BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04100.1
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480065 jgi|Araly1|480065|fgenesh2_kg.3__2766__AT2G04100.1 2436 0.0
Ahg342752 jgi|Araly1|342752|fgenesh1_pg.C_scaffold_3002515 1960 0.0
Ahg480060 jgi|Araly1|480060|fgenesh2_kg.3__2761__AT2G04040.1 662 0.0
> Ahg480065 jgi|Araly1|480065|fgenesh2_kg.3__2766__AT2G04100.1
Length=1559
Score = 2436 bits (1319), Expect = 0.0
Identities = 1481/1561 (95%), Gaps = 4/1561 (0%)
Strand=Plus/Plus
Query 1 GAAGTCGTGCATTCTCATCTCACACGTTCCAAGGTCAAGAAAGGATCGTTGACAAGAACT 60
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 GAAGTCGTGCATTCTTATCTCACACGTTCCAAGGTAAAGAAAGGATCGTTGACAAGAACT 60
Query 61 AAAGATCTCCAAGAAGATAATGGAAGATCCACTTTTATTGGGAGACAATCAGATAATCAC 120
|||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 61 AAAGATCTCCGAGAAGATAATGGAAGATCCACTTTTATTGGAAGACGATCAGATAATCAC 120
Query 121 CGGAAGTCTTAAGCCGACGCCGACATGGAGGATGAATTTCACGGCGGAGCTCAAGAACCT 180
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
Sbjct 121 CGGAAGTCTTAAGCCGACGCCGACATGGAGAATGAATTTCACGGCGGAGCTAAAGAACGT 180
Query 181 CAGCCGCATGGCGCTGCCTATGGCCACCGTGACTGTTGCTCAATATCTATTACCCGTTAT 240
||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 181 CAGCCGCATGGCGTTGCCTATGGCCACCGTGACCGTTGCTCAATATCTATTGCCCGTTAT 240
Query 241 CTCAGTCATGGTCGCCGGCCACCGCAGCGAACTCCAGCTCTCAGGCGTTGCTCTTGCCAC 300
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 241 CTCAGTCATGGTCGCCGGCCACCGCAGCGAACTCCAGCTCTCCGGCGTCGCTCTTGCCAC 300
Query 301 TTCTTTTACAAACGTATCCGGCTTCAGTGTCATGTTTGGTTTAGCGGGTGCACTTGAAAC 360
||||||| ||||||| || |||||||| ||||||||||||||| |||||||||||||||
Sbjct 301 TTCTTTTGCAAACGTCTCTGGCTTCAGCCTCATGTTTGGTTTAGTGGGTGCACTTGAAAC 360
Query 361 TCTATGTGGCCAAGCTTATGGAGCAAAACAATACGCGAAAATCGGAACTTACACTTTCTC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 TCTATGTGGCCAAGCTTATGGAGCAAAACAATACGCGAAAATCGGAACTTACACTTACTC 420
Query 421 TGCAATAGTCTCAAACGTACCTATAGTTGTTCTCATATCGATTCTCTGGTTTTACATGGA 480
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 TGCAATAGTCTCAAACATACCTATAGTTGTTCTCATATCGATTCTCTGGTTTTATATGGA 480
Query 481 CAAACTCTTTG-TTTCACTTGGACAAGATCCTGACATCTCCAAGGTAGCTGGTTCTTACG 539
||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 CAAACTC-TTGATTTCAATCGGACAAGATCCTGACATCTCCAAGGTAGCTGGTTCCTACG 539
