BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04160.1
Length=2552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930737 jgi|Araly1|930737|scaffold_303194.1 3609 0.0
> Ahg930737 jgi|Araly1|930737|scaffold_303194.1
Length=2368
Score = 3609 bits (1954), Expect = 0.0
Identities = 2237/2374 (94%), Gaps = 17/2374 (1%)
Strand=Plus/Plus
Query 26 aagaagaagagagaagaagaagaagaaTGAAGCTAACACATAACTTCTCGTttc--ttc- 82
|||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 3 AAGAAGAAGA-AGAAG-AGAAGAAGAATGAAGCTTACACATACCTTCTCGTTTCTTTTCT 60
Query 83 ttcttcttcttcttGTTCACATGAGCTCGAAACACATTCTTGCTTCTAAAGATTCGTCTT 142
||||||| |||||||| |||| ||||||||||| || |||||||||||||||||||||||
Sbjct 61 TTCTTCTCCTTCTTGTCCACACGAGCTCGAAACCCACTCTTGCTTCTAAAGATTCGTCTT 120
Query 143 CATATGTGGTGTACTTCGGAGCTCACTCTCATGTCGGAGAGATAACAGAAGATGCCATGG 202
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 121 CATATGTGGTGTACTTTGGAGCTCACTCTCATGTCGGAGAGATAACTGAAGAAGCCATGG 180
Query 203 ATCGAGTCAAAGAAACTCACTACGACTTTCTTGGT-TCCTTCACTGGAAGCCGTGAGAGA 261
|||| ||||||||||| |||||||||||||||||| | ||||| ||||||||||||||
Sbjct 181 ATCGCGTCAAAGAAACCCACTACGACTTTCTTGGTAT-CTTCATTGGAAGCCGTGAGATT 239
Query 262 GCCACAGACGCCATTTTCTACTCATACACAAAGCACATCAACGGATTCGCTGCTCATCTA 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCCACAGACGCCATTTTCTACTCATACACAAAGCACATCAACGGATTCGCTGCTCATCTG 299
Query 322 GACCACGACCTTGCTTATGAAATCTCCAAACACCCTGAAGTTGTGTCTGTCTTCCCAAAC 381
||||||||||| || |||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 300 GACCACGACCTCGCATATGCAATCTCCAAACACCCTGAAGTTGTGTCTGTATTCCCAAAC 359
Query 382 AAAGCTTTAAAGCTTCACACGACTCGATCATGGGACTTTTTGGGTTTGGAACATAACTCT 441
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 AAAGCCTTGAAGCTTCACACGACTCGATCATGGGACTTCTTGGGTTTGGAACATAACTCT 419
Query 442 TACGTTCCTTCCTCTTCCATTTGGAGAAAGGCTAGGTTCGGAGAAGATACCATTATTGCA 501
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 420 TACGTTCCTTCCTCTTCCATTTGGAGAAAGGCTAGATTCGGAGAAGATACCATTATCGCA 479
Query 502 AATCTCGATACAGGTGTGTGGCCAGAATCAAAGAGCTTTAGAGATGAAGGCTTGGGACCA 561
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AATCTCGATACGGGTGTGTGGCCAGAATCAAAGAGCTTTAGAGATGAAGGCTTGGGACCA 539
Query 562 ATTCCTTCAAGATGGAAGGGAATATGTCAAAACCAAAAAGATGCCACTTTCCATTGCAAT 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTCCTTCAAGATGGAAGGGAATATGTCAAAACCAAAAAGATGCCACTTTCCATTGCAAT 599
Query 622 AGGAAACTGATAGGAGCAAGGTAC-TTCAACAAGGGCTACGCAGCCGCCGTAGGACATCT 680
||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |||
Sbjct 600 AGGAAACTGATCGGAGCAAGGTACTTTC-ACAAGGGCTACGCAGCCGCCGTAGGACCTCT 658
Query 681 CAACTCAAGCTTCGACTCTCCACGTGATCTCGACGGCCATGGCTCCCACACTCTCTCCAC 740
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAACTCAACCTTCGAGTCTCCACGTGATCTCGACGGCCATGGCTCCCACACTCTCTCCAC 718
Query 741 CGCCGCCGGAGATTTTGTTCCTGGAGTCAGCATCTTCGGCCAAGGCAACGGCACGGCCAA 800
