BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04300.1
Length=2658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930749 jgi|Araly1|930749|scaffold_303206.1 538 8e-152
Ahg914333 jgi|Araly1|914333|Al_scaffold_0001_4587 366 4e-100
> Ahg930749 jgi|Araly1|930749|scaffold_303206.1
Length=1027
Score = 538 bits (291), Expect = 8e-152
Identities = 361/396 (91%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 537 AGAGCTGCGACCACTTATAAACGATACTTACAATACTCAAAGTGGCTCGCTGAAATACTT 596
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 111 AGAGCTGCGACCACTTATAAACGATACCTACAATACGCAAAGCGGCTCGCTGAAATATTT 170
Query 597 ATTTCGGAATTATTTCAGCACTTCAAGGAGAATAATACGGTACCCGAATGATGTCAACGA 656
||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||| ||
Sbjct 171 ATTTCGGAATTATTTCAGCTCTTCAAGGAGACTAATAAGGTACCCGGATGATGTCAATGA 230
Query 657 TCGTCATTGGTATCCGTTCTTTGATGAGGATGCGTGGACAGAATTGACTACAAATCTCAA 716
|||||||||| |||| | ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 231 TCGTCATTGGAATCCATACTTCGATGAGGATGTGTGGACAGAATTGACTACAAATCTCAA 290
Query 717 TGTTAACAGTTCAAATGGTTATGATCCACCAAAATTTGTAATGGCTTCAGCCTCAACACC 776
|||||||||||| |||||||||||||||||||||| | |||||||||| ||| |||||||
Sbjct 291 TGTTAACAGTTCTAATGGTTATGATCCACCAAAATCTATAATGGCTTCGGCCGCAACACC 350
Query 777 CATAAGTAAAAATGCGCCCTTCAACTTCACCTGGTCATTGATTCCTTCTACGGCCAAATT 836
||||||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 351 CATAAGTAACAATGCGCCCTTCAACTTCACCTGGTCATTGATCCCCTCTACGGCCGAATT 410
Query 837 TTATAGTTACATGCACTTCGCCGATATTCAGACTCTACAGGCCAATGAAACCCGAGAATT 896
|||||| ||||||||||| || ||||||||||| |||| ||||||||| |||||||||||
Sbjct 411 TTATAGCTACATGCACTTTGCTGATATTCAGACACTACGGGCCAATGATACCCGAGAATT 470
Query 897 CGACATGATGTTGAATGGAAACCTTGCCTTGGAACG 932
| || | || |||||||| ||| |||||||||||||
Sbjct 471 CAACTTTATATTGAATGGGAACGTTGCCTTGGAACG 506
Score = 276 bits (149), Expect = 7e-73
Identities = 174/186 (94%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 1353 TCTTGAAGGAAATATTTATCTTAATTGTCCGGATGGATCATGTGTA-AGCAAAGACGGAA 1411
||||||||||||||| |||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 765 TCTTGAAGGAAATATATATCTTAATTGTCCGGGTGGATCATGTGTACA-CAAAGACGGAA 823
Query 1412 ATGGAGGTGCCAAGAAAAAGAATGTTGTAGTATTGGTTGTGGTATCAATTGCACTTGTAG 1471
|||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |
Sbjct 824 ATGGAGGTGCCAAGAAAAAGAATGTTCTAGTGTTGGTTGTGGTATCAATTGCAGTTGTGG 883
Query 1472 TAGTTCTTGGATCTGCATTAGCTCtttttttGGTGTTTAGAAAAAGAAAAACACCACGCA 1531
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 884 TAGTTCTTGGAACTGCATTAGCTCTTTTTTTGGTGTTTAGAAAAAGAAAAACACCGCACA 943
Query 1532 ATGAAG 1537
|||||
Sbjct 944 GTGAAG 949
> Ahg914333 jgi|Araly1|914333|Al_scaffold_0001_4587
Length=564
Score = 366 bits (198), Expect = 4e-100
Identities = 412/514 (80%), Gaps = 20/514 (4%)
Strand=Plus/Plus
Query 1984 ATGGTACATAGAGATGTCAAAACCACAAATATATTGTTGGATGAACATTTTCAGGCCAAG 2043
||||| ||||| || |||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 1 ATGGTTCATAGGGACGTCAAAACCACAAATATATTGTTGAATGAACACTTTGAGGCCAAA 60
Query 2044 CTTGCTGATTTCGGTCTTTCGAGATCTTTTCCTCTTGAAGGAGAAACCCGTGTGGAC-AC 2102
||||||||||| || |||||||| || ||||| ||||||| || || | ||| | | ||
Sbjct 61 CTTGCTGATTTTGGACTTTCGAGGTCATTTCCAATTGAAGGCGAGACTCATGT-GTCAAC 119
Query 2103 AGTTGTTGCTGGAACTCCTGGGTACCTTGATCCAGAATATTATCGAACAAATTGGTTGAA 2162
|||||||||||| ||| ||| ||||||||||| |||||||| || |||||| ||||| |
Sbjct 120 AGTTGTTGCTGGTACTATTGGATACCTTGATCCCGAATATTACCGTACAAATAGGTTG-A 178
Query 2163 CGAG-AAA-AGTGATGTTTATAGCTTTGGAATCGTACTATTAGAGATCATCACAAACCAA 2220
| || ||| ||||| || || || ||||| || ||| |||| ||||| || |||||| ||
Sbjct 179 C-AGAAAAGAGTGACGTCTACAGTTTTGGTATTGTAATATTGGAGATAATTACAAACAAA 237
Query 2221 -CATGTGATCAACCAAAGTCGTGAAAAACCACATATAGCTGAATGGGTTGGGGTGATGCT 2279
|| ||||| |||||| |||||||| | ||| ||||| |||||||| || |||||
Sbjct 238 CCA-GTGATTGACCAAAACCGTGAAAAGCGACACATAGCAGAATGGGTAGGACAAATGCT 296
Query 2280 TACAAAAGGAGACATCAAAAGCATTATAGATCCAAAATTT--AGTGGAGATTATGA-TGC 2336
|||||||||||||||||||||||||| ||||||| | | | ||||||||| || | |
Sbjct 297 TACAAAAGGAGACATCAAAAGCATTACGGATCCAAG-TCTCCA-TGGAGATTACGACT-C 353
Query 2337 TGGTTCTGTCTGGAGAGCAGTTGAACTAGCAATGTCGTGTGTAAATCCTTCTTCAACTGG 2396
|||||| || |||| ||| || ||| | |||||||||||| | ||||||||||| | |
Sbjct 354 TGGTTCAGTTTGGAAAGCTGTCGAATTGGCAATGTCGTGTCTGAATCCTTCTTCGA-TAA 412
Query 2397 A-AGACCAACCATGTCTCAAGTTGTAATC-GAATTAAATGAATGTTTGGCATCAGAAAAC 2454
| ||||| || ||| |||||||||| || ||| |||| || ||||| |||||||||||
Sbjct 413 ATAGACCGACAATGACTCAAGTTGTT-TCTGAACTAAACGAGTGTTTAGCATCAGAAAAT 471
Query 2455 TCAAGGAGAGGA-ATGAGTCAAAACATGGAGTCA 2487
| ||| ||||| | ||||||| | ||||| |||
Sbjct 472 TTGAGGGGAGGACA-GAGTCAAGAGATGGATTCA 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100253524840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5