BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04220.1 Length=1107 Score E Sequences producing significant alignments: (Bits) Value Ahg480071 jgi|Araly1|480071|fgenesh2_kg.3__2772__AT2G04220.1 1426 0.0 > Ahg480071 jgi|Araly1|480071|fgenesh2_kg.3__2772__AT2G04220.1 Length=915 Score = 1426 bits (772), Expect = 0.0 Identities = 878/927 (95%), Gaps = 15/927 (2%) Strand=Plus/Plus Query 1 ATGTCATTTAGATCACATTCGAGAGGGAGTAGTCAATTCGCAGAGAAGGTAACAGAGGAT 60 |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 1 ATGTCATTTAGATCACATTCGACAGGGAGTAGTCAATTCGCAGAGAAGATAACAGAGGAT 60 Query 61 CCTGTAACGTACAAGACAGCACAAAGCACCGTGACGTGCATTTACCAAGCGCATATATCC 120 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 CCTGTAACGTATAAGACGGCACAAAGTACCGTGACGTGCATTTACCAAGCGCATATATCC 120 Query 121 GGATTCTGGAGGAATGTTACGGTATTGTGGTCAAAGAATCTCATGAATCATTCGCTTATG 180 ||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||| Sbjct 121 GGATTTTGGAGGAATGTTACGGTATTGTGGTCCAAGAATGTAATGAATCATTCGCTTATG 180 Query 181 GTCATGGTGACAAACGTGGAAGGCGATATGAATTATTGTTGCAAGGTTGATCTGAAGCCT 240 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 181 GTCATGGTGACTAACGTGGAAGGCGATATGAATTATTGTTGTAAGGTTGATCTTAAGCCT 240 Query 241 TGGCATTTTTGGAACAAGAAAGGCTACAAGTCGTTCGATGTGGAAGGTAACCCGGTAGAG 300 |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct 241 TGGCATTTTTGGAACAAGAAAGGCTATAAGTCGTTTGAGGTGGAAGGTAACCCGGTAGAG 300 Query 301 GTGTATTGGGATTTTAGGTCTGCGAAATTCACGAGTAGTCCAGAGCCGAGCTCGGATTTC 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 301 GTGTATTGGGATTTTAGGTCTGCGAAATTCACGAGTAGTCCAGAGCCGAGCTCAGATTTC 360 Query 361 TACGTGGCTTTAGTCTCGGAGGAAGAGGTGGTTTTGCTT-GTGGGTGATTACAAGAAGAA 419 ||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 361 TACGTTGCTTTAGTCTCGGAGGAAGAGGTGGTTTTG-TTGGTGGGTGATTACAAGAAGAA 419 Query 420 AGCTTTCAAGAGAACAAAGTCGAGGCCTGCTTTGGTCGAGGCTGCCTTGTTCTACAAGAA 479 ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 420 AGCTTTCAAAAGAACAAAGTCGAGGCCCGCTTTGGTAGAGGCTGCCTTGTTCTACAAGAA 479 Query 480 AGAAAACGTGTTTGGCAAGAAGTGTTTCACCAC-CAGGGCTAAGTTTTACGATAGGAAAA 538 ||||||||||||||||||||||||||| || || | |||||||||||||||| ||||||| Sbjct 480 AGAAAACGTGTTTGGCAAGAAGTGTTTTACGACGC-GGGCTAAGTTTTACGACAGGAAAA 538 Query 539 AAGAACACGAGATCATCGTGGAAAGCTCGACCTCCGGG-CCTAAAGAGCCAGAGATGTGG 597 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 539 AAGAACACGAGATCATCGTGGAAAGCTCGACCT-CGGGCCCTAAAGAGCCAGAGATGTGG 597 Query 598 ATTAGCATAGATGGGATTGTGTTGATACAAGTCAAGAATTTGCAATGGAAATTCAGAGGG 657 || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 598 ATAAGCATAGACGGGATTGTGTTAATACAAGTCAAGAATTTGCAATGGAAATTCAGAGGG 657 Query 658 AATCAGACAGTGTTGGTAGATAAACAACCTGTTCAAGTGTTTTGGGACGTGTATGATTGG 717 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 658 AATCAGACAGTGCTGGTAGATAAACAACCTGTTCAAGTGTTTTGGGATGTGTATGATTGG 717 Query 718 TTGTTCAGCATGCCTGGGACAGGCCATGGTTTGTTCATATTCAAACCAGGGACCACCGAA 777 ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TTGTTTAGCACGCCGGGGACAGGCCATGGTTTGTTCATATTCAAACCAGGGACCACCGAA 777 Query 778 GACAGCGACATGGAAGGAAGTGGTCACggtggtggtggtggtggtgAGAGCGATACAAGT 837 |||||||||||||||||||||||||||||||||||||| | || |||||||||| Sbjct 778 GACAGCGACATGGAAGGAAGTGGTCACGGTGGTGGTGG-G------AG--CGATACAAGT 828 Query 838 ACAGGGAGCAGGTATTATTCGACCAAGAGTAGTAACCCTTGGCCGCCAGAGTTTTGCCTT 897 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 829 ACAGGGAGCAGGTATTATTCGACCAAGAGTAGTAACCCTTGGCCGCCGGAGTTTTGCCTT 888 Query 898 TTTCTTCATGCATACAAACTTGAGTAG 924 ||||||||||||| |||||||||||| Sbjct 889 TTTCTTCATGCATGGAAACTTGAGTAG 915 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41248996194 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5