BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04400.1
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480086 jgi|Araly1|480086|fgenesh2_kg.3__2787__AT2G04400.1 2104 0.0
> Ahg480086 jgi|Araly1|480086|fgenesh2_kg.3__2787__AT2G04400.1
Length=1347
Score = 2104 bits (1139), Expect = 0.0
Identities = 1292/1364 (95%), Gaps = 18/1364 (1%)
Strand=Plus/Plus
Query 29 TTCAAAAGTTCGAAACttttttttttCCGGCAATGGAGGGACTAGTTCCGGTACAGAGAC 88
||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTC-AAAGTTTGAAAC-TTTTTTTTTCCGGCAATGGAGGGACTAGTTCCGGTACAGAGAC 58
Query 89 TTCCAATTAAAGTGGCTTCACCTTCTCTGTATCGGTGTAACAATTCTGTCTCAATCAGAC 148
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTCCGGTTAGAGTGGCTTCACCTTCTCTGTATCGGTGTAACAATTCTGTCTCAATCAGAC 118
Query 149 GTTCAATTTCAGGTTTTGCCATGGACAGGAAGATAAACTTTAGGGCTCCGTCGCAATTCT 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GTTCAATTTCAGGTTTTGCCATGGACAGGAAGATAAACTTTAGGGCTCCGTCGCAATTCT 178
Query 209 CGATCCGAGCTCAACAGTCGGATTTGAAGGAAAGCTTAGCTGTGTCTTCTTCATCAGTAG 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CGATCCGAGCTCAACAGTCGGATTTGAAGGAAAGCTTAGCTGTGTCTTCTTCATCAGTAG 238
Query 269 AGGATAAAGGAAATGTTCTTAGAATCAAGGAATGGGAAGTAGAGATGTATCAGGAGGAAT 328
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 AGGATAAAGGAAATGCTCTTAGAATCAAGGAATGGGAAGTGGAGATGTATCAGGAGGAAT 298
Query 329 TAGCTATTAGTCAAGGTATTAGGATAAGGAGAAAACCACCAAGTAAGGCTCCTTTGGGAT 388
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 TAGCCATTAGTCAAGGTATTAGGATAAGGAGAAAACCACCGAGTAAGGCTCCTTTGGGAT 358
Query 389 ACTCTGGACCATTTGAGTTGAGATTGCATAAC-AATGATGCTGATTCTCCTCGTAATATC 447
||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 359 ACTCTGGGCCATTTGAGTTGAGATTGCATAATGAA-GATGCTGATTCTCCTCGTAATATC 417
Query 448 TTGGAGGAGATCACATGGTACAAAGACGTAGAAGTTTCCCGGATGAAGGAGCTAAATCCG 507
||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||| |||
Sbjct 418 TTGGAGGAGATTACATGGTACAAAGACGAAGAAGTTTCGCGGATGAAGGAACTAAACCCG 477
Query 508 CTTGACGTGCTGAAGAAAGCTGTAGAGGATGCTCCTCCTACTAGGGATTTTGTTGGGGCT 567
||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 478 CTTGACGCGCTGAAGAAAGCTGTAGAGGATGCTCCTCCAACCAGGGATTTTGTCGGGGCG 537
Query 568 CTTAGGATGGCTCATAAAAGAACTGGCTTCCCTGGCTTGATAGCTGAGGTTAAGAAGGCT 627
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 538 CTTAGGATGGCTCATAAAAGAACTGGGTTCCCTGGGTTGATCGCTGAGGTTAAGAAGGCT 597
Query 628 TCTCCAAGTAGAGGAATCTTAAAAGAGAATTTTGACCCGGTCGAGATTGCTCAAGCTTAT 687
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 598 TCTCCAAGTAGAGGAATCTTAAAAGAAAATTTTGACCCGGTCGAGATTGCTCAAGCATAT 657
Query 688 GAAAAAGGCGGAGCAGCATGCCTCAGCGTTTTGACAGACCAGAAGTATTTCCAGGGAGGC 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAAAAAGGCGGAGCAGCATGCCTCAGCGTTTTGACAGACCAGAAGTATTTCCAGGGAGGC 717
Query 748 TTTGAAAACTTGGAAGCAATAAGGAGCGCTGGTGTGAAGTGTCCACTATTATGCAAAGAG 807
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTTGAAAACTTGGAAGCAATTAGGAGCGCTGGTGTGAAGTGTCCACTATTATGCAAAGAG 777
Query 808 TTTGTTGTAGATCCATGGCAGATCTACTATGCTCGGACTAAAGGCGCAGATGCAGTACTG 867
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||
Sbjct 778 TTTGTTGTAGATCCATGGCAGATCTACTATGCCCGGACTAAAGGCGCGGACGCAGTATTG 837
Query 868 CTTATTGCTGCTGTATTGGCTGACCTAGAAATAACCTTCTTGCTTAAGATTTGCAAGAAG 927
|||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||
Sbjct 838 CTTATTGCTGCTGTATTGACTGACCTAGAAATAACCTACTTGCTTAAGATCTGCAAGAAG 897
Query 928 CTTAGCTTGGCTGCCCTTGTTGAGGTACATGATGAGAGAGAGATGGGTCGTGTACTTGGA 987
|| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 898 CTGAGTTTGGCTGCACTTGTTGAGGTACATGATGAGAGAGAGATGGGTCGTGTGCTTGGA 957
Query 988 ATAGAAGGAATCGAGCTTGTTGGCATCAATAACCGAAGTCTTGAAACATTTGAAGTGGAC 1047
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 958 ATAGAAGGAATCGAGCTTGTTGGCATCAATAACCGAAGCCTTGAAACATTTGAAGTGGAC 1017
Query 1048 ATCAGTAATACAAAGAAGCTTCTTGAAGGAGAGCATGGTAGACAAATCCGTGAGAGAGAC 1107
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ATCAGTAACACAAAGCAGCTTCTTGAAGGAGAGCATGGTAGACAAATCCGTGAGAGAGAC 1077
Query 1108 ATGATTGTGGTTGGCGAATCTGGTCTGTTTACACCAGATGACATTGCCTATGTACAAGCA 1167
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATGATTGTGGTTGGCGAATCTGGTCTGTTTACACCAGATGACATTGCCTATGTACAAGCT 1137
Query 1168 GCCGGAGTCAAAGCAGTTTTGGTTGGAGAATCCATTGTGAAGCAGAACGACCCTGAGAAA 1227
|| ||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 1138 GCTGGAGTTAAAGCGGTTTTGGTTGGTGAGTCCATTGTCAAGCAGAACGACCCTGAGAAA 1197
Query 1228 GGAATAGCTGGACTTTTTGGCAGGAACATTTCTCATACTTAGAGACCATATCATAATACA 1287
||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 1198 GGAATAGCTGGACTTTTTGGCAGGAACATTTCTCATACTTAGA-----TA-CAT----C- 1246
Query 1288 TCTCCAAATACGTTTCCTAGTACATTTGTTTTGTATCTTGCTCTGTGAGTATTGAGGAAA 1347
|| | ||||| |||||||||||||||||||| |||||||| | |||||||||||||||||
Sbjct 1247 TC-C-AAATATGTTTCCTAGTACATTTGTTT-GTATCTTGTTTTGTGAGTATTGAGGAAA 1303
Query 1348 GACTAGAAAGGTTTGTTGGTTCTGATGTTTAAGACATTTTCAAA 1391
||||||||||| |||||| |||||||||| |||||||||||||
Sbjct 1304 GACTAGAAAGGCTTGTTGACTCTGATGTTTCAGACATTTTCAAA 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53402523490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5