BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04230.1
Length=1930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485281 jgi|Araly1|485281|fgenesh2_kg.5__1273__AT2G04230.1 2141 0.0
Ahg489839 jgi|Araly1|489839|fgenesh2_kg.6__2973__AT4G09900.1 322 6e-87
> Ahg485281 jgi|Araly1|485281|fgenesh2_kg.5__1273__AT2G04230.1
Length=1610
Score = 2141 bits (1159), Expect = 0.0
Identities = 1362/1460 (93%), Gaps = 13/1460 (1%)
Strand=Plus/Plus
Query 376 aaaaaaTCTGAAAGTTTCTTAGCGAATTGTTACCTCTATTAATTTCAATGGAACAGAAAT 435
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 AAAAAATCGGAAGGTTTCTTAGCGAATTGTTACCTCTATTAATTTCAATGGAACAGAAAT 170
Query 436 TCAAAACCGATTCTATGAATGAGGACAGAATCAGTGACTTGCCTGATGCTTTGCTTCTAC 495
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 171 TCAAAACCGATGCTATGAATGAGGACAGAATCAGTGAGTTGCCTGATGCTTTGCTTTTGC 230
Query 496 AGATATTGTCTTCACTTCCGACAGAAAACGCCATAGCCACGAGTGTTTTGTCTAAACGTT 555
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 231 ATATATTGTCTTCACTTCCGACAGAAAACGCCATAGCCACTAGTGTTTTGTCTAAACGTT 290
Query 556 GGAGATCTCTTTGGACTATGTTGCCAAAACTCAAGTTTGATTCCAA-TTTCAATCCTGTG 614
||||||||||||||| ||||||||||||||||||||||| | ||| ||| |||||||||
Sbjct 291 GGAGATCTCTTTGGAAGATGTTGCCAAAACTCAAGTTTGACTGCAACTTT-AATCCTGTG 349
Query 615 TTTGATGATGATAACATAGAT-CCCACTATGTTTTCAGAGAATGTTTACAAGACTTTGTC 673
|||||||| ||||||||||| |||| | ||||||||||||||||||||| ||| |||
Sbjct 350 CTTGATGATTATAACATAGATCCCCA-TGTGTTTTCAGAGAATGTTTACAGGACCTTGAG 408
Query 674 TTTACATAAAGCTCCGGTTCTAGAGAGTTTGCATTTGTCATTTGAAGGTAGAACAGATTG 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 409 TTTACATAAAGCTCCGGTTCTAGAGAGTTTGCATTTGTCATTTGAAGGTAGAACTGATTG 468
Query 734 TTTGCATGTTGGAATATGGATTGCAACAGCATTTGCTCGCGGTGTGCGTAAATTGGTATT 793
|||| |||||||||||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 469 TTTGGATGTTGGAATATGGATCGCAACCGCATTTGCTCGCCGTGTGCGTAAATTGGTATT 528
Query 794 GGATAGTTTCTATCAAGAGGATCAAACTGTCACGCTTCCTAGTGTTTTGTTTAGCTATAA 853
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 529 GGATAGTTTCTATCAAGAGGATCAGACTGTCACGCTTCCGAGTGTTTTGTTTAGCTATAA 588
Query 854 TGATTCACTTGAGATCTTGAAACTCAAGTGTGCTATCGATTTAGACTTTCCTTCTCGGGT 913
|||| |||||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 589 TGATACACTTGAGATCTTGAAACTCAAGTATGCTATTGATTTAGAGTTTCCTTCTCGGGT 648
Query 914 TTGTTTGAAGTCTCTTAGAAAGCTATACCTTGACCAAGTACATTTCAAAGACGAAGAATC 973
|||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||||
Sbjct 649 TTGTTTGAAGTCTCTTAGAAAGCTGCACCTTTACCATGTACACTTCAAAGACGAAGAATC 708
Query 974 TGTTTGCAATCTTTTATGTGGCTGCCCTAGTCTTCAAGATTTGGTCGTGCATAGATATAG 1033
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TGTTTGCAACCTTTTATGTGGCTGCCCTAGTCTTCAAGATTTGGTCGTGCATAGATATAG 768
Query 1034 CAATGCCGATGTGGCGACTTTCACAATTGCGTCGCCGTCATTACAAAGATTGACCATAGA 1093
|||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||
Sbjct 769 CAATGCCGATGTGGCGACTTTCACTATTGCGGCGCCATCATTACAGAGATTGACCATAGA 828
Query 1094 AGATCTTAGACAAGAAGGAGGTTATGGAAATGGAAGCTATGTGATAAATGCCCCTGGTTT 1153
||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct 829 AGATCTTCGCCAAGAAGGAGGTTATGGAAATGGAGGCTATGTTATAAATGCCCCTGCTTT 888
Query 1154 GAAATACTTGAACATCAACGGGGTTATTGATATTGAGTCTTGTTTGATTGACAAGGCACT 1213
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 889 GAAATACTTGGACATCAACGGGTTTATTGATATTGAGTCTTGTCTGATTGACAAGGCACT 948
