BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04430.1
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480088 jgi|Araly1|480088|fgenesh2_kg.3__2789__AT2G04430.1 1413 0.0
Ahg905784 jgi|Araly1|905784|Al_scaffold_0003_2912 603 1e-171
> Ahg480088 jgi|Araly1|480088|fgenesh2_kg.3__2789__AT2G04430.1
Length=946
Score = 1413 bits (765), Expect = 0.0
Identities = 890/950 (94%), Gaps = 10/950 (1%)
Strand=Plus/Plus
Query 41 GACATGGGTTTGACAAAAAACTTTGCTTTTCTT-GTGTTTTGTTGTCAAAGATACTGTAG 99
|||||||||||||| |||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 2 GACATGGGTTTGAC-AAAATCATTGCTTTTCTTGGTGTTTTGTTGTCAAAGATACTGTAG 60
Query 100 CATGGACGGTGAAGCTTTTG-AAATCTCATTACTTGATGGAGAAGAAGACAGATTTGGAG 158
|||||||||||||| | | |||| |||||||||||||||| |||||||||||||||||
Sbjct 61 CATGGACGGTGAAG-GTCAGCAAATTTCATTACTTGATGGAGTAGAAGACAGATTTGGAG 119
Query 159 GTACTGTGGTGAACTTGATGGAAGTGGAATCCATGACTATTG-GTGATTTTGATTCAAAG 217
||| |||||||||||||||||||||||||||||||| | ||| | ||||||||| |||||
Sbjct 120 GTATTGTGGTGAACTTGATGGAAGTGGAATCCATGAATGTTGAG-GATTTTGATGCAAAG 178
Query 218 CTTGATGTTTCACTTAAGGCTTGGAAGGATCAGGGGAAGAAGGGGATTTGGATAAAGCTG 277
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 CTTGATAATTCACTTAAGGCTTGGAAGGATCAGGGGAAGAAGGGGGTTTGGATAAAGCTG 238
Query 278 CCTAGTGAGCTATCTAGTCTTGTTGATACTGCAATTAAGAAAGGGTTTACATACCACCAT 337
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 CCTCGTGAGCTATCTAGTCTTGTTGACACTGCAATTAAGAAAGGGTTTACATACCACCAT 298
Query 338 GCCGAGAATGAGTATGTGATGCTTACATTTTGGCTTCCAGAGCCACCTAGCACTCTTCCT 397
||||||||||| || ||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 299 GCCGAGAATGAATACGTGATGCTTACATCTTGGCTTCCCCAGCCACCTAGCACTCTTCCT 358
Query 398 TGCAATGCTTCTCATCGTATTGGGATCGGTGCTTTTGTCCTAAACAAGAACGGAGAGATG 457
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 TGCAATGCTTCTCATCGTATTGGGATCGGTGCTTTTGTCCTGAACAAGAACGGAGAGATG 418
Query 458 CTTGTGGTTCAGGAGAATAGTGGATATTTCAA-AGATAAAAATGTCTGGAAGGTGCCTAC 516
||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||
Sbjct 419 CTTGTGGTTCAGGAGAATAGTGGATATTT-AAGAGATAACAATGTGTGGAAGGTGCCTAC 477
Query 517 CGGTACTATTAAAGAGGGTGAGAGTATCTGGGCTGGAGCAGTTAGGGAAGTGAAAGAAGA 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CGGTACTATTAAAGAGGGTGAGAGTATCTGGGCTGGAGCAGTTAGGGAAGTGAAAGAAGA 537
Query 577 AACTGATATTGATGCAGAGTTTGTAGAAGTCTTGTCTTTCATGGAAAGTCACCAAGCAGT 636
|||||||||||||||||| |||||||||||| || ||||||||||||| |||||||||||
Sbjct 538 AACTGATATTGATGCAGAATTTGTAGAAGTCCTGGCTTTCATGGAAAGCCACCAAGCAGT 597
Query 637 GTGGCAAAGAAAAACGGATATATTTTTCGTCTGCGAGTTGGAAGCAAGAACTTTTGAAAT 696
