BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04280.1
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930748 jgi|Araly1|930748|scaffold_303205.1 2643 0.0
Ahg359123 jgi|Araly1|359123|fgenesh1_pg.C_scaffold_9000163 1291 0.0
> Ahg930748 jgi|Araly1|930748|scaffold_303205.1
Length=1747
Score = 2643 bits (1431), Expect = 0.0
Identities = 1640/1740 (94%), Gaps = 17/1740 (1%)
Strand=Plus/Plus
Query 102 AGAAAATGTTTGGCCGATCTGCGATTCGTGGAGGAGGATTCCGTGCAGAGAATCTAGGTC 161
||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||| |
Sbjct 18 AGAAAATGTTTGGCCGATCTGCGATTCGT---GGAGGTTTCCGTCCTGAGAATCTAGGGC 74
Query 162 AAAACGCACTTACCTTAATCGGTAACATAGGCTTCTCACTCTTCGTCTTCGGAGTACTAA 221
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AAAACGCACTTACCTTAATAGGTAACATAGGCTTCTCACTCTTCGTCTTCGGAGTACTAA 134
Query 222 TCTTCACCATAATCGCCGCAACTTACGAACCAGAAGATCCTCTCTTCCACCCATCTGACA 281
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TCTTCACCATTATCGCCGCAACTTACGAACCAGAAGATCCTCTCTTCCACCCATCTGACA 194
Query 282 AAATCACAACTTTCCTCACTTCCACATCAAACGCTACACTTAGATCCGATGACTCCGTTG 341
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 195 AAATCACAACTTTCCTCACTTCCACATCAAACGCTACACTGAGATCCGATGACTCCGTTG 254
Query 342 TTAAAACCGGTGAAGATTTCATGCTCGCTAACCAAACCGCATTTGCAGAGTTTATCAACA 401
||||||||||||||||||||||| | || || |||||||||||||| |||||||||||||
Sbjct 255 TTAAAACCGGTGAAGATTTCATGGTAGCGAATCAAACCGCATTTGCGGAGTTTATCAACA 314
Query 402 TAAAC-GATGTTGAAG---CCAGCACCAATGAGACTACTACAGAGGAAGAGGGTAA-CAA 456
| ||| |||||||||| ||| ||||||||||||||| |||||| ||||| ||| | |
Sbjct 315 T-AACTGATGTTGAAGCAACCAATACCAATGAGACTACTTCAGAGGGAGAGGCTAATC-A 372
Query 457 GTTGGAATGTGATGTGAATACTCCAATTGATTGCAAAGATC-AGCAAGTGTTTCATCTTA 515
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 373 GTTGGAATGTGATGTGAATACTCCAATTGATTGCAAAGATCAAG-AAGTGTTTCATCTTA 431
Query 516 TGATGAGAGCTACTATTGACAAGTTTAAAGATATTCACTTTTATAAGTTTGGTAAGCCTG 575
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TGATGAGAGCTACTATTGAGAAGTTTAAAGATATTCACTTTTATAAGTTTGGTAAGCCTG 491
Query 576 TTACTGGCGAAGAAGGTGTGAATTCTTGTGATATGGCGTGGCGTTATAGGCCTAGAGATG 635
| | | | |||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 492 -TGGTTG-G-TGAAGGTGTGAATTCTTGTGATATGGCGTGGCGGTATAGGCCTAAAGATG 548
Query 636 GGAAGAGTGCTGCTTTTTATAAGGATTATAGGAGGTTTGTTGTTGCTAAGTCTGAGAATT 695
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 549 GGAAGAGTGCTGCTTTTTATAAGGATTATAGGAGGTTTGTTGTTGGTAAGTCTGAGAATT 608
Query 696 GTAGTGTGAGTGTTGTTGGGATTGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGAGGA 755
