAGGAGC 1256
Query 1257 TCCTGTTGGATTTTTCTTAGGATTTTGGGGTCATATGAACGGCAAAGGGCTATGGATTGG 1316
||| |||||| ||||||||||||||||| |||| |||||||| |||||||||||||||||
Sbjct 1257 TCCGGTTGGACTTTTCTTAGGATTTTGGTGTCACATGAACGGTAAAGGGCTATGGATTGG 1316
Query 1317 TGTGATCGTTGGGTCCACTG-CTCAAGGGATCATACTAGCTATAGTCACTGCTTGCCTGA 1375
|||| |||||||||| | || ||||||| ||||||||||||||||| ||||||||| |||
Sbjct 1317 TGTGGTCGTTGGGTCTA-TGGCTCAAGGCATCATACTAGCTATAGTTACTGCTTGCATGA 1375
Query 1376 GTTGGGAGGAGCAGGCTGCCAAGGCCAGAGAA-A-GAATAGTTGGAAGAACAT 1426
||||||||||||||||||||||||| | |||| | | ||||||||||||||||
Sbjct 1376 GTTGGGAGGAGCAGGCTGCCAAGGC-A-AGAATACGGATAGTTGGAAGAACAT 1426
> Ahg480065 jgi|Araly1|480065|fgenesh2_kg.3__2766__AT2G04100.1
Length=1559
Score = 1993 bits (1079), Expect = 0.0
Identities = 1315/1430 (92%), Gaps = 12/1430 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGATCCACTTTTATTGGGAGATGATCAGTTAATCACTAGAAACCTCAAGTCAACG 60
|||||||||||||||||||||| ||| |||||| ||||||| ||| || ||| | |||
Sbjct 80 ATGGAAGATCCACTTTTATTGGAAGACGATCAGATAATCACCGGAAGTCTTAAGCCGACG 139
Query 61 CCGACATGGTGGATGAATTTTACGGCGGAGCTGAAGAACGTCAG-CTCTATGGCGGCGCC 119
||||||||| | |||||||| ||||||||||| ||||||||||| | | |||||| |||
Sbjct 140 CCGACATGGAGAATGAATTTCACGGCGGAGCTAAAGAACGTCAGCCGC-ATGGCGTTGCC 198
Query 120 TATGGCCACCGTGACAG-TGTCTCAATATCTATTGCCCGTGATCTCGGTCATGGTCGCCG 178
||||||||||||||| | || ||||||||||||||||||| ||||| |||||||||||||
Sbjct 199 TATGGCCACCGTGACCGTTG-CTCAATATCTATTGCCCGTTATCTCAGTCATGGTCGCCG 257
Query 179 GCCACTGCGGTGAACTCCAGCTGTCTGGTGTCACTCTTGCCACTGCTTTCGCAAACGTCT 238
||||| || | ||||||||||| || || ||| ||||||||||| |||| ||||||||||
Sbjct 258 GCCACCGCAGCGAACTCCAGCTCTCCGGCGTCGCTCTTGCCACTTCTTTTGCAAACGTCT 317
Query 239 CCGGCTTCGGCATCATGTATGGTTTAGTGGGTGCACTTGAAACTCTATGTGGCCAAGCTT 298
| |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 318 CTGGCTTCAGCCTCATGTTTGGTTTAGTGGGTGCACTTGAAACTCTATGTGGCCAAGCTT 377
Query 299 ATGGAGCAAAACAATACACTAAAATCGGAACTTACACTTTCTCTGCAATAGTCTCAAACG 358
||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 378 ATGGAGCAAAACAATACGCGAAAATCGGAACTTACACTTACTCTGCAATAGTCTCAAACA 437
Query 359 TACCTATAGTTGTTCTCATATCGATTCTCTGGTTTTACATGGACAAACTCTTTG-TTTCA 417
