BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04220.1
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480071 jgi|Araly1|480071|fgenesh2_kg.3__2772__AT2G04220.1 1426 0.0
> Ahg480071 jgi|Araly1|480071|fgenesh2_kg.3__2772__AT2G04220.1
Length=915
Score = 1426 bits (772), Expect = 0.0
Identities = 878/927 (95%), Gaps = 15/927 (2%)
Strand=Plus/Plus
Query 1 ATGTCATTTAGATCACATTCGAGAGGGAGTAGTCAATTCGCAGAGAAGGTAACAGAGGAT 60
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTCATTTAGATCACATTCGACAGGGAGTAGTCAATTCGCAGAGAAGATAACAGAGGAT 60
Query 61 CCTGTAACGTACAAGACAGCACAAAGCACCGTGACGTGCATTTACCAAGCGCATATATCC 120
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CCTGTAACGTATAAGACGGCACAAAGTACCGTGACGTGCATTTACCAAGCGCATATATCC 120
Query 121 GGATTCTGGAGGAATGTTACGGTATTGTGGTCAAAGAATCTCATGAATCATTCGCTTATG 180
||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 121 GGATTTTGGAGGAATGTTACGGTATTGTGGTCCAAGAATGTAATGAATCATTCGCTTATG 180
Query 181 GTCATGGTGACAAACGTGGAAGGCGATATGAATTATTGTTGCAAGGTTGATCTGAAGCCT 240
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 181 GTCATGGTGACTAACGTGGAAGGCGATATGAATTATTGTTGTAAGGTTGATCTTAAGCCT 240
Query 241 TGGCATTTTTGGAACAAGAAAGGCTACAAGTCGTTCGATGTGGAAGGTAACCCGGTAGAG 300
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 241 TGGCATTTTTGGAACAAGAAAGGCTATAAGTCGTTTGAGGTGGAAGGTAACCCGGTAGAG 300
Query 301 GTGTATTGGGATTTTAGGTCTGCGAAATTCACGAGTAGTCCAGAGCCGAGCTCGGATTTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GTGTATTGGGATTTTAGGTCTGCGAAATTCACGAGTAGTCCAGAGCCGAGCTCAGATTTC 360
Query 361 TACGTGGCTTTAGTCTCGGAGGAAGAGGTGGTTTTGCTT-GTGGGTGATTACAAGAAGAA 419
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 361 TACGTTGCTTTAGTCTCGGAGGAAGAGGTGGTTTTG-TTGGTGGGTGATTACAAGAAGAA 419
Query 420 AGCTTTCAAGAGAACAAAGTCGAGGCCTGCTTTGGTCGAGGCTGCCTTGTTCTACAAGAA 479
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 420 AGCTTTCAAAAGAACAAAGTCGAGGCCCGCTTTGGTAGAGGCTGCCTTGTTCTACAAGAA 479
Query 480 AGAAAACGTGTTTGGCAAGAAGTGTTTCACCAC-CAGGGCTAAGTTTTACGATAGGAAAA 538
||||||||||||||||||||||||||| || || | |||||||||||||||| |||||||
Sbjct 480 AGAAAACGTGTTTGGCAAGAAGTGTTTTACGACGC-GGGCTAAGTTTTACGACAGGAAAA 538
Query 539 AAGAACACGAGATCATCGTGGAAAGCTCGACCTCCGGG-CCTAAAGAGCCAGAGATGTGG 597
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 539 AAGAACACGAGATCATCGTGGAAAGCTCGACCT-CGGGCCCTAAAGAGCCAGAGATGTGG 597
Query 598 ATTAGCATAGATGGGATTGTGTTGATACAAGTCAAGAATTTGCAATGGAAATTCAGAGGG 657
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 ATAAGCATAGACGGGATTGTGTTAATACAAGTCAAGAATTTGCAATGGAAATTCAGAGGG 657
Query 658 AATCAGACAGTGTTGGTAGATAAACAACCTGTTCAAGTGTTTTGGGACGTGTATGATTGG 717
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 AATCAGACAGTGCTGGTAGATAAACAACCTGTTCAAGTGTTTTGGGATGTGTATGATTGG 717
Query 718 TTGTTCAGCATGCCTGGGACAGGCCATGGTTTGTTCATATTCAAACCAGGGACCACCGAA 777
||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTGTTTAGCACGCCGGGGACAGGCCATGGTTTGTTCATATTCAAACCAGGGACCACCGAA 777
Query 778 GACAGCGACATGGAAGGAAGTGGTCACggtggtggtggtggtggtgAGAGCGATACAAGT 837
|||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 778 GACAGCGACATGGAAGGAAGTGGTCACGGTGGTGGTGG-G------AG--CGATACAAGT 828
Query 838 ACAGGGAGCAGGTATTATTCGACCAAGAGTAGTAACCCTTGGCCGCCAGAGTTTTGCCTT 897
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 829 ACAGGGAGCAGGTATTATTCGACCAAGAGTAGTAACCCTTGGCCGCCGGAGTTTTGCCTT 888
Query 898 TTTCTTCATGCATACAAACTTGAGTAG 924
||||||||||||| ||||||||||||
Sbjct 889 TTTCTTCATGCATGGAAACTTGAGTAG 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5