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 609 GTAGTGTGAGTGTTGTGGGGATTGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGCGGA 668
Query 756 AGAAGAATCAGAAAGCTGGGTTTGAGAAAACTGGTGGGAAGAAAGATGATTTCTCTTTGC 815
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 669 AGAAGAATCAGAAAGCTGGGTTTGAGAAAACTGGTGAGAAGAAAGATGATTTCTCTTTGC 728
Query 816 CTGTTGTTGGTGAACTTGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTTA 875
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CTGTTGTTGGTGAACTAGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTTA 788
Query 876 AGACTGGCAAGTATTTGGTTTATGTTGGTGGTGGAGATAGGTGTAAGAGTATGAATCATT 935
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 789 AGAGTGGCAAGTATTTGGTTTATGTTGGTGGAGGAGATAGGTGTAAGAGTATGAATCATT 848
Query 936 TTCTGTGGAGTTTCTTGTGTGCTCTTGGGGAAGCTCAGTATTTGAATAGGACTCTAGTGA 995
||||||||||||| |||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 849 TTCTGTGGAGTTTTTTGTGTGCACTTGGGGAAGCTCAGTATTTGAATAGGACTTTGGTGA 908
Query 996 TGGATTTGACCTTGTGTTTGTCTTCTATCTATACTTCGTCTGGTCAGAATGAGGAAGGCA 1055
|||||||||| |||||||||||||||||||| || |||||||||||||| |||||||| |
Sbjct 909 TGGATTTGACGTTGTGTTTGTCTTCTATCTACACGTCGTCTGGTCAGAACGAGGAAGGGA 968
Query 1056 AGGA-TTTCAGGTTTTACTTTGATTTCGAGCATTTGAAAGAAGCTGCTTCTGTGTTGGAT 1114
|||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 969 AGGACTTTC-GGTTTTACTTTGATTTCGAGCATTTGAAGGAAGCTGCTTCTGTGTTGGAT 1027
Query 1115 GAAGCTCAGTTTTGGGCTCAGTGGGGGAAATTGCGTAAGAAGAGAAGAAATAGATTGAAC 1174
|||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1028 GAAGTTCAGTTTTGGGCTAAGTGGGGGAAATTGCATAAGAAGAGAAGAAATAGATTGAAT 1087
Query 1175 CTTCATCTCGTGGAGGATTTTAGGGTCACTCCCATGAAGCTCGCGGCTGTCAAAGATACG 1234
|||||||||||||||||||||||||||| || |||||||| |||| ||| |||||||||
Sbjct 1088 ATTCATCTCGTGGAGGATTTTAGGGTCACGCCGATGAAGCTTGCGGATGTAAAAGATACG 1147
Query 1235 TTGATAATGAGGAAGTTTGGATCTGTAGAACCAGACAATTATTGGTACAGGGTTTGTGAA 1294
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1148 TTGATAATGAGGAAGTTTGGGTCGGTAGAACCAGACAATTATTGGTACAGAGTTTGTGAA 1207
Query 1295 GGAGATGCAGAATCTGTTGTTAAACGACCGTGGCATCTGTTATGGAAATCAAGAAGGTTG 1354
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1208 GGAGATGCAGAATCTGTTGTTAAAAGGCCGTGGCATCTGTTATGGAAATCAAGAAGGTTG 1267
Query 1355 ATGGAAATCGTCTCTGCTATTGCATCAAGGTTAAACTGGGACTACGATGCTGTACACATT 1414
|||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1268 ATGGAAATTGTCTCTGCGATTGCATCAAGGTTAAACTGGGATTACGATGCAGTACACATT 1327
Query 1415 GAGAGAGGAGAGAAAGCAAGAAACAAGGAGGTTTGGCCTAATCTTGAAGCGGATACTTCC 1474
||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 1328 GAGAGAGGAGATAAAGCAAGAAACAAGGAGCTGTGGCCTAATCTTGAAACGGATACTTCC 1387