Query 540 CGGTTTGTCTTATACCGGCATTGTTAGCTCAAGCGGTGCAACAACCTTTGACTCGGTTTC 599
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 CGGTTTGTCTTATACCTGCATTGTTAGCTCAAGCGGTGCAACAACCTTTGAATCGGTTTC 599
Query 600 TCCAGACTCAGGGTTTGGTTCTTCCTCTTCTCTACTGTGCCATAACCACCCTTTTGTTCC 659
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 600 TCCAGACTCAGGGCTTGGTTCTTCCTCTTCTCTACTGTGCCATCACCACACTTTTGTTCC 659
Query 660 ATATA-CCAGTTTGTTTGATTCTGGTTTACGCGTTTGGTCTTGGAAGCAATGGAGCCGCC 718
||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATATATTC-GTTTGTTTGGTTCTGGTTTACGCGTTTGGTCTTGGAAGCAATGGAGCCGCA 718
Query 719 TTGGCTATTGGTTTGTCTTACTGGTTTAACGTCTTGATTCTTGCTTTATATGTGAGATTT 778
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 719 TTGGCTATTGGTTTGTCTTACTGGTTTAATGTCTTGATTCTTGCTTTATATGTGAGATTT 778
Query 779 TCAAGTTCTTGCGAGAAGACTCGCGGCTTTGTGTCTGATGATTTCGTGTTGAGTGTCAAG 838
||||| ||||||| |||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 779 TCAAGCGCTTGCGAAAAGACTCGGGGCTTTGTATCCGATGATTTCGTGTTGAGTGTCAAG 838
Query 839 CAGTTTTTTCAGTATGGAATACCTTCGGCAGCAATGACAACCATAGAGTGGTCATTGTTT 898
||||||||||||||||| ||||| || ||||||||||| ||||| || ||||| ||||||
Sbjct 839 CAGTTTTTTCAGTATGGGATACCATCAGCAGCAATGACTACCATTGAATGGTCGTTGTTT 898
Query 899 GAGTTCCTTATATTATCTTCAGGACTCCTCCCAAACCCGAAACTCGAGACCTCTGTTCTT 958
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAGCTCCTTATATTATCCTCAGGACTCCTCCCAAACCCGAAACTCGAGACCTCTGTTCTT 958
Query 959 TCCATTTGTCTTACAACCTCATCTCTCCACTATGTCATTCCAATGGGTATTGGGGCGGCT 1018
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 TCCATTTGTCTTACAACATCATCTCTCCACTATGTCATTCCAATGGGTATCGGGGCGGCT 1018
Query 1019 GGAAGTATACGGGTTTCAAACGAATTGGGAGCGGGTAATCCCGAGGTTGCGAGGCTGGCA 1078
||||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 1019 GGAAGCGTACGGGTTTCAAACGAATTGGGAGCGGGGAATCCGGAGGTTGCTAGGCTGGCA 1078
Query 1079 GTGTTTGCCGGTATATTCCTTTGGTTCCTAGAGGCTACCATTTGTAGCACACTTCTCTTC 1138
||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GTGCTTACCGGTATTTTCCTTTGGTTCCTAGAGGCTACCATTTGTAGCACACTTCTCTTC 1138
Query 1139 ATTTGTAGAGATATCTTCGGCTACGCCTTTAGCAATAGCAAAGAAGTTGTGGACTATGTC 1198
||||| ||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||
Sbjct 1139 ATTTGCAGAAATATCTTCGGGTATGCCTTCAGCAACAGCAAAGAAGTTGTGGACTATGTC 1198
