BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04235.1
Length=3981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480072 jgi|Araly1|480072|fgenesh2_kg.3__2773__AT2G04235.1 2021 0.0
> Ahg480072 jgi|Araly1|480072|fgenesh2_kg.3__2773__AT2G04235.1
Length=3771
Score = 2021 bits (1094), Expect = 0.0
Identities = 1469/1641 (90%), Gaps = 61/1641 (4%)
Strand=Plus/Plus
Query 961 CTGCAGGAATCAGGAAGCCAACGTTACACAAAAGAGGCTTCCCTTTCCTCGTCAACTATT 1020
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 895 CTGCAGGAATCAGGAAGCTTACGTTACACAAAAGAGGCTTCCCTTTCCTCGTCAGCTATT 954
Query 1021 AGAAGGCAAAGTGCGTTTTTAGTTGGTATGTTGCCTCAGTCTTTATCTTGTGTTACTCCT 1080
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 955 AGAAGGCAAAGTGCGTTTTTAGTTGGTATGTTGCCTCAGTCCTTATCTTGTGTTACTCCT 1014
Query 1081 TCCCCTACACAGGGTGGAAGCTTTATGAGCAGGGAGACTCGGGCACTAGTTGAGAGCTTG 1140
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1015 TCCCCTAAACAGGGTGGAAGCTTTATGAGCAGGGAAACTCGGGCACTAGTTGAGAGCTTG 1074
Query 1141 TCAACCATTCAGAAAAGCAAATCCAGACTTGGTTTGATTCCACCGTCACCTGGTTCTGCT 1200
||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1075 TCAACTATTCAGAAAAGCAAATCCAGACTTGGATTGATTCCACCCTCCCCTGGTTCTGCT 1134
Query 1201 CTTTCTCAAAGAATTGAGAAATCAAAGCTTCAATTATCCGGACACCGTTTTCTGACTACC 1260
||||||||||||||||||||||||||||| ||||||||||||||||||| | || ||||
Sbjct 1135 CTTTCTCAAAGAATTGAGAAATCAAAGCTACAATTATCCGGACACCGTTCTATGGTTACC 1194
Query 1261 CCATCAATTGGGAGGGAAGAAATAGGTGTACTCAGGGATAAGCATGCGGATATACCCATT 1320
||| ||| |||||||||||| |||||||| |||||||| |||||||| ||||||||||||
Sbjct 1195 CCAGCAACTGGGAGGGAAGAGATAGGTGTCCTCAGGGAAAAGCATGCAGATATACCCATT 1254
Query 1321 ACCAACTTGGAGGCTTTGTTATCTAAACATGATAATAGAACACCAATTTCTGAAGAGAAA 1380
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1255 ACCAACTTGGAGGATTTGTTATCTAAACATGATAATAGAACACCAATTTCTGAAAAGAAA 1314
Query 1381 AGCATGCCAGATAAATGCATTAGTGGTGCATTGAGCCATGCTGTTGACACTAGCGATGAT 1440
||||| |||||||| || ||||||||||||| | || ||||||||| |||| |||||||
Sbjct 1315 AGCATCCCAGATAAGTGTGTTAGTGGTGCATTCAACCCTGCTGTTGAAACTATCGATGAT 1374
Query 1441 AATAGAACACCAGTTCCAGAAGAGAAAGGCATACCAGATCAATGTATTAGTGGTGCATTG 1500
|||||||||| |||| ||||| |||||||||| ||||||| ||| | |||||||||||||
Sbjct 1375 AATAGAACACAAGTTTCAGAAAAGAAAGGCATCCCAGATCGATGCACTAGTGGTGCATTG 1434
Query 1501 AGCCATGCTGTTGACACTAGCGATGATAATAAAACACCAGTTCCAGAAGAGAAAGGCATA 1560
|||| ||||||||||||||||| ||||| || |||||||| |||| ||||||||||
Sbjct 1435 AGCCCTGCTGTTGACACTAGCGTTGATAG-AA--CACCAGTTTTAGAAAAGAAAGGCATC 1491
Query 1561 CCAGATCAATGCAGTAGTGGTGCATTGAACCCTGCCGTTGACACTAGCGATGATAATAGA 1620
||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 1492 CCAGATCGATGCACTAGTGGTGCATTGAGCCCTGCTGTTGACACTAGCGATGATA---GA 1548