Query 1475 CCGAGCGCTCTCTTGTCGACCTTGCAGGACAAAGTTGAAGAAGGAAGGCATCTCTACATC 1534
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1388 CCGAGCGCTCTTTTGTCGACCTTGCAGGACAAAGTAGAAGAAGGAAGGCATCTCTACATC 1447
Query 1535 GCAACAAATGAAGGAGAATTATCCTTCTTCAACCCTTTGAAAGATAAGTACGCCACTCAT 1594
||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1448 GCAACAAATGAAGAAGAGTTATCCTTCTTCAACCCTTTGAAAGACAAGTATGCCACTCAT 1507
Query 1595 TTCCTTTACGACTACAAAGATCTTTGGGATGAGAGCAGTGAGTGGTATTCAGAGACTACT 1654
|| |||||||||||||||||||| ||||| |||| || ||||||||||||||||||||
Sbjct 1508 TTTCTTTACGACTACAAAGATCTGTGGGACGAGAATAGCGAGTGGTATTCAGAGACTACA 1567
Query 1655 AAGCTTAATGGAGGCAACCCGGTCGAATTTGATGGTTACATGAGAGCATCTGTTGACACA 1714
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1568 AAGCTTAATGGAGGCAACCCGGTCGAGTTTGATGGTTACATGAGAGCATCTGTTGACACA 1627
Query 1715 GAAGTATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATTGT 1774
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 GAAGTATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATTGC 1687
Query 1775 AAAGATGGAGTTGGGACCTGCAATGCTGCAACTTCCTGATCTCTGTCATATTCCTCATTT 1834
||||||||||||||||||||||||||||||||||| |||||||| | | |||||||||||
Sbjct 1688 AAAGATGGAGTTGGGACCTGCAATGCTGCAACTTCTTGATCTCTCTTAGATTCCTCATTT 1747
> Ahg359123 jgi|Araly1|359123|fgenesh1_pg.C_scaffold_9000163
Length=1674
Score = 1291 bits (699), Expect = 0.0
Identities = 1388/1705 (81%), Gaps = 109/1705 (6%)
Strand=Plus/Plus
Query 134 GGAGGATTCCGTGCAGAGAATCTAGGTCAAAACGCACTTACCTTAATCGGTAA-CATAGG 192
||||| ||||| ||||||||||||| ||||||||| | | ||||||||| || ||||||
Sbjct 22 GGAGGTTTCCGACCAGAGAATCTAGGGCAAAACGCAGTAAGCTTAATCGG-AAGCATAGG 80
Query 193 CTTCTC-ACTCTTCGTCTTCGGAGTAC-TAATCTTCACCATAATCGCCGCAACTTACGAA 250
|||||| | | ||||| ||||||| | || | |||||||| | ||| || || || |||
Sbjct 81 CTTCTCTA-TATTCGTAATCGGAGT-CGTAGTTTTCACCATTACCGCTGCTACATATGAA 138
Query 251 CCAGAAGATCCTCTCTTCCACCCATCTGACAAAATCACAACTTTCCTCACTTCCACA-TC 309
||||||||||| || || |||||||||||||||||||||||||||||| | |||| | ||
Sbjct 139 CCAGAAGATCCACTTTTTCACCCATCTGACAAAATCACAACTTTCCTCTCATCCA-ATTC 197
Query 310 AAACGCTACACTTAGATCCGATGACTCCGTTGTTAAAACCGGTGAAGATTTCAT-GCTCG 368
||||||||| |||| |||||| ||| |||||||||||||||||||||||||| || |
Sbjct 198 AAACGCTACTCTTAAATCCGACGACAGTGTTGTTAAAACCGGTGAAGATTTCATGGC-GG 256
Query 369 CTAACCAAACCGCATTTGC-AGAGTTTATCAACATAAAC-GATGTTGAAGCCAGCACCAA 426
| ||||||||||| || || || || |||||||| | | ||||| ||| | || |
Sbjct 257 CGAACCAAACCGCGTTCGCTGGA-TTCATCAACAT-AGCTGATGTGGAA---A-CATC-- 308
Query 427 TGAGACTACTACAGAGGAAGAGGGTAA-CAAGTTGGAATGTGATGT-GAATACT-CCAAT 483
