BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G04115.1

Length=623
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg342754 jgi|Araly1|342754|fgenesh1_pg.C_scaffold_3002517           189    2e-47


> Ahg342754 jgi|Araly1|342754|fgenesh1_pg.C_scaffold_3002517
Length=357

 Score =  189 bits (102),  Expect = 2e-47
 Identities = 121/130 (93%), Gaps = 2/130 (2%)
 Strand=Plus/Plus

Query  307  ATGGAGTTTCATTTTAATCTTCAAGTATACAGAGCAGCTGCAACTGAACGATGTAATCAG  366
            ||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||
Sbjct  1    ATGGAGTTTTATTTTAATCTTCAAGTATACAGAGCAGCTGGTACTGAACGATGTGATCAG  60

Query  367  TATCGCTCATGGACTGCTAAGCCTGATGGAATTTGGTTTAGAAGAGATCGTA-ATAAACC  425
            |||||||||||||||||||| ||||||||||||||||||| ||||||||||  | |||||
Sbjct  61   TATCGCTCATGGACTGCTAAACCTGATGGAATTTGGTTTACAAGAGATCGTTCA-AAACC  119

Query  426  GTCGGGACAT  435
            ||||||||||
Sbjct  120  GTCGGGACAT  129



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22797504366


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5