Query 1621 ACACCAGTT-CAAGAAAAGAAAGGCTTGCCAGATCAATGCAGTAGTGGTGCATTGAGCCC 1679
||||||||| || ||||||||||| ||| || | ||| || || || | |||
Sbjct 1549 ACACCAGTTTCA-GAAAAGAAAGGATTG--AGCCC--TGCTGT--TGA--CACT-AGC-- 1596
Query 1680 TGCTGTTGACACTAGCGATGACAGGCCACCAGTTTCTGAAAAGAAAGGCATACCAGATCA 1739
| || | ||| | ||| ||| |||||||||||||||||||| ||||||||
Sbjct 1597 -GATG---A---TAG--A--ACA--CCA---GTTTCTGAAAAGAAAGGCATGCCAGATCA 1640
Query 1740 ACACAGTTGCGGTGCATTGATTCCTGCTGTTGACATTAGCGATGTGTTTGCACGGAGAAG 1799
|||| |||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 1641 ACACTGTTGTGGTGCATTGATCCCTGCTGTTGACATAAGCGATGTGTTTGCACGCAGAAG 1700
Query 1800 TCCAGAAGGAAATACTAATTCTGAGATAGAAGGTTCACTGCTCTGTAAACAACAACAGAG 1859
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1701 TCCAGAAGGAAATACTAATTCTGAGATAGAAGGTTCACT--T-TGTAAACAACAACAGAG 1757
Query 1860 AAATCAGGCAGCCAGCACCCCTGAGAAGTTTGTGTCATCTCCAACAAATTTGTCAAATGC 1919
||||||| ||| |||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 1758 AAATCAGAAAGCTAGCACCCCTGAGAAGTGTGTGTCATCTCTAACAAATTCGTCAAATGC 1817
Query 1920 AACAAC-GTCAGCATCGGAGAATTTTGTTCCTCTTCAAGATCAAGAGCAGCATAGTAAAG 1978
|| ||| |||||||| | |||| |||| | ||| || |||||||||||||||||||||||
Sbjct 1818 AA-AACCGTCAGCATTGAAGAAGTTTGCTACTCGTCCAGATCAAGAGCAGCATAGTAAAG 1876
Query 1979 ACATCGAAAAATCTGAGACTGGGGATGGAAATGTGACCAAGGAATATGCTAGTAATTGTT 2038
| | | | |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1877 -C--C-A----T-TGAGACTGGGGAGGGAAATGTGACCAAGGAATGTGCTAGTAATTGTT 1927
Query 2039 CTATGAATACATTATCTGAGAAAGTGGATTCCCTGCTTGCAGAATCTAGCGTATTACTTA 2098
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1928 CTATGAATACATTATCCGACAAAGTGGATTCCCTGCTTGCAGAATCTAGCGTATTACTTA 1987
Query 2099 CCGATACAGGCTTCTTGAATGGCTCTGCTCAACAAAGAGAGAAGGACAGTGTGCGGAACA 2158
||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 1988 GCGAGACAGGCTTCTTGAATGGCTCTGCTCAACAAAAAGAGAAGGACAGTATGCTGAACA 2047
Query 2159 AAAAGCAAAACAGAACCAATATCAGTGCTGCTCATA-TCCTTCTGAAAGATAATAATCCC 2217
|||| |||||||||||||| ||||||||| | || | || ||||||| |||||||||| |
Sbjct 2048 AAAATCAAAACAGAACCAACATCAGTGCTTCCCAGAGTC-TTCTGAAGGATAATAATCAC 2106
Query 2218 TTTAAAGTCCATTGTGAAACAGAAGTTATCTCAGCTGAAGACTTTACTGCTGTAGCTA-A 2276
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |
Sbjct 2107 TTTAAAGTCCATTGTGAAACAGAAGTTATCTCAGCTGAAGACTTTCCTGCTTTAGTTACA 2166
Query 2277 AGAAAACCTTCCTAGTACCTCTGGCTCTTCATCTGTGGACAGA-A-GCAAGAATGAGGCT 2334
| |||||||||||||||||||||||||| ||||| ||||||| | | | ||||||||||
Sbjct 2167 A-AAAACCTTCCTAGTACCTCTGGCTCTCCATCTATGGACAGGTATG-A-GAATGAGGCT 2223
Query 2335 TCACATGCTAAGGGACCATCCAGATTGAAAAGAAAAGCAGAAGATGTTGATTGTGCTGCT 2394
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 2224 TCACATGCTAAGGGACCATCCAGATTGAAAAGGAAAGCAGAAGATGTTGATTGTGCCGGT 2283