||||| | | || || | ||| ||| ||||| |||||| | ||| | |||||
Sbjct 309 TGAGA--A-T---GATTCTGATGCTAATCAA-TTGGATTGTGAT-TCCAAT-GTCCCAAT 359
Query 484 TGATTGCAAAGAT-CAGCAAGTGTTTCATCTT-ATGATGAGAGCTACTATTGACAAGTTT 541
|||||||||||| | | |||| ||||| ||| ||||||| ||||||||| || ||||||
Sbjct 360 CGATTGCAAAGATCCTG-AAGTTTTTCA-CTTGATGATGAAAGCTACTATGGAGAAGTTT 417
Query 542 AAAGATATTCACTTTTATAAGTTTGGTAAGCCTGTTACTGGCGAAGAAGGT-GTGAATTC 600
||||| ||||||||||||||||||||||| ||||| ||| | | |||||| | | |||
Sbjct 418 AAAGACATTCACTTTTATAAGTTTGGTAAACCTGTGACT-GTG--GAAGGTACT-AGTTC 473
Query 601 TTGTGATATGGCGTGGCGTTATAGGCCT-AGAGATGGGAAGA-GTGCTGCTTTTTATAAG 658
|||||||||||| ||||||||||| ||| || ||||| || | | ||| | |||||||||
Sbjct 474 TTGTGATATGGCTTGGCGTTATAGACCTAAG-GATGGTAAAACG-GCTACGTTTTATAAG 531
Query 659 GATTATAGGAGGTTTGTTG-TTGCTAAGTCTGAGAATTGTAGTGTGAGTGTTGTTGGG-A 716
|||||||||||||||| || |||| |||||||||||||||||||| |||| || |||| |
Sbjct 532 GATTATAGGAGGTTTG-TGATTGCAAAGTCTGAGAATTGTAGTGTTAGTG-TGATGGGTA 589
Query 717 TTGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGAGGAAGAAGAATCAGAAAGCTGGGT 776
|||||||||||||||||||| |||||||||||||| ||||| || | | ||||
Sbjct 590 TTGGTGAGTATCATTCGGGTGTGAATGCGAGGAAGCGGAAG-AG-----G---CCCGGGT 640
Query 777 TT-GAGAA---AACTGGTGGGAAGAAAGATGATTTCTCTTTGCCTGTTGTTGGTGAA-CT 831
|| | ||| | |||||| ||| ||||||||||| |||||||| ||||||||| |
Sbjct 641 TTCG-GAATTCGAGTGGTGGTAAGGTTGATGATTTCTCATTGCCTGTGGTTGGTGAAGC- 698
Query 832 TGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTT-AAGACTGG-CAAGTAT 889
||||||||||| |||||| ||||||||||||| | || |||| |||| || | | ||
Sbjct 699 AGTGAATGATTCACTTCCTGTGGTTGAGTCTGAGAATGCGTTTAAAGA-AGGTC-ATTAC 756
Query 890 TTGGTTTATGT-TGGTGGTGGAGATAGGTGTAAGAGTATGAATCATTTTC-TGTGGAGTT 947
||||||||| | ||||| ||||||||||||||||||||||| || |||| |||||||||
Sbjct 757 TTGGTTTAT-TCGGGTGGAGGAGATAGGTGTAAGAGTATGAACCA-TTTCTTGTGGAGTT 814
Query 948 TCTTGTGTGCTCTT-GGGGAAGCTCAGTATTTGAATAGGACTCTAGTGATGGATTTGA-C 1005
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 815 TCTTGTGTGCT-TTGGGGGAAGCTCAGTATTTGAATAGGACTTTAGTGATGGATTTGAGT 873
Query 1006 CTTGTGTTTGTCTTCTATCTATAC-TTCGTCTGGTCAGAATGAGGAAGGCAAGGA-TTTC 1063
||| |||||||||||| | ||||| || ||||||||| || |||||||| ||||| |||
Sbjct 874 CTT-TGTTTGTCTTCTGTTTATACGTT-GTCTGGTCAAAACGAGGAAGGAAAGGACTTT- 930
Query 1064 AGGTTTTACTTTGATTTCGAGCATTTGAAAGAAGCTGCTTCTGTGTTGGATGAAGCT-CA 1122
|||||||||||||||||||||||||||||||| |||||||||||| | || || | ||
Sbjct 931 AGGTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGCTTCTGTGATAGA-CCAGGTGCA 989
Query 1123 GTTTTGGGCTCAG-TGGGGGAAATTGCGTAAGAAGAGAAGAAATAGATTGAACCTTCATC 1181