Query 1199 ACAGAGCTATCTCCTTTGCTTTGTATCTCATTTTTGGTTGATGGATTTTCTGCAGTGCTT 1258
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1199 ACAGAGCTATCTCCTTTGCTTTGTATCTCATTTATGGTTGATGGATTTTCGGCAGTGCTT 1258
Query 1259 GGTGGGGTTGCTAGGGGAAGTGGATGGCAACATATTGGAGCTTGGGCAAATGTGGTGGCT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGTGGGGTTGCTAGGGGAAGTGGATGGCAACATATTGGAGCTTGGGCAAATGTGGTGGCT 1318
Query 1319 TACTATCTCCTAGGAGCTCCGGTTGGACTTTTCTTAGGATTTTGGTGTCACATGAATGGT 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1319 TACTATCTCCTAGGAGCTCCGGTTGGACTTTTCTTAGGATTTTGGTGTCACATGAACGGT 1378
Query 1379 AAAGGGCTATGGATCGGTGTGGTGGTTGGGTCTACGGCGCAAGGAATCATACTAGCTATA 1438
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AAAGGGCTATGGATCGGTGTAGTGGTTGGGTCTACGGCGCAAGGAATCATACTAGCTATA 1438
Query 1439 GTCACTGCTTGCATGAGTTGGAACGAGCAGGCTGCCAAGGCAAGACAGAGAATAGTTGTA 1498
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1439 GTCACTGCTTGCATGAGTTGGAATGAGCAGGCTGCCAAGGCAAGAAAGAGAATAGTTGTA 1498
Query 1499 AGAACTTCTTCATTTGGCAATGGACTTGCTTGAAGGGTTCTTTATTCCCATTTTTGAGAC 1558
||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||
Sbjct 1499 CGAACTTCTTCATTTGGCAATGGACTAGCTTAAAAGGTTCTTTATTTCCATTTTTGAGAC 1558
Query 1559 A 1559
|
Sbjct 1559 A 1559
> Ahg342752 jgi|Araly1|342752|fgenesh1_pg.C_scaffold_3002515
Length=1428
Score = 1960 bits (1061), Expect = 0.0
Identities = 1307/1428 (92%), Gaps = 8/1428 (1%)
Strand=Plus/Plus
Query 80 ATGGAAGATCCACTTTTATTGGGAGACAATCAGATAATCACCGGAAGTCTTAAGCCGACG 139
|||||||||||||||||||||||||| ||||| ||||||| ||| || ||| | |||
Sbjct 1 ATGGAAGATCCACTTTTATTGGGAGATGATCAGTTAATCACTAGAAACCTAAAGTCAACG 60
Query 140 CCGACATGGAGGATGAATTTCACGGCGGAGCTCAAGAACCTCAGCCGCATGGC-GCTGCC 198
||||||||||||||| |||| ||||||||||| |||||| ||||||||||||| || | |
Sbjct 61 CCGACATGGAGGATGGATTTTACGGCGGAGCTGAAGAACGTCAGCCGCATGGCAGC-GTC 119
Query 199 TATGGCCACCGTGACTGTTGCTCAATATCTATTACCCGTTATCTCAGTCATGGTCGCCGG 258
||||||||| ||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 120 TATGGCCACAGTGACCGTGGCTCAATATCTATTGCCCGTTATCTCGGTCATGGTCGCCGG 179
Query 259 CCACCGCAGCGAACTCCAGCTCTCAGGCGTTGCTCTTGCCACTTCTTTTACAAACGTATC 318
||||||| | ||||||||||| || || || |||||||||||| |||| | ||||| ||
Sbjct 180 CCACCGCGGTGAACTCCAGCTGTCTGGTGTCGCTCTTGCCACTGCTTTCGCTAACGTCTC 239
Query 319 CGGCTTCAGTGTCATGTTTGGTTTAGCGGGTGCACTTGAAACTCTATGTGGCCAAGCTTA 378
