BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04115.1 Length=623 Score E Sequences producing significant alignments: (Bits) Value Ahg342754 jgi|Araly1|342754|fgenesh1_pg.C_scaffold_3002517 189 2e-47 > Ahg342754 jgi|Araly1|342754|fgenesh1_pg.C_scaffold_3002517 Length=357 Score = 189 bits (102), Expect = 2e-47 Identities = 121/130 (93%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 307 ATGGAGTTTCATTTTAATCTTCAAGTATACAGAGCAGCTGCAACTGAACGATGTAATCAG 366 ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1 ATGGAGTTTTATTTTAATCTTCAAGTATACAGAGCAGCTGGTACTGAACGATGTGATCAG 60 Query 367 TATCGCTCATGGACTGCTAAGCCTGATGGAATTTGGTTTAGAAGAGATCGTA-ATAAACC 425 |||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||||| Sbjct 61 TATCGCTCATGGACTGCTAAACCTGATGGAATTTGGTTTACAAGAGATCGTTCA-AAACC 119 Query 426 GTCGGGACAT 435 |||||||||| Sbjct 120 GTCGGGACAT 129 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22797504366 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5