BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G04410.1

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg319258 jgi|Araly1|319258|fgenesh1_pm.C_scaffold_3002274           366    9e-101


> Ahg319258 jgi|Araly1|319258|fgenesh1_pm.C_scaffold_3002274
Length=216

 Score =  366 bits (198),  Expect = 9e-101
 Identities = 211/217 (97%), Gaps = 2/217 (1%)
 Strand=Plus/Plus

Query  128  ATGACCCTTCATCAGCTGAGGGGTTTACTGTTATCTTCAACAAAGCTAGAAACGAGAAGA  187
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct  1    ATGACCCTTCATCAGCTGAGGGATTTACTGTTATCTTCAACAAAGCTAGAAACGAGAA-A  59

Query  188  AA-GGAGGTGGAAAATCTGACTCACCAGGGAAAGATGAACCTGGATATAATAAAAATGGG  246
            || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   AAGGGAGGTGGAAAATCCGACTCACCAGGGAAAGATGAACCTGGATATAATAAAAATGGG  119

Query  247  GAAGTTCTTGAGAAACCCGCCAAAAAATGGTTTTGCTGTATACGCGCAGAATAAGTGGAG  306
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  120  GAAGTTCTTGAGAAACCCGCCAAAAAATGGTTTTGCTGTATACGCTCAGAATAAGTGGAG  179

Query  307  AGGTGTTTGCCTTGGAAGGTCTTTTATCTATATCTAA  343
            ||||||||||||||||||||| |||||||||||||||
Sbjct  180  AGGTGTTTGCCTTGGAAGGTCGTTTATCTATATCTAA  216



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22492521030


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5