||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 438 TACCTATAGTTGTTCTCATATCGATTCTCTGGTTTTATATGGACAAACTC-TTGATTTCA 496
Query 418 CTTGGACAAGATCCTGACATCTCCAAGGTAGCTGGTTCTTACGCGGTTTGTCTTATACCG 477
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 497 ATCGGACAAGATCCTGACATCTCCAAGGTAGCTGGTTCCTACGCGGTTTGTCTTATACCT 556
Query 478 GCATTGTTAGCTCAAGCAGTGCAACAACCTTTGACTCGGTTTCTCCAGACTCAGGGTTTG 537
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct 557 GCATTGTTAGCTCAAGCGGTGCAACAACCTTTGAATCGGTTTCTCCAGACTCAGGGCTTG 616
Query 538 GTTCTTCCTCTTCTCTACTGTGCCATAACCACCCTTTTATTCCATATA-CCAGTTTGTTT 596
|||||||||||||||||||||||||| ||||| ||||| ||||||||| | ||||||||
Sbjct 617 GTTCTTCCTCTTCTCTACTGTGCCATCACCACACTTTTGTTCCATATATTC-GTTTGTTT 675
Query 597 GATTCTGGTTTACGCGTTTGGTCTTGGAAGCAATGGAGCCGCCTTGGCTATTGGTTTGTC 656
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 676 GGTTCTGGTTTACGCGTTTGGTCTTGGAAGCAATGGAGCCGCATTGGCTATTGGTTTGTC 735
Query 657 TTACTGGTTTAATGTCTTGATTCTTGCTTTATATGTGAGATTTTCAAGCGCTTGCGAGAA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 736 TTACTGGTTTAATGTCTTGATTCTTGCTTTATATGTGAGATTTTCAAGCGCTTGCGAAAA 795
Query 717 GACTCGCGGCTTTGTATCCGATGATTTCGTGTTGAGTGTCAAGCAGTTTTTTCAGTATGG 776
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GACTCGGGGCTTTGTATCCGATGATTTCGTGTTGAGTGTCAAGCAGTTTTTTCAGTATGG 855
Query 777 GATACCATCAGCAGCAATGACAACCATAGAATGGTCGTTGTTTGAGCTCCTTATCTTATC 836
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 856 GATACCATCAGCAGCAATGACTACCATTGAATGGTCGTTGTTTGAGCTCCTTATATTATC 915
Query 837 TTCAGGACTCCTCCCAAACCCGAAACTCGAGACCTCTGTTCTTTCCATTTGTCTTACAAC 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 CTCAGGACTCCTCCCAAACCCGAAACTCGAGACCTCTGTTCTTTCCATTTGTCTTACAAC 975
Query 897 ATCATCTCTCCACTGTGTCATTCCAATGGGTATCGGGGCTGCTGGAAGCACACGGATTTC 956
|||||||||||||| |||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 976 ATCATCTCTCCACTATGTCATTCCAATGGGTATCGGGGCGGCTGGAAGCGTACGGGTTTC 1035
Query 957 AAACGAATTGGGAGCGGGAAATCCGGAGGTTGCTAGGCTGGCAGTGTTTGCCGGTATTTT 1016
|||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||
Sbjct 1036 AAACGAATTGGGAGCGGGGAATCCGGAGGTTGCTAGGCTGGCAGTGCTTACCGGTATTTT 1095