Query 2395 AGAAATTGTAGCCCCAAAGTCGAGAGAAGTACAAAGTATATTTCGAATTCAGTGATGGAA 2454
|||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 2284 AGAAGTTGTAGCCCCAAAGTCGGGAGAAGTACACTGTATATTTCGAATTCAGTGATGGA- 2342
Query 2455 CA-CCCTGATGGAAACATTGATGCTAACGATTGCCGCAGAGTTCGTGAACAAGTGAACTG 2513
|| |||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 2343 CATCCCTAATGGAAACATCGATGCTAACGATTGCCGCAGAGTTCATGAACAAGTGAACTG 2402
Query 2514 GGTAGAAATTCCAGGAAAAGTATCA-AAGGAAATCAATCAAATGCTTGCTCCATTGGCAG 2572
||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 2403 GGTAGAAATTCCAGGAAAAGTATCAGAAA-AAATCAATCAAATGCTTGCTCCCTTGGCAG 2461
Query 2573 ATAAGCTGAACTCAAGACTGA 2593
||||||||||||| |||||||
Sbjct 2462 ATAAGCTGAACTCCAGACTGA 2482
Score = 1842 bits (997), Expect = 0.0
Identities = 1192/1284 (93%), Gaps = 22/1284 (2%)
Strand=Plus/Plus
Query 2673 GAAAGTATGTGACCACTTAAGTGGTGCCAAGACAAAGAGACGTGTTGAGAGTAGATCACT 2732
||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||| |
Sbjct 2481 GAAAGTATGTGACGACTTGCGTGGTGCCAAGACAAAGAGACGTGCTGAGAGCAGATCATT 2540
Query 2733 ACTCTGCAAGTTAGCATACGATAAAGCTAAACTTGAGTTGCTGCACCTCAAGAAGGAGAT 2792
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 2541 ACTCTGCAAGTTAGCATACGAAAAAGCCAAACTTGAGTTGCTGCACCTCAAGAAAGAGAT 2600
Query 2793 AATGATGAAAAAGTTTCAAGCAGTGAGCACCGGTGTACAAACATCCGAAACATTGAGGTT 2852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2601 AATGATGAAAAAGTTTCAAGCAGTGAGCACCGGTGTACAAACATCCGAAACATTGAGGTT 2660
Query 2853 GAATTGTGCTAACTTTCTACGTCAACATGGTTTCCGTTCTACTGGCTTGTTAAATCCTGA 2912
||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 2661 GAATTGTGCGAACTTTCTACGTCAACATGGTTTCCATTCTACTAGCTTGTTGAATCCTGA 2720
Query 2913 CCAAGCACAAGAGGTTATTATAACTGGCAAACGAGCAGAGATAACACAGGAGATCAAAGA 2972
|||||| ||||||||| | | ||| ||||| |||||||||||||||||||||||||||
Sbjct 2721 CCAAGCTCAAGAGGTT-GT-T-ACTAGCAAAGGAGCAGAGATAACACAGGAGATCAAAG- 2776
Query 2973 AATT-GACTCAAAAATCAAGAACTTGATTCAATGTTTTACGGCTTGCGACACGATGACAG 3031
|||| ||||| |||||||||||||||||||||||||||||| | | ||||||| |||||
Sbjct 2777 AATTGGACTCCAAAATCAAGAACTTGATTCAATGTTTTACGACGTCCGACACGGTGACA- 2835
Query 3032 GGCCGCAGCCGGCATATGCAGACACTATTATGATTGCTGAAGAGACCTTGAAAAAGAGAA 3091
|| | | ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2836 GG-AG-AACCGGCATATGCAGACACTATTATGATTGCTGAAGATACTTTGAAAAAGAGAA 2893
Query 3092 TGAGTTGCAGATCCCTACGTCAGGATATTCTGATTTGGAAAGTTGACAGTTTAGGTGAAT 3151
|||||||||||||| ||||||||||||||||| | ||| ||||||||||||| ||||| |
Sbjct 2894 TGAGTTGCAGATCCATACGTCAGGATATTCTGGTCTGGCAAGTTGACAGTTTGGGTGAGT 2953
Query 3152 GGAACGATTGTCAGAGTATTGTTCTAAACTATAGTGGCGTGTTCAACCAAAGGCTCACAC 3211
