BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04305.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342773 jgi|Araly1|342773|fgenesh1_pg.C_scaffold_3002536 1232 0.0
> Ahg342773 jgi|Araly1|342773|fgenesh1_pg.C_scaffold_3002536
Length=1362
Score = 1232 bits (667), Expect = 0.0
Identities = 752/794 (95%), Gaps = 2/794 (0%)
Strand=Plus/Plus
Query 758 TGTGATTGAGGAGCATGTTCTTGAGTTCTTGTTGAAAATGAACCATTCTGAGGAAGCTGA 817
||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct 570 TGTTATTGAGGAGCATGTTCTTGAATTCTTGCTGACTATGAACCATTCTGAGGAAGCTGA 629
Query 818 TAACCCTGTGCCAACTTCTGTTTCGAATCTTGTTGTGCATATTATTGACACACATGTTGA 877
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 630 TAACCCTGTGCCAACTTCTGTTTCGAATCTTGTTGTGCATATTATTGATACACATGTTGA 689
Query 878 TC-GACTTCAAGATGTTGTTACTGAACTTGAGATCGAATTGGATGGGGTGGAGCTAGAAA 936
|| | |||||||||||||||||| ||||||||||||||||||||| ||||| || ||||
Sbjct 690 TCAG-CTTCAAGATGTTGTTACTAAACTTGAGATCGAATTGGATGCTGTGGAACTCGAAA 748
Query 937 TGGATAGAGGTGGATTTGCTATGAAGAAAAAGATGTTGGATGATAGAAGGTTCCCGAAAT 996
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 749 TGGATAGAGGTGGATTTGCTATGAAGAAACAGATGTTGGATGATAGAAGGTTCCCTAAAC 808
Query 997 TGCATCTCAACTTGCAGCGTCTATTGCAGGTGATTGCGCATGGAGAACAAGTATTTCCAA 1056
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 809 TGCATCTCAACTTGCAGCGTCTTTTGCAGGTGATTGCACATGGAGAACAAGTATTTCCAA 868
Query 1057 GAGTGAAAGAAAAATGTTCCACGAAGCCTTGGTTTCTGGCAGAAGACATCCACTCGTTGG 1116
||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 869 GAGTGAAGGAAAAATGTTCAACGAAGCCTTGGTTTCTGGCAGAAGACATCAACTCGTTGG 928
Query 1117 AAGAGTTGATTGGGAGGTTAAGACGTTTAAAAGAGAATGTAGGCTTCATTGCGAACCGTG 1176
|||||||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 929 AAGAGTTGATTGGGCGGTTAAGACGGTTAAAAGAAAATGTAGGCTTCATTGCGAATCGTG 988
Query 1177 TGACTGCAATCCAAGCTGGGTTGGATAGCTGGCAAGCCGAACAAATCAACCGAAAGCTCT 1236
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 989 TGACTGCAATTCAAGCTGGTTTGGATAGCTGGCAAGCCGAGCAAATCAACCGAAAGCTCT 1048
Query 1237 ATTACCTCTCCTTTCTTTCCATCATATTCCTTCCTCTATCAATTATAACCGGAGTTTTTG 1296
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1049 ATTACCTCTCCTTTCTTTCCATCATATTCCTTCCTCTATCGATTATTACCGGAGTTTTTG 1108
Query 1297 GGATGAATGTTGGAGGAGTACCTTGGACGGGACAAGACAAACCGGAGCTAAGAGACGGAT 1356
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1109 GAATGAATGTTGGAGGAGTACCTTGGACGGGACAAGACAAACCGGAGCTAGGAGACGGAT 1168
Query 1357 TCAGAAATGTGATGTACATCTGTTTGATAATGCTGGTTCTAGTGTTGTGCTGCTTCGGCT 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1169 TCAGAAATGTGATGTACATCTGTTTGATAATGCTGGTTCTAGTGTTGTGCTGCTTTGGTT 1228
Query 1417 TTCCAGCGTTATATAGTCGCATAGCGTCTTGGTGGGGAACGAGAGATATGAAAAGAAGTT 1476
||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 1229 TTCCAGCGTTATATAGTCGGATAGCTTCTTGGTGGAGAATGAGAGATATGAAAAGAAGTT 1288
Query 1477 GGTCTCTTAACAGAAGATCGTTTAAGAAGATACCAAACATAGTCCAAGAAAGAAAAGGCT 1536
|||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 1289 GGTCTCTTAACAGAAGATCGTTCCAGAAGAGACCAAACATAGTCCAAGAAAGAAGAGGCT 1348
Query 1537 ACCTTAGGCTCTAA 1550
||||||||||||||
Sbjct 1349 ACCTTAGGCTCTAA 1362
Score = 758 bits (410), Expect = 0.0
Identities = 490/527 (93%), Gaps = 12/527 (2%)
Strand=Plus/Plus
Query 249 ATGCAGCAGCAAGATCGAATT-G-G-TG-A-T-GA--A-ACAGATCTTGAGTCTTTCACA 299
||||||||||||||||||||| | | || | | || | || |||||||||||||| |||
Sbjct 1 ATGCAGCAGCAAGATCGAATTGGTGATGAAGTAGATGAGACGGATCTTGAGTCTTTAACA 60
Query 300 AGTAGTGTTCCTAGTAGAGACGCTTCTCATAGGTTTAGTTCTCATCAGTTCTCAGGAATG 359
|||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 61 AGTAGTGTTCCTCGTAGAGACGCTTCACATAGGTTTAGTTCTCATCAATTCTCAGGAATG 120
Query 360 GTTAGACAAAGAGCTTATATATTTGATGGTGATGGTAAATACTATAACAAAGAATGGGAT 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGAGACAAAGAGCTTATATATTTGATGGTGATGGTAAATACTATAACAAAGAATGGGAT 180
Query 420 CTTGCTGAAGGAACAGGGAAAGAGTTTTGTTGGTATCATGTTGAATTACCTAAAGGAAAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTGCTGAAGGAACAGGGAAAGAGTTTTGTTGGTATCATGTTGAATTACCTAAAGGAAAT 240
Query 480 CAGAAGCTTTCTCAATCTGCTCAGCATTTGATTGATGCTTTATGCCCACCATTGAAGCTT 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 241 CAGAAGCTTTCTCAATCTGCTCAGCATTTGATTGATGCTTTATGTCCACCATTGAAG-TT 299
Query 540 -CAGGACATTCTTGCTCTTGCTAGTAATGGACCCTTTTGTGGGCATGTTGATGGAGCGCT 598
|| ||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct 300 GCAAGACATTCTTTCTCTTGTTAGTAATGGGCCCTTTTGTGGGCATGTTGACGGAGCGCT 359
Query 599 TGTCTTTAGAGTTAATTCTCCTGGTCCTGCTTCTAGTAGTAATACGTTTAAGATTGCTGC 658
||| ||| |||||||||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct 360 TGTGTTTCGAGTTAATTCACCTGGTCCTGCTTCGAGTAGTTTTACGTTCAAGATTGCTGC 419
Query 659 GAGGATTACTGAGAACTCTGTGATCACTGTTTCTTTAGGACGAGTTCCTAGGTTAGGTTT 718
|||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 420 TAGGATTACTGAGAATTCTGTGATCACTGTGTCTTTAGGACGGGTTCCTAGGTTAGGATT 479
Query 719 CTCGCCTATGGGTCAATCGCTTCTCTCGGAAGTTCCTAGTGTG-ATT 764
|||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 480 CTCGCCTATGGGTCAATCACTTCTCTCGGAAGTTCCTAGTGTGGATT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5