Query 1017 CCTTTGGTTCCTAGAGGCTACCATTTGTAGCACACTTCTGTTCACTTGCAAAAATATTTT 1076
||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||
Sbjct 1096 CCTTTGGTTCCTAGAGGCTACCATTTGTAGCACACTTCTCTTCATTTGCAGAAATATCTT 1155
Query 1077 TGGCTACGCGTTCAGCAATAGCAAAGAAGTTGTGGACTATGTCACGGAGCTATCTTCGCT 1136
|| || || |||||||| |||||||||||||||||||||||||| ||||||||| | |
Sbjct 1156 CGGGTATGCCTTCAGCAACAGCAAAGAAGTTGTGGACTATGTCACAGAGCTATCTCCTTT 1215
Query 1137 GCTTTGTCTTTCATTTATGGTCGATGGATTTTCTTCAGTGCTTGATGGGGTTGCTAGGGG 1196
||||||| | ||||||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 1216 GCTTTGTATCTCATTTATGGTTGATGGATTTTCGGCAGTGCTTGGTGGGGTTGCTAGGGG 1275
Query 1197 AAGTGGGTGGCAAAATATTGGAGCTTGGGCAAATGTGGTGGCTTACTATCTCCTAGGAGC 1256
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 AAGTGGATGGCAACATATTGGAGCTTGGGCAAATGTGGTGGCTTACTATCTCCTAGGAGC 1335
Query 1257 TCCTGTTGGATTTTTCTTAGGATTTTGGGGTCATATGAACGGCAAAGGGCTATGGATTGG 1316
||| |||||| ||||||||||||||||| |||| |||||||| |||||||||||||| ||
Sbjct 1336 TCCGGTTGGACTTTTCTTAGGATTTTGGTGTCACATGAACGGTAAAGGGCTATGGATCGG 1395
Query 1317 TGT-GATCGTTGGGTCCACTGCTCAAGGGATCATACTAGCTATAGTCACTGCTTGCCTGA 1375
||| | | |||||||| || || ||||| ||||||||||||||||||||||||||| |||
Sbjct 1396 TGTAG-TGGTTGGGTCTACGGCGCAAGGAATCATACTAGCTATAGTCACTGCTTGCATGA 1454
Query 1376 GTTGGGAGGAGCAGGCTGCCAAGGCCAGAGAA-AGAATAGTTGGAAGAAC 1424
||||| | ||||||||||||||||| ||| || |||||||||| | ||||
Sbjct 1455 GTTGGAATGAGCAGGCTGCCAAGGCAAGA-AAGAGAATAGTTGTACGAAC 1503
> Ahg480060 jgi|Araly1|480060|fgenesh2_kg.3__2761__AT2G04040.1
Length=1483
Score = 651 bits (352), Expect = 0.0
Identities = 1051/1376 (76%), Gaps = 98/1376 (7%)
Strand=Plus/Plus
Query 88 GAGCTGAAG-AACGTCAG-CTCTATGGCGGCGCCTATGGCCACCGTGA-CAGTGTCTCAA 144
||||| ||| ||| | || | || |||| || |||||||||||||||| || || ||||
Sbjct 83 GAGCTAAAGAAAC-TGAGCCGCT-TGGCCGCTCCTATGGCCACCGTGACCATTG-CTCAG 139
Query 145 TATC-TATTGCCCGTGATCTCGGTCATGGTCGCCGGCCACTGCGGTGAACTCCAGCTGTC 203
|| | ||||||| || ||||| ||||||||||| |||||| ||| || |||||||| ||
Sbjct 140 TA-CTTATTGCCTGTCATCTCAGTCATGGTCGCTGGCCACAACGGCGAGCTCCAGCTCTC 198
Query 204 TGGTGTCACTCTTGCCA-CTGCTTTCGCAAACGTCTCCGGCTTCGGCATCATGTATGGTT 262
||||| ||||||| | || | ||| |||||||| |||| ||| |||| |||| ||| |