|||||||| ||| | ||||||| || || | | ||||| ||| |||| || |||||||
Sbjct 990 GTTTTGGG--CAGATTGGGGAAAATG-GT-A-TA-AGAAG-AATGGATTAAAGCTTCATC 1042
Query 1182 TCGTGGAGGATTTTAGGGTCACTCCCATGAAGCTCGCGGCTGTCAAAGATACGTTGATAA 1241
| ||||| || ||||||||||| || |||||||| | | ||| || || ||||||||||
Sbjct 1043 TTGTGGAAGACTTTAGGGTCACACCGATGAAGCTTGTTGATGTTAAGGACACGTTGATAA 1102
Query 1242 TGAGGAAGTT-TGGATCTGTAGAACCAGACAATTATTGGTACAGGGTTTGTGAAGGAGAT 1300
|||||||||| ||| | ||||||||||| || ||||||||||| ||||||||||| ||
Sbjct 1103 TGAGGAAGTTCGGGA-CAGTAGAACCAGATAACTATTGGTACAGAGTTTGTGAAGGGGA- 1160
Query 1301 G-CAGAATCTGTTGT-TAAACGACCGTGGCATCTGTTATGGAAATCAAGAAGGTTGATGG 1358
| ||||||||||||| ||| | || ||||||||||| |||||||| ||| || ||||||
Sbjct 1161 GACAGAATCTGTTGTGCAAAAG-CCTTGGCATCTGTTGTGGAAATCTAGACGGCTGATGG 1219
Query 1359 AAATCGTCTCTGCTATTGCATCAAGGTTAAACTGGGACTACGATGCTGTACACATTGAGA 1418
| || || ||||| ||||| || |||||||||||||| || |||||| | ||||||||||
Sbjct 1220 AGATTGTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTATTCACATTGAGA 1279
Query 1419 GAGGAGAGAAAGCAAGAAACAAGGAGGTTTGGCCTAATCTTGAAGCGGATACTTCCCCGA 1478
||||||| || || ||||||||||| |||||||||||||| ||| ||||||||| || |
Sbjct 1280 GAGGAGATAAGGCGAGAAACAAGGAAGTTTGGCCTAATCTGGAAAAGGATACTTCACCAA 1339
Query 1479 GCGCTC-TCTTGTCGACCTTGCAGGACAAAGTTGAAG-AAGGAAGGCATCTCTACATCGC 1536
|| | | | || || ||| || |||||||| | | || |||| ||| |||| || || ||
Sbjct 1340 GCTC-CATTTTATCTACCCTGAAGGACAAAATCG-AGCAAGGGAGGAATCTTTATATTGC 1397
Query 1537 AACAAATGAAGGAGAAT-TATCCTT-CTTCAACCCTTTGAAAGATAAGTACGCCACTCAT 1594
|||||||||| || || || | || ||| |||||| ||||||| |||||| || |||
Sbjct 1398 AACAAATGAACCAG-ATGTAACTTTCCTT-AACCCTATGAAAGACAAGTACAAAACCCAT 1455
Query 1595 -TTCCTTTACGACTACAAAGATCTTTGGGATGAGAGCAGTGAGTGGTATTCAGAGACTAC 1653
|| || | || | || ||||| ||||| |||||||| || |||||||||||||| |
Sbjct 1456 CTT-CTGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCAGAGACCA- 1513
Query 1654 T-AAGCTTAATGGAGGCAACCCGGTCGAATTTGATGGTTACATGAGAGCATCTGTTGACA 1712
| |||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||| |
Sbjct 1514 TGAAGCTTAATGGAGGAAACCCAGTCGATTTTGACGGTTACATGAGAGCGTCTGTTGATA 1573
Query 1713 CAGAAGTATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATT 1772
| ||||| ||||||||||||||||||||||||||||||||||| |||||||| || || |
Sbjct 1574 CGGAAGTGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACCAATGACT 1633
Query 1773 GTAAAGATGGAGTTGGGACCTGCAA 1797
||| ||| ||| | || || |||||
Sbjct 1634 GTAGAGACGGAATCGGCACTTGCAA 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76028129020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5