BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04240.1
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480074 jgi|Araly1|480074|fgenesh2_kg.3__2775__AT2G04240.2 1083 0.0
> Ahg480074 jgi|Araly1|480074|fgenesh2_kg.3__2775__AT2G04240.2
Length=1229
Score = 1083 bits (586), Expect = 0.0
Identities = 680/725 (94%), Gaps = 8/725 (1%)
Strand=Plus/Plus
Query 121 AGAC-AACATCATTTCTACCGACAAAGATTTGATATCGAATCCAACAAGTGAAAGATGGG 179
|||| ||||||||||||||||||||||||| |||||| ||||||| || |||||||||||
Sbjct 510 AGACAAACATCATTTCTACCGACAAAGATTGGATATCCAATCCAAGAATTGAAAGATGGG 569
Query 180 TCTATCAAGTCTTCCTGGTCCATCAGAAGGAATGTTATGTGTGATATTAGTTAATACAGC 239
| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 570 TTTATCAAGTCTTCCTGGTCCATCAGAAGGAATGTTATGTGTGATATTAGTAAACACAGC 629
Query 240 ATTATCGATCTCCATTGTCAAAGGCATTGTAAGATCATTCCTTGGCATAGTAGGAATCAG 299
|||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 630 ATTATCGATCTCCATTGTTAAAGGCATTGTCCGATCAGTCCTTGGCATAGTAGGAATCAG 689
Query 300 TCTCTCGCCGTCTTCATCCTCGCCTTCTTCGGTGACGGTATCTTCAGAGAATTCATCAAC 359
||||||||||||||||||||||||||| || |||||||||||||||||||| || ||||
Sbjct 690 TCTCTCGCCGTCTTCATCCTCGCCTTCCTCAGTGACGGTATCTTCAGAGAA-TC--CAAC 746
Query 360 TTCAGAGTCATTTGATTTCCGGGTCTGCCAACCAGAGAGTTACCTTGAGGAGTTCAGGAA 419
||||||| | |||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 747 TTCAGAGCCTTTTGATTTCCGGGTTTGCCAACCAGAGAGTTTCCTTGAGGAGTTCAGGAA 806
Query 420 CCGGACTCCGACACTGAGGTTTGAGAGCTTGTGCAGGTGCAAGAAACAGGCA-GACAATG 478
||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 807 CCGGACTCCAACACTGAGGTTTGAGAGCTTGTGCAGGTGCAAGAAACAGG-AGGACAACG 865
Query 479 AGTGTTCTGTGTGTTTGTCGAAATTCCAAGGGGATTCAGAGATCAACAAGCTCAAGTGCG 538
||||||| |||||| ||||||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 866 AGTGTTCGGTGTGTCTGTCGAAATTCGAAGGGGATTCAGAGATCAACAAGCTAAAGTGTG 925
Query 539 GCCATTTGTTTCACAAAACATGCTTGGAGAAATGGATAGACTATTGGAACATCACTTGCC 598
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 926 GCCATTTGTTTCACAAAACATGCTTGGAGAAATGGATAGACTATTGGAACATTACTTGCC 985
Query 599 CATTGTGTAGGACTCCTCTTGTTGTTGTGCCAGAAGACCATCAGCTTTCTTCTAATGTTT 658
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 986 CACTGTGTAGGACTCCTCTTGTTGTTGTGGCAGAAGACCATCAGCTTTCTTCTAATGTTT 1045
Query 659 GGTGACTGCTTTTCACTGTATAGGTTTTTTGTTTGAGTGTGTTTGTTGTGTACAGCTACT 718
||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||
Sbjct 1046 GGTGACTACTTTTCACTGTATAGGGTTTTTGTTTGGGTGTGTTTGTTGTGTAGAGCTACT 1105
Query 719 TTTACTATGAATTAGGTTGCATCGCGGTTGATTCTCGAGCAGATTTAAACCGGGGATGGG 778
|| ||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 1106 TT-ACTATGAATTAGGCTGCATCGCGGTTGATTCTCAAACAGATTTAGACCGGGGATGGG 1164
Query 779 ATAATCTGATGTACatatatatatataCCCATGTGTA-TGGAGCTCTTGTTTGAACACAG 837
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 1165 ATAATCTGATGTACATATATATATATACCCATGTGTAATGGAGCTCGTGTTTGAACATAG 1224
Query 838 TTTTC 842
|||||
Sbjct 1225 TTTTC 1229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5