|||||| | |||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 AGGCTTCGGCATCATGTATGGTTTAGTGGGTGCACTTGAAACTCTATGTGGCCAAGCTTA 299
Query 379 TGGAGCAAAACAATACGCGAAAATCGGAACTTACACTTTCTCTGCAATAGTCTCAAACGT 438
||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 300 TGGAGCAAAACAATACGATAAAATAGGAACTTACACTTACTCTGCAATAGTCTCAAACGT 359
Query 439 ACCTA-TAGTTGTTCTCATATCGATTCTCTGGTTTTACATGGACAAACTCTTTG-TTTCA 496
||| | | | | |||||||||| || |||||||||||||||||||||||| ||| |||||
Sbjct 360 ACCCATTTG-TCTTCTCATATCTATCCTCTGGTTTTACATGGACAAACTC-TTGATTTCA 417
Query 497 CTTGGACAAGATCCTGACATCTCCAAGGTAGCTGGTTCTTACGCGGTTTGTCTTATACCG 556
| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 418 ATCGGACAAGACCCTGACATCTCCAAGGTAGCTGGTTCCTATGCGGTTTGTCTTATACCG 477
Query 557 GCATTGTTAGCTCAAGCGGTGCAACAACCTTTGACTCGGTTTCTCCAGACTCAGGGTTTG 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GCATTGTTAGCTCAAGCGGTGCAACAACCTTTGACTCGGTTTCTCCAGACTCAGGGTTTG 537
Query 617 GTTCTTCCTCTTCTCTACTGTGCCATAACCACCCTTTTGTTCCATATACCAGTTTGTTTG 676
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 538 GTTCTTCCTCTTCTCTACTGTGCCATAACTACCCTTTTGTTCCATATACCCGTTTGTTTG 597
Query 677 ATTCTGGTTTACGCGTTTGGTCTTGGAAGCAATGGAGCCGCCTTGGCTATTGGTTTGTCT 736
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 598 ACTCTGGTTTACGCGTTTGGTCTTGGAAGCAATGGAGCCGCCTTGGCTATTGGTTTCTCT 657
Query 737 TACTGGTTTAACGTCTTGATTCTTGCTTTATATGTGAGATTTTCAAGTTCTTGCGAGAAG 796
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 TACTGGTTTAATGTCTTAATTCTTGCTTTATATGTGAGATTTTCAAGATCTTGCGAGAAG 717
Query 797 ACTCGCGGCTTTGTGTCTGATGATTTCGTGTTGAGTGTCAAGCAGTTTTTTCAGTATGGA 856
|||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 718 ACTCGCGGCTTTGTATCCGATGATTTCGTGTTGAGCGTCAAGCAGTTTTTTCAGTATGGG 777
Query 857 ATACCTTCGGCAGCAATGACAACCATAGAGTGGTCATTGTTTGAGTTCCTTATATTATCT 916
||||| || ||||||||||| ||||| || ||||| ||||||||| |||||||||| ||
Sbjct 778 ATACCATCAGCAGCAATGACTACCATCGAATGGTCGTTGTTTGAGCTCCTTATATTGTCC 837
Query 917 TCAGGACTCCTCCCAAACCCGAAACTCGAGACCTCTGTTCTTTCCATTTGTCTTACAACC 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCAGGACTCCTCCCAAACCCGAAACTCGAGACCTCTGTTCTTTCCATTTGTCTTACAACA 897
Query 977 TCATCTCTCCACTATGTCATTCCAATGGGTATTGGGGCGGCTGGAAGTATACGGGTTTCA 1036
||||||||||||| |||||||||||||||||| ||||| |||||||| | |||| |||||