|||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2954 GGAATGATTGTCAGAGCATTGTTCTAAACTATAGTGACGTGTTCAACCAAAGGCTCACAT 3013
Query 3212 TAAAGCCTGGCCATCCTTCATGTGTACTAGTTTCAAACAGTTTGAGTGATACATTCGTTA 3271
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3014 TAAAGCCTGGTCATCCTTCATGTGTACTAGTTTCAAACAGTTTGAGTGATAAATTCGTTA 3073
Query 3272 AGCATTTCCCAGAGATGAATGTTTCAATTGCGTTTAACTCTATGTTTAACGCTGAAGACT 3331
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3074 AGCATTTCCCAGAGATGAATGTTTCAATTGCGTTTAACTCTTTGTTTAACGCTGAAGACA 3133
Query 3332 CCCGGAGGTATATTGGTGGTTCCAATACATTGTTGGAAATTACACAGAAAACCAGTTTGC 3391
|||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct 3134 CCCGGAAGTATATTGGTGGTTCCAATATATTGTTGGAGATTACACAGAAAACCATTTTGC 3193
Query 3392 TCCTACACAATCTGCTAGATGTGGCTGAGGAATTTCATTTAGCTCAAATGAATATACCAA 3451
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3194 GCTTACACAATCTGCTAGATGTGGCTGAGGAATTTCATTTAGCTCAAATGAATATACCAA 3253
Query 3452 ATTTGGTCCAAGGAAACTTTGATTCTCCATCAGCGGAGCAGCTACATTTGCAGATTAGCT 3511
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 3254 ATTTGGTCCAAGGAAACTTTGATTCTCCATCAGCGGAGCTGCTACATTTGCAGATTAACT 3313
Query 3512 TTCTTGATTGCACAAACTTGAGAAAACTAAGCGTGATTCTCGATGTGACATGTTTGATCC 3571
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3314 TTCTTGATTGCACAAACTTGAGAAAACTAAGCGTGATTCTCGATGTGACATCTTTGATCC 3373
Query 3572 ATGGGAAATATCCTAGTGATGTAGTTCCTTGCGAGTTCCGTA-AAGTTTCAGGCACAAAA 3630
||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct 3374 ATGGGAAGTATCCTAGTGATGTAGTTCCTTGCGAGTTACG-AGAAGTTTCAGGCACAAAA 3432
Query 3631 AGAGACGGTGTTGTGTCGAA-ACAACTGAAGAAGGAGATAGAATCTACAATTGA-TGATG 3688
||||||||||||| ||| || |||||||||||| |||||||| ||| |||| || |||||
Sbjct 3433 AGAGACGGTGTTGCGTC-AATACAACTGAAGAACGAGATAGACTCTGCAAT-GAATGATG 3490
Query 3689 TTGGAGTGGGATATCCTCGGATATTGAGACTCTGTCGTTGCATTTCCAAAGCGTTGCAAT 3748
||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||
Sbjct 3491 TTGGAGTGGGATATCCTCGAATACTGAGACTCTGTCTTTGCATTTCCAAAGCATTGCAAT 3550
Query 3749 CAGAAAAGAGATGATGTCTCATTTCGTAACACTCTTTAACATTTTTTACTGGTTTGGTTT 3808
|| |||||||||||| ||||||| |||||||| || |||||||| || ||||||||||
Sbjct 3551 CACAAAAGAGATGATAACTCATTTTGTAACACT-TT-AACATTTT--ACGGGTTTGGTTT 3606
Query 3809 TGTAAATATGGCACAAGGGCTACTACTAC-AGTAGTACCTTTTGCCATTTTTAATCTTTT 3867
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3607 TGTAAATATGGCGGAAGGGCTACTACTACTAGTAGTACCTTTTGCCATTTTTAATCTTTT 3666
Query 3868 AACCAACAGGTTTAGTTTTTGGGTTTTGTATATGTTGGTGAATACGTTAACCAGTCTTCC 3927
|||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3667 AACCAAAAGTTTTAGTTTT-GGGTTTTGTATATGTTGGTGAATACGTTAACCAGTCTTCC 3725
Query 3928 TCGTCTT-GGCTCTTAGTGCAAGA 3950
|||| || || |||||||| ||||
Sbjct 3726 TCGT-TTCGGGTCTTAGTGTAAGA 3748
