BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G04390.1

Length=684
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487263 jgi|Araly1|487263|fgenesh2_kg.6__397__AT2G04390.1          806    0.0  


> Ahg487263 jgi|Araly1|487263|fgenesh2_kg.6__397__AT2G04390.1
Length=565

 Score =  806 bits (436),  Expect = 0.0
 Identities = 494/519 (95%), Gaps = 15/519 (3%)
 Strand=Plus/Plus

Query  91   GTAACTGAAAGATGGGGCGTGTTAGAACCAAGACCGTGAAGAAATCTTCTCGTCAAGTCA  150
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1    GTAACTGAAAGATGGGGCGTGTAAGAACCAAGACCGTGAAGAAATCTTCTCGTCAAGTCA  60

Query  151  TTGAGAAGTACTACTCTCGCATGACTCTTGACTTTCACACTAACAAGAAGATCCTTGAAG  210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTGAGAAGTACTACTCTCGCATGACTCTTGACTTTCACACTAACAAGAAGATCCTTGAAG  120

Query  211  AGGTTGCCATCATCCCATCAAAGAGACTCCGCAACAAGATTGCTGGATTCTCCACCCACT  270
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGGTTGCCATCATCCCTTCAAAGAGACTCCGCAACAAGATTGCTGGATTCTCCACCCACT  180

Query  271  TGATGAAACGTATCCAGAAGGGACCAGTCCGTGGAATCTCACTCAAGCTTCAAGAAGAAG  330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TGATGAAACGTATCCAGAAGGGACCAGTCCGTGGAATCTCACTCAAGCTTCAAGAAGAAG  240

Query  331  AGCGTGAACGCCGTATGGACTTTGTTCCCGATGAGTCTGCTATCAAGACTGATGAGATCA  390
            ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct  241  AGCGTGAACGCCGCATGGACTTTGTTCCCGATGAGTCTGCTATCAGGACCGATGAGATCA  300

Query  391  AGGTCGACAAAGAGACTCTTGAGATGCTTGCTTCTCTAGGAATGTCTGACACTCTCGGCA  450
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  301  AGGTCGACAAAGAGACTCTTGAGATGCTTGCTTCTCTAGGAATGTCTGACACTCCCGGCA  360

Query  451  TCTCTGCAGTCGACCCACAACAAGCTATGGCACCAATCCCTGCTTTCGGCGGCGGCAGGG  510
            ||||||||||||| |||||| |  |||||||||||||||||||||||||| |    ||  
Sbjct  361  TCTCTGCAGTCGAGCCACAA-A--CTATGGCACCAATCCCTGCTTTCGGCAG----AG--  411

Query  511  CACCCAGAAGATACTAAGATGGACGATTGGCTCTCTTTTTTCACAGTTAGGGACAAGAAA  570
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  412  CACCCAGAAGATACTAAGATGGACGATTGGCTCTCTTTTTTCACAGTTAGGGACAACAAA  471

Query  571  GACTTGTG-T----GGT-TGTTTATTGTTTCTTTTGATT  603
            |||||||| |    ||  |||||||||||||||||||||
Sbjct  472  GACTTGTGGTTCTTGGAATGTTTATTGTTTCTTTTGATT  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25123002303


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5