Sbjct 199 CGGTGTGGCTCTTGCAACCT-CCTTCACAAACGTCACCGGTTTCAGCATTATGTGTGGAT 257
Query 263 TAGTGGGTGCACTTGAAACTCTATGTGGCCAAGCTTATGGAGCAAAACAATAC-ACTAAA 321
|||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |||
Sbjct 258 TAGTGGGTGCACTTGAAACTCTTTGTGGCCAAGCTTATGGAGCCAAACAATACGAC-AAA 316
Query 322 ATCGGAACTTACACTTTCTCTGCAATAGTC-TCAAACGTACCTATAGTTG-TT-CTCATA 378
|||||||||||| | | ||||||||| | | || ||| || | | | ||| || ||||||
Sbjct 317 ATCGGAACTTACGCATACTCTGCAATTG-CTTCCAACATAAC-A-ATTTGTTTCCTCATA 373
Query 379 TCGATTCTCTGGTTTTACATGGACAAA-CTCTTTG-TTTCACTTGGACAAGATCCTGACA 436
|| ||||||||| ||||||| || ||| || ||| || | || |||||||| ||||| |
Sbjct 374 TCAATTCTCTGGCTTTACATTGA-AAAGATC-TTGATTGCTCTAGGACAAGACCCTGAAA 431
Query 437 TCTCCAAG-GTAGCTGGTTCTTACGCGGTTTGTCTTATACCGGCATTGTT-AGCTCAAGC 494
| | |||| | ||||| || ||||| |||| || |||||| | || || || |||||
Sbjct 432 T-TTCAAGAATCGCTGGCTCCTACGCCTTTTGGCTCATACCGACTTTATTCGGC-CAAGC 489
Query 495 -AGTGCAACA-ACCTTTGACTCGGTTTCTCCAGACTC-AGGGTTTGGTTCTTCCTCTTCT 551
| || || ||| || | |||||||| | ||| | |||| |||||||||||||| ||
Sbjct 490 GATTG--TCATACCACTGTCCCGGTTTCTGCTGACACAAGGG-TTGGTTCTTCCTCTGCT 546
Query 552 CTACTGTGCCATAACCACCCTTTTATTCCATATACCAGTTTGTTTGA-TTCTGGTTTACG 610
|| | |||| | || |||||||| ||||| | ||||||| || || |||||| |
Sbjct 547 CTTCACTGCCGTGACTACCCTTTTGTTCCACGTTTTTGTTTGTTGGACTT-TGGTTTTCT 605
Query 611 CGTTTGGTCTTGGAAGCAATGGAGCC-GCCTTGGCTATTGGTTTGTCTTACTGGTTTAAT 669
||||||||| ||||| |||||| || ||| |||||| | || |||||| ||||||| |
Sbjct 606 TGTTTGGTCTGGGAAGTAATGGA-CCTGCCATGGCTACTAGTGTGTCTTTCTGGTTTTAC 664
Query 670 GTCT-TGATTCT-TGC-TTTATATGTGAGATTTTCAAGCGCTTGCGAGAAGACTCGCGGC 726
| || |||| || | | | | ||||||| ||| || ||| |||||||||||||||||||
Sbjct 665 G-CTGTGATACTCT-CATGT-TATGTGAAATTCTCCAGCTCTTGCGAGAAGACTCGCGGA 721
Query 727 TTTGTATCCGATGATTTCGTGT-TGAGTGTCAAGCAGTTTTTTCAGTATGGGATACCATC 785
||||||||||| |||| |||| | | |||||||||| || || || || || |||||
Sbjct 722 TTTGTATCCGAAAATTTTGTGTCT-TCTATCAAGCAGTTCTTCCAATACGGAATCCCATC 780
Query 786 AGCAGCAATGA-CAACCATAGAATGGTCGTTGTTTGAGCTCCTTAT-CTTAT-CTTCAGG 842
||| ||||||| || ||||||||| | | |||||| | || || | | | | |||||
Sbjct 781 AGCTGCAATGATTTGCC-TAGAATGGTGGCTATTTGAGATACTCATAC-TCTGC-TCAGG 837