Score = 664 bits (359), Expect = 0.0
Identities = 420/450 (93%), Gaps = 2/450 (0%)
Strand=Plus/Plus
Query 513 ATTGTTGGATACTCCTATCTCTGAAGAACACCATGAAATGACGATGGATTCTACGGCGTT 572
||||| ||||||| || |||||||||| |||||||||||||||||||||||||| |||||
Sbjct 405 ATTGTCGGATACTACTTTCTCTGAAGAGCACCATGAAATGACGATGGATTCTACTGCGTT 464
Query 573 TTCGATGCATTTTCGGAGTCTTGCTAGGTCAGAGTCTGGAGATGTAAGGACCCCTACGAG 632
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 465 TTCGATGCATTTTCGGAGTCTTGCTAGGTCAGAGTCTGGAGATGTAAGGACTCCAACAAG 524
Query 633 TAGCCATCTTCTAGTAGAAGAGAAAACACCAACTGAGGTTACTTCCAGATCTGATACAGG 692
|||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 525 CAGCCATCTTCCAGTAGAAGAAAAAACACCAACTGAGGTTACCTCTAGATCTGATACAGG 584
Query 693 AAGTGCAATGGTGTTAACAGAACCTAAGAAGCTATTTCCAAAATCACCTGTACCAGTTGA 752
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 585 AAGTGCAATGGTGTTAACAGAACCTAAGAAGCTATTTCCAAAATCCCCTGTGCCAGTTGA 644
Query 753 TAAAGGAAGTGGTGGTAGAGACTCGAATGATATGAGTATCGTCGGTGAAAATTCTCGGAG 812
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 645 TAAAGGAAGTGGTGGTAGAGACTCGAATGATATGAGTATTGTGGGTGAAAATTCTCGGAA 704
Query 813 ATATGATTACGGGTATCTATCTCCTACACTAGCAGCTCTAATGGGAGATGAAAGCAAGGA 872
|||||||||||| ||| |||||||||||||||||||| |||||||||||| |||||||||
Sbjct 705 ATATGATTACGGTTATATATCTCCTACACTAGCAGCTTTAATGGGAGATGGAAGCAAGGA 764
Query 873 ATTGCTTCCTGAAGACAATACTGTGGAAGCAAGATCACCTATCGATGATTTTTCCTCGTC 932
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 765 ATTGCTTCCTGAAGATAATACTGTGGAAGCAAGATCACCTATCGATGATTTTTTTTCGTC 824
Query 933 -CCTTCCAAATGGATGCATTCCCATAGGTC 961
||| | |||||||| ||| ||||||||||
Sbjct 825 TCCT-CAAAATGGATACATGCCCATAGGTC 853
Score = 532 bits (288), Expect = 6e-150
Identities = 347/374 (93%), Gaps = 9/374 (2%)
Strand=Plus/Plus
Query 1 ATGGCATCGGAAAAGCCAGAAGATCCGATGAACAACACCGCCGGAATAGGAACAGACGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCATCGGAAAAGCCAGAAGATCCGATGAACAACACCGCCGGAATAGGAACAGACGAG 60
Query 61 GAATCTATAGCGCAACGGCGGAAGCGGCTAAGACGAGTGAGCTTCGCCGACCGGGAAATT 120
|| |||||||| || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 GAGTCTATAGCTCAGCGTCGGAAGCGGCTCCGACGAGTGAGCTTCGCCGACCGGGAAATT 120
Query 121 ACTTCCGTTCACATTTTCAACCGGGACGAAGATTACGAGACGCCGCCCAATACCTCCGCC 180
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 121 ACTTCCGTTCACATTTTCAACCGGGACGAAGATTACGAGACGCCGCCAAACACCTCCGCC 180
Query 181 GCGAAACCCCAAAACGGTGGTGATACATCAGAGCCTGATGAGGATAATAAAGTAATTAGG 240
|||||||| |||||| ||||||||| ||||| | |||| | ||||||||||||||
Sbjct 181 GCGAAACCACAAAAC---GGTGATACAGCAGAG-C--ATGA--A-GATAAAGTAATTAGG 231
Query 241 TTTTTCGGTGAATTATCTGACCGCGAAGATACTGACGGAGATGGTGATGGTGAATACGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TTTTTCGGTGAATTATCTGACCGCGAAGATACTGACGGAGATGGTGATGGTGAATACGAA 291