Sbjct 898 TCATCTCTCCACTGTGTCATTCCAATGGGTATCGGGGCTGCTGGAAGCACACGGATTTCA 957
Query 1037 AACGAATTGGGAGCGGGTAATCCCGAGGTTGCGAGGCTGGCAGTGTTTGCCGGTATATTC 1096
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||
Sbjct 958 AACGAATTGGGAGCGGGGAATCCCGAGGTTGCTAGGCTGGCAGTGTTCGCCGGTATTTTC 1017
Query 1097 CTTTGGTTCCTAGAGGCTACCATTTGTAGCACACTTCTCTTCATTTGTAGAGATATCTTC 1156
|| |||||||||||||||||||||||||||||||||||||||| || | | ||||||||
Sbjct 1018 CTGTGGTTCCTAGAGGCTACCATTTGTAGCACACTTCTCTTCACGTGCAAAAATATCTTC 1077
Query 1157 GGCTACGCCTTTAGCAATAGCAAAGAAGTTGTGGACTATGTCACAGAGCTATCTCCTTTG 1216
|| || ||||| |||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct 1078 GGGTATGCCTTCAGCAATAGCAAAGAAGTTGTGGACTATGTCACGGAGCTATCTTCTCTG 1137
Query 1217 CTTTGTATCTCATTTTTGGTTGATGGATTTTCTGCAGTGCTTGGTGGGGTTGCTAGGGGA 1276
|||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1138 CTTTGTCTCTCATTTATGGTTGATGGATTTTCTTCAGTGCTTGATGGGGTTGCTAGGGGA 1197
Query 1277 AGTGGATGGCAACATATTGGAGCTTGGGCAAATGTGGTGGCTTACTATCTCCTAGGAGCT 1336
||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGTGGGTGGCAAAATATTGGCGCTTGGGCAAATGTGGTGGCTTACTATCTCCTAGGAGCT 1257
Query 1337 CCGGTTGGACTTTTCTTAGGATTTTGGTGTCACATGAATGGTAAAGGGCTATGGATCGGT 1396
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1258 CCGGTTGGACTTTTCTTAGGATTTTGGTGTCACATGAACGGTAAAGGGCTATGGATTGGT 1317
Query 1397 GTGGTGGTTGGGTCTACGGCGCAAGGAATCATACTAGCTATAGTCACTGCTTGCATGAGT 1456
||||| |||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1318 GTGGTCGTTGGGTCTATGGCTCAAGGCATCATACTAGCTATAGTTACTGCTTGCATGAGT 1377
Query 1457 TGGAACGAGCAGGCTGCCAAGGCAAGACAGA-GAATAGTTGTAAGAAC 1503
||| | ||||||||||||||||||||| | | | ||||||| ||||||
Sbjct 1378 TGGGAGGAGCAGGCTGCCAAGGCAAGA-ATACGGATAGTTGGAAGAAC 1424
> Ahg480060 jgi|Araly1|480060|fgenesh2_kg.3__2761__AT2G04040.1
Length=1483
Score = 662 bits (358), Expect = 0.0
Identities = 1045/1368 (76%), Gaps = 82/1368 (6%)
Strand=Plus/Plus
Query 167 GAGCTCAAGAACCTCAGCCGCATGG-CGCTGCCTATGGCCACCGTGACTGTTGCTCAATA 225
||||| ||||| || |||||| ||| |||| ||||||||||||||||| ||||||| ||
Sbjct 83 GAGCTAAAGAAACTGAGCCGCTTGGCCGCT-CCTATGGCCACCGTGACCATTGCTCAGTA 141
Query 226 TC-TATTACCCGTTATCTCAGTCATGGTCGCCGGCCACCGCAGCGAACTCCAGCTCTCAG 284
| |||| || || ||||||||||||||||| |||||| | |||| ||||||||||| |