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 719 CGCCGCCGGAGATTTCGTCCCTGGAGTTAGCATCTTCGGCCAAGGCAACGGCACGGCAAA 778
Query 801 AGGTGGCTCCCCTCGCGCCAGAGTGGCCGCGTACAAAGTCTGCTGGCCGCCAGTCAAAGG 860
||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct 779 AGGTGGCTCTCCTCGGGCCAGAGTAGCCGCATACAAAGTCTGTTGGCCACCAGTCAAAGG 838
Query 861 CAACGAATGCTACGACGCAGACGTCCTCGCTGCTTTCGACGCTGCCATACACGACGGAGC 920
||| || ||||||||||| ||||||||||| ||||| || ||||||||||||||||||||
Sbjct 839 CAATGAGTGCTACGACGCCGACGTCCTCGCCGCTTTTGATGCTGCCATACACGACGGAGC 898
Query 921 TGACGTCATATCCGTCTCTCTAGGCGGCGAGCCTACCTCGTTTTTTAACGACAGTGTCGC 980
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 899 TGACGTCATATCTGTCTCTCTAGGCGGCGAGCCTACCTCGTTTTTTAACGATAGTGTCGC 958
Query 981 TATTGGTTCCTTTCACGCCGCTAAGAAGCGGATCGTGGTTGTTTGCTCTGCCGGAAACTC 1040
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 959 TATTGGTTCGTTTCACGCCGCTAAGAAGCGGATCGTGGTTGTTTGCTCCGCCGGAAACTC 1018
Query 1041 TGGACCGGCAGATAGTACGGTTTCTAATGTCGCGCCATGGCAGATTACCGTTGGTGCTAG 1100
||||||||| |||||||||||||| || |||||||| |||| ||| ||||| || |||||
Sbjct 1019 TGGACCGGCGGATAGTACGGTTTCCAACGTCGCGCCGTGGCTGATCACCGTCGGAGCTAG 1078
Query 1101 CACCATGGACCGTGAGTTTGCTAGCAATCTTGTTCTCGGTAATGGAAAACATTACAAGGG 1160
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1079 CACTATGGACCGTGAGTTTGCTAGCAACCTTGTTCTCGGTAATGGAAAACATTACAAGGG 1138
Query 1161 ACAAAGCTTGTCATCCACGGCATTGCCACATGCTAAGTTCTATCCAATTATGGCATCTGT 1220
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ACAAAGCTTGTCATCCACAGCATTGCCACATGCTAAGTTCTATCCAATTATGGCATCTGT 1198
Query 1221 AAATGCAAAAGCTAAGAACGCTTCAGCTTTGGATGCACAATTATGCAAACTTGGATCGCT 1280
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1199 AAATGCAAAAGCTAAGAACGCTTCAGCTTTGGATGCACAATTGTGCAAACTTGGATCGCT 1258
Query 1281 TGACCCTATAAAGACAAAGGGAAAGATATTAGTGTGTCTCAGAGGGCAGAACGGGAGGGT 1340
||||||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||
Sbjct 1259 TGACCCTATAAAGGCAAAGGGGAAGATATTAGTGTGTCTCAGAGGACAGAACCCGAGGGT 1318
Query 1341 GGAAAAGGGTCGGGCCGTGGCTTTAGGGGGTGGCATAGGGATGGTTCTTGAGAACACTTA 1400
|||||||||||||| |||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 1319 GGAAAAGGGTCGGGTGGTGGCTTTAGCTGGTGGCGTAGGGATGGTTCTTGAGAACAC-TA 1377
Query 1401 -TGTCACCGGGAATGAT-TTACTCGCTGACCCGCATGTCCTTCCAGCCACACAGCTCACT 1458
|||||||||||||||| | || |||||| ||||||||||| ||||| ||||||||||||
Sbjct 1378 TTGTCACCGGGAATGATCTAAC-CGCTGATCCGCATGTCCTCCCAGCTACACAGCTCACT 1436
Query 1459 TCTAAGGATAGTTTTGCTGTGTCAAGATATATCAGCCAAACCAAGAAGCCGATTGCACAC 1518
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1437 TCTAAGGATGGTTTTGCTGTGTCAAGATATATCAGCCAAACCAAGAAGCCGATTGCGCAC 1496
Query 1519 ATTACTCCTTCAAGGACAGATTTGGGACTAAAACCAGCGCCTGTAATGGCTTCATTTTCT 1578
||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1497 ATTACTCCTTCTAGGACAGATTTAGGATTAAAACCAGCGCCTGTAATGGCTTCATTTTCT 1556
Query 1579 TCAAAAGGTCCAAGCATAGTGGCTCCTCAGATTCTGAAGCCTGACATAACTGCTCCTGGT 1638
|| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TCTAAGGGTCCAAGCACAGTGGCTCCTCAGATTCTGAAGCCTGACATAACTGCTCCTGGT 1616
Query 1639 GTGAGTGTGATCGCTGCCTACACTGGAGCAGTCTCTCCAACA-AACGAACAGTTTGATCC 1697
||||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||||||
Sbjct 1617 GTGAGTGTGATCGCTGCCTACACTGCCGCAGTATCTCCAACAGAAC-AACAGTTTGATCC 1675
Query 1698 TCGACGACTTCTGTTCAATGCTATTTCAGGAACCTCTATGTCTTGTCCTCATATCTCTGG 1757
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1676 TCGACGACTTCTGTTCAATGCTATTTCAGGAACCTCCATGTCTTGTCCTCATATCTCGGG 1735
Query 1758 CATTGCGGGTCTTCTCAAAACTCGTTATCCTTCTTGGAGCCCCGCAGCTATCCGCTCTGC 1817
| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1736 CGTTGCGGGTCTTCTCAAAACCCGTTATCCTTCCTGGAGCCCCGCAGCTATCCGCTCTGC 1795
Query 1818 CATCATGACTACCGCAACAATAATGGATGACATTCCTGGACCTATCCAAAATGCAACCAA 1877
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1796 CATCATGACTACCGCAACAACAATGGATGACATTCCTGGACCTATTCAAAATGCAACCAG 1855
Query 1878 CATGAAGGCAACACCTTTCAGTTTTGGGGCAGGACACGTCCAACCAAATTTAGCTGTGAA 1937
|||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1856 CATGAAGGCAACGCCTTTCAGTTTCGGGGCAGGACACGTCCAACCAAATCTAGCTGTGAA 1915
Query 1938 TCCCGGTCTCGTATACGATTTAGGCATCAAGGATTACCTCAACTTCTTATGCTCACTTGG 1997
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1916 TCCCGGTCTCATATACGATTTAGGCGTCAAGGATTACCTCAACTTCTTATGCTCACTTAG 1975
Query 1998 ATACAATGCATCACAAATCTCTGTATTCTCGGGCAACAACTTTACTTGTTCAAGCCCTAA 2057
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||| ||
Sbjct 1976 ATACAATGCATCACAAATCTCTGTCTTCTCGGGAAATAACTTTACTTGTTCAAGCCCCAA 2035
Query 2058 AATCAGTCTTGTTAACCTCAACTATCCTTCCATCACAGTTCCAAACTTAACATCAAGCAA 2117
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 AACCAGTCTTGTTAACCTCAACTATCCTTCCATCACAGTTCCAAACTTAACATCAAGCAA 2095
Query 2118 AGTCACCGTTTCAAGGACTGTTAAAAACGTTGGACGACCTTCGA-TGTATACCGTCAAGG 2176
||||||||| |||||||| ||||||||||||||||||||||||| | ||||| ||| ||
Sbjct 2096 AGTCACCGTCTCAAGGACCGTTAAAAACGTTGGACGACCTTCGACT-TATACTGTCCGGG 2154
Query 2177 TGAATAACCCACAGGGTGTTTATGTCGCGGTGAAGCCAACGAGCTTGAATTTCACCAAAG 2236
|| ||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2155 TGGCTAACCCACAAGGTGTTTATGTCGCGGTTAAGCCAACGAGCTTGAATTTTACCAAAG 2214
Query 2237 TTGGAGAGCAAAAGACGTTTAAAGTGATCCTTGTGAAAAGTAAGGGAAATGTGGCTAAGG 2296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 TTGGAGAGCAAAAGACGTTTAAAGTGATCCTTGTGAAAAGTAAGGGAAATGTGGCTAAGG 2274
Query 2297 GCTATGTGTTTGGAGAATTGGTTTGGTCAGACAAGAAGCATCGTGTGAGAAGTCCCATTG 2356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2275 GCTATGTGTTTGGAGAATTGGTTTGGTCAGACAAGAAGCATCGTGTGAGAAGTCCCATTG 2334
Query 2357 TGGTGAAGCTCTAACTTTGAATTTGAGTGCCAAT 2390
|||||||||||||| ||||| ||| |||||||||
Sbjct 2335 TGGTGAAGCTCTAAATTTGATTTTTAGTGCCAAT 2368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96215958870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5