BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04340.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930751 jgi|Araly1|930751|scaffold_303208.1 857 0.0
> Ahg930751 jgi|Araly1|930751|scaffold_303208.1
Length=562
Score = 857 bits (464), Expect = 0.0
Identities = 520/548 (95%), Gaps = 0/548 (0%)
Strand=Plus/Plus
Query 106 GAAGATCCCTGTTTCTGGTTATGATGTCTCGACAGAGTCAGTTATTTACATTGCTTAGGA 165
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1 GAAGATCCCTGTTTCTGGTTATGATGTCTCGGCAGAGTCAGTTATTTACATTGCTTAAGA 60
Query 166 GAAGGTTTCATTCACCGTCTAATGATGCCCCAACGGAGACCTTAAGAAAGAAGATAGCCG 225
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGGTTTCATTCCCCGTCTAGTGATGCCCCAACGGAGACCTTAAGAAAGAAGATAGCCG 120
Query 226 ATTTGCAAAAGAGTAAGAAGCGAAGGAACCCAATAAAGAACCAGTTTCTAGTTGAGGTTC 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTTGCAAAAGAGTAAGAAGCGAAGGAACCCAATAAAGAACCAGTTTCTAGTTGAGGTTC 180
Query 286 CAGAATCAAGATCATATTTAGACACAGCAACGATGCCTATGTTCCTCGCTGTTGTAGGTA 345
||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 181 CAGAATCAAGATCGTATTTGGACACAGCAACGATGCCTATGTTCCTCGCTGTGGTCGGTA 240
Query 346 TCGCATTATTTGCAAAGGTGCTAATGATGATCGATGATTCGAAATCGCAAGAAATGATTG 405
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 241 TCGCATTGTTTGCAAAGGTGTTAATGATGATCGATGATTCGAAATCCCAAGAAATGATTG 300
Query 406 AACGCAAGATAAAGAATGCACCACAGGGGCAAGGCACGGTACGAATGATCGATCGTGAGG 465
|||| |||||||| |||||||||| ||| |||||||| || || |||||||| || ||||
Sbjct 301 AACGAAAGATAAAAAATGCACCACCGGGACAAGGCACAGTGCGGATGATCGAGCGAGAGG 360
Query 466 AGTGGGATGAGTTTAGAGAAGTAAGGCCAAGAACACCTTTTGAGTCAAAGCTTGCTCGCC 525
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 AGTGGGATGAGTTTAGAGAAGTAAGGCCAAGAACACCTTTTGAGTCCAAGCTTGCTCGCC 420
Query 526 CAAATGCACAAATAAGAACTGGAGAACCTGTGCGCAAGGATGACTTGAAAAACTGGACAA 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAAATGCACAAATAAGAACTGGAGAACCTGTGCGCAAGGATGACTTGAAAAACTGGACAA 480
Query 586 TAGACGTGCTAACAAATGCTCTTGAACGAACCGAAGAAAGTGTTCGCCGTGGTTCCAGTT 645
|||| ||||||||||| || || |||||||||||||||||||||||||| | |||||||
Sbjct 481 TAGATGTGCTAACAAACGCACTGGAACGAACCGAAGAAAGTGTTCGCCGCAGATCCAGTT 540
Query 646 AGATTTTC 653
||||||||
Sbjct 541 AGATTTTC 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5