Sbjct 142 -CTTATTGCCTGTCATCTCAGTCATGGTCGCTGGCCACAACGGCGAGCTCCAGCTCTCCG 200
Query 285 GCGTTGCTCTTGCCACTTCTTTTACAAACGT-ATCCGGCTTCAGTGTCATGTTTGGTTTA 343
| || |||||||| || || || |||||||| | |||| ||||| | |||| ||| |||
Sbjct 201 GTGTGGCTCTTGCAACCTCCTTCACAAACGTCA-CCGGTTTCAGCATTATGTGTGGATTA 259
Query 344 GCGGGTGCACTTGAAACTCTATGTGGCCAAGCTTATGGAGCAAAACAATACG-CGAAAAT 402
| |||||||||||||||||| |||||||||||||||||||| |||||||||| | |||||
Sbjct 260 GTGGGTGCACTTGAAACTCTTTGTGGCCAAGCTTATGGAGCCAAACAATACGAC-AAAAT 318
Query 403 CGGAACTTACACTTTCTCTGCAATAGTC-TCAAACGTACCTATAGTTG-TT-CTCATATC 459
|||||||||| | | ||||||||| | | || ||| || | | | ||| || ||||||||
Sbjct 319 CGGAACTTACGCATACTCTGCAATTG-CTTCCAACATAAC-A-ATTTGTTTCCTCATATC 375
Query 460 GATTCTCTGGTTTTACATGGACAAA-CTCTTTG-TTTCACTTGGACAAGATCCTGACATC 517
||||||||| ||||||| || ||| || ||| || | || |||||||| ||||| ||
Sbjct 376 AATTCTCTGGCTTTACATTGA-AAAGATC-TTGATTGCTCTAGGACAAGACCCTGAAAT- 432
Query 518 TCCAAG-GTAGCTGGTTCTTACGCGGTTTGTCTTATACCGGCATTGTT-AGCTCAAGCG- 574
| |||| | ||||| || ||||| |||| || |||||| | || || || ||||||
Sbjct 433 TTCAAGAATCGCTGGCTCCTACGCCTTTTGGCTCATACCGACTTTATTCGGC-CAAGCGA 491
Query 575 GTGCAACA-ACCTTTGACTCGGTTTCTCCAGACTC-AGGGTTTGGTTCTTCCTCTTCTCT 632
|| || ||| || | |||||||| | ||| | |||| |||||||||||||| ||||
Sbjct 492 TTG--TCATACCACTGTCCCGGTTTCTGCTGACACAAGGG-TTGGTTCTTCCTCTGCTCT 548
Query 633 ACTGTGCCATAACCACCCTTTTGTTCCATATACCAGTTTGTTTGA-TTCTGGTTTACGCG 691
| |||| | || |||||||||||||| | ||||||| || || |||||| | |
Sbjct 549 TCACTGCCGTGACTACCCTTTTGTTCCACGTTTTTGTTTGTTGGACTT-TGGTTTTCTTG 607
Query 692 TTTGGTCTTGGAAGCAATGGAGCC-GCCTTGGCTATTGGTTTGTCTTACTGGTTTAACGT 750
|||||||| ||||| |||||| || ||| |||||| | || |||||| ||||||| |||
Sbjct 608 TTTGGTCTGGGAAGTAATGGA-CCTGCCATGGCTACTAGTGTGTCTTTCTGGTTTTACG- 665
Query 751 CT-TGATTCT-TGC-TTTATATGTGAGATTTTCAAGTTCTTGCGAGAAGACTCGCGGCTT 807
|| |||| || | | | | ||||||| ||| || || |||||||||||||||||||| ||
Sbjct 666 CTGTGATACTCT-CATGT-TATGTGAAATTCTCCAGCTCTTGCGAGAAGACTCGCGGATT 723
Query 808 TGTGTCTGATGATTTCGTGT-TGAGTGTCAAGCAGTTTTTTCAGTATGGAATACCTTCGG 866
||| || || |||| |||| | | |||||||||| || || || ||||| || || |
Sbjct 724 TGTATCCGAAAATTTTGTGTCT-TCTATCAAGCAGTTCTTCCAATACGGAATCCCATCAG 782
Query 867 CAGCAATGA-CAACCATAGAGTGGTCATTGTTTGAGTTCCTTATATTAT-CTTCAGGACT 924
| ||||||| || |||| |||| | |||||| | || ||| | | | ||||| ||