Query 1214 AGAGTTAGAGGAGGCAAAAATCAGTAACGTTTCTGGTATAACCAATGAGAACATTCTGGA 1273
|||| ||| ||||||||| |||||| ||||||||| |||| | |||||||||||||||||
Sbjct 949 AGAGCTAGTGGAGGCAAAGATCAGTGACGTTTCTGATATAGCTAATGAGAACATTCTGGA 1008
Query 1274 GTCTCTAACTTCAGCCAAACGTCTTATCTTACACTTATCACCCCTTGAGGTTAAAGTTCC 1333
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1009 GTCTCTAACTTCAGCCAAACGTCTTATTTTACACTTATCACCCCTTGAGATTAAAGTTCC 1068
Query 1334 TACTGGTAAAATCTTCGATCAACTAGGCTGTCTAGAGCTACTTACACACGAAAGAGAGTG 1393
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1069 TACTGGTAAAATCTTCGATCAGCTAGTTTGTCTAGAGCTACTTACACACGAAAGAGAGTG 1128
Query 1394 GTGGAATCTGCTTTCGATCATGCTTGATAGTTCTCCTAAACTACAAATCCTCAAGCTCAC 1453
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1129 GTGGAATCTGCTTTCGATCATGCTCGATAGTTCTCCTAAATTACAAATCCTCAAGCTCAC 1188
Query 1454 GGATGTATATCTGCATGACAACAAAACAAATCCGGACGAACGAAAATGGAATCCACCAAA 1513
||| | ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1189 AGATTTCTATCTGCGTGACAACAAAAAAAATCCGGACGAACGAAAATGGAATCCACCTAA 1248
Query 1514 ATGTGCACCGGAATGTTTGTTGTTCCATCTTGAGACATTCTTGTGGATAGGATATGAATG 1573
||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1249 ATGTGTACCGGAATGTTTGTTGTTCCATCTTGAGACATTCGTGTGGATAGGATACGAATG 1308
Query 1574 GCAACGAGGTGATGAGAAAGAAGTTGCCACATACATCCTAGAAAACGCAAGACGGTTGAA 1633
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1309 GCAACGAGGAGATGAGAAAGAAGTGGCCACATACATCCTAGAAAACGCAAGACGGTTGAA 1368
Query 1634 GAAAGCAACTTTCTCCACAAAACGCATCGGAAGGG-AAAAGCTCGAAGATTTTG-AGAAG 1691
||||||||||||||||||||||||||| ||| ||| ||||||||||| | ||| | |||
Sbjct 1369 GAAAGCAACTTTCTCCACAAAACGCAT-GGAGGGGGAAAAGCTCGAA-AGGTTGGAAAAG 1426
Query 1692 AGGCGTGAGATGCTCAACGAGTTGGCTATTGTGCTCTGGGATTCAAATTCATGTCACCTT 1751
|| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1427 AGACGTGAGATGCTCAACGAGTTGGCTAGTGTGCTCTGGGATTCATATTCATGTCACCTT 1486
Query 1752 GTGTTCGAATCTACTTAATATCTTAGACTTGTATT-T-T-GTT--GGCCATTGGGAAATG 1806
|||||||||||||||||||||||||||||| |||| | | ||| |||||||||||||||
Sbjct 1487 GTGTTCGAATCTACTTAATATCTTAGACTTTTATTCTGTTGTTTTGGCCATTGGGAAATG 1546
Query 1807 TTTACTTGGCTGCTCTACCA 1826
| | ||| |||||||||||
Sbjct 1547 TAAAATTGACTGCTCTACCA 1566
> Ahg489839 jgi|Araly1|489839|fgenesh2_kg.6__2973__AT4G09900.1
Length=1266
Score = 322 bits (174), Expect = 6e-87
Identities = 206/221 (93%), Gaps = 3/221 (1%)
Strand=Plus/Minus
Query 95 TAGACATGGATCCATCAAATCTCTGAGACACCTGAGCTTGATGAATAGCCATAGACAAAG 154
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 375 TAGACATAGATCCATCAAATCTCTGAGAAACCTGAGCTTGATGAATAGCCATAGACAAAG 316
Query 155 CTCT-TCGATGCAAATTCTCTTCAACAGCAATCAACTTCCTCTGTGAACGATTCATTCTC 213
|| | ||||||||||||||||||| |||||| ||||||||| ||||||| ||||| ||||
Sbjct 315 CT-TGTCGATGCAAATTCTCTTCATCAGCAAGCAACTTCCTTTGTGAACAATTCACTCTC 257
Query 214 TTGCTTCTGGATCAATCTCCTCCACTTCTGATAACAACATCTTTCTTCTTCATGCAGATT 273
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TTGCTTCTGGATCCATCTCCTCCACTTCTGATAACAACATCTTTCTTCTTCATGCAGATT 197
Query 274 ACTCTGTTACCCATTATTCACAAAACCCTGAATTTTGCCCA 314
||||||||||||||| || ||||| || ||||||| |||||
Sbjct 196 ACTCTGTTACCCATTTTT-ACAAATCCTTGAATTTAGCCCA 157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72523826480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5