BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04360.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342776 jgi|Araly1|342776|fgenesh1_pg.C_scaffold_3002539 1277 0.0
> Ahg342776 jgi|Araly1|342776|fgenesh1_pg.C_scaffold_3002539
Length=984
Score = 1277 bits (691), Expect = 0.0
Identities = 896/990 (91%), Gaps = 33/990 (3%)
Strand=Plus/Plus
Query 27 ATGTTGGGAAGCA-TAAGCCTCATCTCCTGCAACTTCTCTCGCCTTCCACGTCTTCTTAA 85
||||||| ||||| ||| |||||||||||||||||||||||| ||||| | |||||||||
Sbjct 1 ATGTTGGAAAGCATTAA-CCTCATCTCCTGCAACTTCTCTCGTCTTCCTCTTCTTCTTAA 59
Query 86 ACCCTCCACTCGAC-CTCAAACCCTAACACAATCCTCAAGCCTCCTTCTTCTTCTTCAAT 144
|||||| | | || | ||| || ||| ||||||| ||| | ||| |||||||| ||||
Sbjct 60 ACCCTCGAGACCACAC-CAATCCTTAAGACAATCCCCAAAACACCTCCTTCTTCTACAAT 118
Query 145 CACGAGCTTCTTCTTC-ACCAC----ATAGAATTGCC-CT----TT-TCC-CGA-AAT-A 190
|||||||||||||||| | || || || | || | || ||| | | ||| |
Sbjct 119 CACGAGCTTCTTCTTCTTCAACTTTTCTA-AAAT-CCGATAAAATTCTCCACCACAATCA 176
Query 191 -CG-----AGAAGAAAGTCACATTCTTCCATATCTGCAAAAGCTCTTCAAACAACCCAGA 244
|| || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 177 CCGTTTCTCGAGGAAAGGCACATTCTTCCATATCTGCAAAAGCTCTTTAAACAACCCAGA 236
Query 245 AGAACCAGAGAAGACTCAAATTCAAGATGAAGGAAGAGACTGGTCTAGCTCAATTTTGCT 304
|||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 237 AGAACCAGAGAAAACTCAAATTCAAGAAGAAGGAAGAGATTGGTCAAGCTCAATTTTGCT 296
Query 305 TTTTGCGCTT-TGGGGTGCGCTCTTGTACTATTGCTTCAATCTCGCTCCTGATCAAACAC 363
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 297 TTTTGCG-TTATGGGGTGCGCTTTTGTACTATTGCTTCAATCTCGCTCCTGATCAAACAC 355
Query 364 CCACACAAGACTTGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGATGGTTTTA 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CGACACAAGACTTGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGATGGTTTTA 415
Query 424 GAATGAATCAGATCCTTGTTGGGTTATGGTACATCATGGGTTTGTGGCCTTTGGTTTATG 483
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 416 GAATGAATCAGATCCTTGTTGGGTTATGGTACATTATGGGTTTGTGGCCTTTGGTTTATG 475
Query 484 CCATGCTCTTGCTTCCCACTGGTAC-AAGTAAAACACCGGCTTGGCCTTTCGTTGTGCTT 542
|||||||||||||||||||| | | ||||||||| |||||||||||||| || ||||||
Sbjct 476 GCATGCTCTTGCTTCCCACTGCT-CGAAGTAAAACTCCGGCTTGGCCTTTTGTCGTGCTT 534
Query 543 TCCTTTTTCGGTGGTGTTTATGCTTTGTTACCTTATTTTGCACTGTGGAATCCTCCTTCT 602
|| |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 535 TCGTTTTTCGGTGGTGTATATGCTTTGTTACCTTATTTTGCCCTGTGGAGTCCTCCTTCT 594
Query 603 CCTCCTGTTTCAGAGACTGAGCTGAGACAATGGCCTTTGAATGTTCTGGAATCAAAAGTA 662
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 595 CCTCCTGTTTCAGAGACTGAACTGAGACAATGGCCTTTGAATGTTCTGGAATCAAAAGTC 654
Query 663 ACTGCTGGGGTCACTCTAGTTGCAGGACTGGGTATAATTCTTTATTCAGTTGTCGGTAAT 722
||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 655 ACTGCTGGGGTAACTCTTGTTGCAGGACTGGGTATAATTCTTTATTCAGTAGTTGGTAAT 714
Query 723 GCCGGTGATTGGACGGAGTTTTATCAGTACTTTCGAGAGAGCAAATTTATTCATGTTACA 782
|||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 715 GCCGGTGACTGGACAGAGTTCTATCAGTACTTTCGAGAGAGCAAATTCATTCATGTAACG 774
Query 783 AGTCTTGATTTCTGTTTACTCTCTGCATTTGCTCCGTTTTGGGTTTACAACGACATGACC 842
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 775 AGTCTTGATTTCTGTTTACTGTCTGCATTTGCTCCGTTTTGGGTTTACAACGACATGACC 834
Query 843 ACCCGAAAATGGTTTGATAAAGGCAGTTGGCTGTTACCGGTATCGGTGATTCCATTCTTG 902
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 835 ACCCGAAAATGGTTTGACAAAGGCAGTTGGCTTTTACCGGTATCGGTGATTCCATTCTTG 894
Query 903 GGACCTTCTTTGTATCTACTCCTACGACCAGCAGTGTCAGAGACGATA---GCTCCCAAA 959
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 895 GGACCTTCTTTGTATCTTCTCCTACGACCAGCAGTGTCAGAGACGATAATAGCTCCCAAA 954
Query 960 GATACTGCATCATCTGACCCAAATCAATAG 989
||| |||||||||||||||||||| |||||
Sbjct 955 GATTCTGCATCATCTGACCCAAATAAATAG 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5