Sbjct 783 CTGCAATGATTTGCC-TAGAATGGTGGCTATTTGAGATACTCATACTCTGC-TCAGGTCT 840
Query 925 CCTCCCAAACCCGAAACTCGAGACCTCTGTTCTTTCCATTTGTCTTACAACCTCATCTCT 984
||||| |||||||||||||||||||||||||||||||| |||||||||| | || |
Sbjct 841 TCTCCCTAACCCGAAACTCGAGACCTCTGTTCTTTCCATATGTCTTACAATAGAAACTTT 900
Query 985 CCACTATGTCATTCCAA-TGGGTATTGGG-GCGGCTG-GAAGTATACGGGTTTCAAACGA 1041
|||||||| ||| || ||| | | | ||||||| || | | ||| || |||||| |
Sbjct 901 GCACTATGTGATTGCAGCTGG--AGTCGCTGCGGCTGTGA-GCACACGTGTATCAAAC-A 956
Query 1042 ATT-GGGAGC-GGGTAATCC-CGAGGTTGCGAGGCTGGCAGTGTTTGCCGGTATAT-TCC 1097
||| |||||| ||| ||||| | || |||| ||| | |||| || || || | | ||
Sbjct 957 ATTTGGGAGCTGGG-AATCCTCAAG-TTGCTAGGGTTTCAGTATTAGCAGGGCTCTGTC- 1013
Query 1098 TTTGGTTCCTAGAGGCTACCATT-TGTAGCACACTTCTCTTCAT-TTGTAGAGAT-ATCT 1154
| ||| | |||| | | | || | ||||| |||||||||| || || || |||
Sbjct 1014 TCTGGATAGTAGAATC-AGCTTTCTTTAGCATACTTCTCTTCGCCTTC-AG-GAACATCA 1070
Query 1155 TCGGCTACGCCTTTAGCAATAGCAAAGAAGTTGTGGACTATGTCACAGAGCT-ATCTCCT 1213
| |||||||| || ||||| |||||||||||| ||||||||||| | || || | |||||
Sbjct 1071 TAGGCTACGCATTCAGCAACAGCAAAGAAGTTTTGGACTATGTCGCTGACCTGA-CTCCT 1129
Query 1214 TTGCTTTGTATCTCATTTT-TGGTTGATGGATTTTCTGCAGTGCTTGGTGGGGTTGCTAG 1272
||||| ||| |||| ||| | | || || || | ||||| ||| ||||||||||||
Sbjct 1130 TTGCTCTGTCTCTC-TTTCATCCTCGACGGCTTCACAGCAGTTCTTAATGGGGTTGCTAG 1188
Query 1273 GGGAAGTGGATGGCAACATATTGGAGCTTGGG-CAA-A-TGTGGTGGCTTACTATCTCCT 1329
|||||||| |||||||| |||||||||||| ||| | ||| | |||| |||||| |
Sbjct 1189 AGGAAGTGGGTGGCAACACATTGGAGCTTGGAACAATACTGTT-T--CTTATTATCTCGT 1245
Query 1330 AGGAGCTCCGGTTGGACTTTTCTTAGGATTTTGGTGTCACAT-GAATGGTAAAGGGCTAT 1388
||||||||| |||||| ||| ||||| ||| || | | ||| || ||||| || |
Sbjct 1246 AGGAGCTCCTGTTGGAATTTACTTAGC-TTTCAGTCTTGGGTTGAACGGAAAAGGACTTT 1304
Query 1389 GGAT-CGGTGTGGTGGTTGGGTCTACGGCGCAAGGAA-TCATACTAGCTATAGTCACTGC 1446
|| | |||||| |||||||| ||||| | |||| | | ||||| ||||| ||||| |
Sbjct 1305 GG-TGCGGTGTTGTGGTTGGATCTACTGTACAAGCTACT-ATACTGGCTATTGTCACAAC 1362
Query 1447 TTGCATGAGTTGGAACGAGCAGGCTGCCAAGGCAAG-ACAGAGAATAG 1493
|| ||| | |||||| || ||||||| ||||| || | |||||||||
Sbjct 1363 TTCCATAAATTGGAAGGAACAGGCTGAGAAGGCTAGGA-AGAGAATAG 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62277550575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5