Query 301 CCTATCTTGGATAAATCATTCTTGAGGCCGAAATATTCTCCATCTTCAGGAGGTAGCACT 360
|||| |||||||||||||||||||| || |||||||| ||||||||||||||||| |||
Sbjct 292 GCTATATTGGATAAATCATTCTTGAGACCAAAATATTCACCATCTTCAGGAGGTAGTACT 351
Query 361 GTTGGTTCCGCTAC 374
|||||||| |||||
Sbjct 352 GTTGGTTCTGCTAC 365
Score = 331 bits (179), Expect = 2e-89
Identities = 256/293 (87%), Gaps = 5/293 (2%)
Strand=Plus/Plus
Query 1436 ATGATAATAGAACACCAGTTCCAGAAGAGAAAGGCATACCAGATCAA-TGTATTAGTGGT 1494
||||||||||||||||| || | ||| ||||| |||| |||||| || ||| ||||||||
Sbjct 1283 ATGATAATAGAACACCAATTTCTGAAAAGAAAAGCATCCCAGAT-AAGTGTGTTAGTGGT 1341
Query 1495 GCATTGAGCCATGCTGTTGACACTAGCGATGATAATAAAACACCAGTTCCAGAAGAGAAA 1554
||||| | || ||||||||| |||| ||||||||||| ||||| |||| ||||| |||||
Sbjct 1342 GCATTCAACCCTGCTGTTGAAACTATCGATGATAATAGAACACAAGTTTCAGAAAAGAAA 1401
Query 1555 GGCATACCAGATCAATGCAGTAGTGGTGCATTGAACCCTGCCGTTGACACTAGCGATGAT 1614
||||| ||||||| ||||| |||||||||||||| |||||| ||||||||||||| | |
Sbjct 1402 GGCATCCCAGATCGATGCACTAGTGGTGCATTGAGCCCTGCTGTTGACACTAGCG-T--T 1458
Query 1615 AATAGAACACCAGTTCAAGAAAAGAAAGGCTTGCCAGATCAATGCAGTAGTGGTGCATTG 1674
|||||||||||||| ||||||||||||| | ||||||| ||||| |||||||||||||
Sbjct 1459 GATAGAACACCAGTTTTAGAAAAGAAAGGCATCCCAGATCGATGCACTAGTGGTGCATTG 1518
Query 1675 AGCCCTGCTGTTGACACTAGCGATGACAGGCCACCAGTTTCTGAAAAGAAAGG 1727
|||||||||||||||||||||||||| || |||||||||| |||||||||||
Sbjct 1519 AGCCCTGCTGTTGACACTAGCGATGATAGAACACCAGTTTCAGAAAAGAAAGG 1571
Score = 267 bits (144), Expect = 6e-70
Identities = 226/265 (85%), Gaps = 8/265 (3%)
Strand=Plus/Plus
Query 1523 ATGATAATAAAACACCAGTTCCAGAAGAGAAAGGCATACCAGATCAA-TGCAG-TAGTGG 1580
||||||||| ||||||| || | ||| ||||| |||| |||||| || || | ||||||
Sbjct 1283 ATGATAATAGAACACCAATTTCTGAAAAGAAAAGCATCCCAGAT-AAGTG-TGTTAGTGG 1340
Query 1581 TGCATTGAACCCTGCCGTTGACACTAGCGATGATAATAGAACACCAG-TTCAAGAAAAGA 1639
|||||| |||||||| ||||| |||| ||||||||||||||||| || ||| ||||||||
Sbjct 1341 TGCATTCAACCCTGCTGTTGAAACTATCGATGATAATAGAACACAAGTTTC-AGAAAAGA 1399
Query 1640 AAGGCTTGCCAGATCAATGCAGTAGTGGTGCATTGAGCCCTGCTGTTGACACTAGCGATG 1699
||||| | ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1400 AAGGCATCCCAGATCGATGCACTAGTGGTGCATTGAGCCCTGCTGTTGACACTAGCGTTG 1459
Query 1700 ACAGGCCACCAGTTTCT-GAAAAGAAAGGCATACCAGATCAACACAGTTGCGGTGCATTG 1758
| || ||||||||| | |||||||||||||| ||||||| | || | | |||||||||
Sbjct 1460 ATAGAACACCAGTTT-TAGAAAAGAAAGGCATCCCAGATCGATGCACTAGTGGTGCATTG 1518
Query 1759 ATTCCTGCTGTTGACATTAGCGATG 1783
| ||||||||||||| ||||||||
Sbjct 1519 AGCCCTGCTGTTGACACTAGCGATG 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150479643642
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5