Query 843 ACTCCTCCCAAACCCGAAACTCGAGACCTCTGTTCTTTCCATTTGTCTTACAACATCATC 902
|| ||||| |||||||||||||||||||||||||||||||| |||||||||| | | |
Sbjct 838 TCTTCTCCCTAACCCGAAACTCGAGACCTCTGTTCTTTCCATATGTCTTACAATAGAAAC 897
Query 903 TCTCCACTGTGTCATTCCAA-TGG-GTATCGG-GGCTGCTGGAAGCACACG-GATTTCAA 958
| | |||| ||| ||| || ||| || | | ||||| || | ||||||| | | ||||
Sbjct 898 TTTGCACTATGTGATTGCAGCTGGAGTCGCTGCGGCTG-TG-A-GCACACGTG-TATCAA 953
Query 959 ACGAATT-GGGAGC-GGGAAATCCGGAGGTTGCTAGGCTGGCAGTGTTTGCCGGTATTT- 1015
|| |||| |||||| ||||| ||| | ||||||||| | |||| || || || | |
Sbjct 954 AC-AATTTGGGAGCTGGGAA-TCCTCAAGTTGCTAGGGTTTCAGTATTAGCAGGGCTCTG 1011
Query 1016 TCCTTTGGTTCCTAGAGGCTACCATT-TGTAGCACACTTCTGTTCAC-TTGCAAAAATAT 1073
|| | ||| | |||| | | | || | ||||| |||||| ||| | || || || ||
Sbjct 1012 TC-TCTGGATAGTAGAATC-AGCTTTCTTTAGCATACTTCTCTTCGCCTT-CAGGAACAT 1068
Query 1074 TTTTGGCTACGCGTTCAGCAATAGCAAAGAAGTTGTGGACTATGTCACGGAGCT-ATCTT 1132
| |||||||| |||||||| |||||||||||| ||||||||||| | || || | ||
Sbjct 1069 CATAGGCTACGCATTCAGCAACAGCAAAGAAGTTTTGGACTATGTCGCTGACCTGA-CTC 1127
Query 1133 CGCTGCTTTGTCTTTCATTT-ATGGTCGATGGATTTTCTTCAGTGCTTGATGGGGTTGCT 1191
| |||| ||||| || ||| || |||| || || | |||| ||| |||||||||||
Sbjct 1128 CTTTGCTCTGTCTCTC-TTTCATCCTCGACGGCTTCACAGCAGTTCTTAATGGGGTTGCT 1186
Query 1192 AGGGGAAGTGGGTGGCAAAATATTGGAGCTTGGG-CAA-A-TGTGGTGGCTTACTATCTC 1248
|| ||||||||||||||| | |||||||||||| ||| | ||| | |||| ||||||
Sbjct 1187 AGAGGAAGTGGGTGGCAACACATTGGAGCTTGGAACAATACTGTT-T--CTTATTATCTC 1243
Query 1249 CTAGGAGCTCCTGTTGGATTTTTCTTAGGATT---T-TGGGGTCATATGAACGGCAAAGG 1304
||||||||||||||||| ||| ||||| || | | |||| | |||||| |||||
Sbjct 1244 GTAGGAGCTCCTGTTGGAATTTACTTAGCTTTCAGTCTTGGGT--T--GAACGGAAAAGG 1299
Query 1305 GCTATGGATT-GGTGT-GATCGTTGGGTCCACTGCT-CAAGGGA-TCATACTAGCTATAG 1360
|| ||| | ||||| | | ||||| || |||| | |||| | | ||||| ||||| |
Sbjct 1300 ACTTTGG-TGCGGTGTTG-TGGTTGGATCTACTG-TACAAGCTACT-ATACTGGCTATTG 1355
Query 1361 TCACTGCTTGCC-TGAGTTGGGAGGAGCAGGCTGCCAAGGCCAGAGAA-AGAATAG 1414
|||| ||| || | | |||| |||| ||||||| ||||| || ||| |||||||
Sbjct 1356 TCACAACTT-CCATAAATTGGAAGGAACAGGCTGAGAAGGCTAG-GAAGAGAATAG 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5