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 598 CTGGCAAAGAAAAACGGATATATTTTTCGTCTGTGAGTTGGAAGCAAGCACATTTGAAAT 657
Query 697 CCAGAAACAAGATTCTGAGATCCATGCTGCTAAGTGGATGCCGGTTGAGGAATACGTAAA 756
| |||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 658 CAAGAAACAAGACTCTGAAATCTATGCTGCTAAGTGGATGCCGGTTGAGGAATACGTAAA 717
Query 757 CCAACCCTATCACAACAAGGAGGGGAACGAGATGTTCAAGTTAATAGCTAACATCTGCTT 816
|||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 718 CCAACCCTTTCACAGCAAGGAGGGGAACGAAATGTTTAAGTTAATAGCTAACATCTGCTT 777
Query 817 AAAAAGGTCGCGGGAGAAGTACACGGGCTTCGTTCTTACTACGAATTCAGCCAAAAA-GA 875
||| ||||||||||| |||||||| |||||||||||||||||| ||||| ||||||| ||
Sbjct 778 AAAGAGGTCGCGGGACAAGTACACCGGCTTCGTTCTTACTACGGATTCA-CCAAAAAAGA 836
Query 876 GCCTTTACTGCAGCGTCGATCACGCCAACCTCCTGAAGGAAACAGCTGACCAAGCCTCCA 935
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 837 GCCTTTACTGTAGTGTCGATCACGCCAACCTCCTGAACGAAACAGCTGACCAAGCCTCCA 896
Query 936 CCTCTCTCTCTGACTAGTCGGAAAGTGTTTCTGCTTCTTTGTTTCACGTC 985
||||||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 897 CCTCTCTCTCTGACTAGTCAGAATGTGTTTCTGCTTCTTTGTTTAACGTC 946
> Ahg905784 jgi|Araly1|905784|Al_scaffold_0003_2912
Length=1110
Score = 603 bits (326), Expect = 1e-171
Identities = 620/757 (82%), Gaps = 40/757 (5%)
Strand=Plus/Plus
Query 99 GCATGGACGGTGAAGCTTTTGAAATCTCATTACTTGATGGAGAAGAAGACAGATTTGGAG 158
||||||||||||||||| ||| | |||||| ||||| ||||||| |||| ||| |
Sbjct 227 GCATGGACGGTGAAGCTCAACCGATCGCTTTACTTAATGGAAAAGAAGATAGATATGGCG 286
Query 159 GTACTGTGGTGAACTTGATGGAAGTGGAATCCATGACTATTGGTGA-TTTTGATTCAAAG 217
|| || || ||||| |||||||| ||| |||||||| || || |||| || |||||
Sbjct 287 GTGTTGAAGTCAACTTAATGGAAGTTGAACCCATGACTGCTGAAGAGTTTT-ATGCAAAG 345
Query 218 CTTGATGTTTCACTTAAGGCTTGGAAGGATCAGGGGAAGAAGGGGATTTGGATAAAGCTG 277
||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 346 CTTGACGTTTCTCTTAAGGCATGGAAGGATCAGGGGAAAAAGGGAATTTGGATAAAGCTG 405
Query 278 CCTAGTGAGCTATCT-AGTCTTGTTGATACTGCAATTAAGAAAGGGTTTACATACCACCA 336
||| ||||||| | | ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 406 CCTTGTGAGCT-TTTAAGTCTTGTTGACATTGCAATTAAGAAAGGGTTTACATACCACCA 464
Query 337 TGCCGAGAATGAGTATGTGATGCTTACATTTTGGCT-TCCAGAGCCA-CCTAGCACTCTT 394
||||||||| || |||| | | ||||||| |||| | || || | ||||||||| ||
Sbjct 465 TGCCGAGAAGGAATATGCGGTTCTTACATCTTGGATCTCT-GA-CTTGCCTAGCACTATT 522
Query 395 CCTTGC-AATGCTTCTCATCGTATTGGGATCGGTGCTTTTGTCCTAAACAAGAACGGAGA 453
||| || ||||||||||||||||||||||| |||||| |||| |||||||||||| ||||
Sbjct 523 CCT-GCCAATGCTTCTCATCGTATTGGGATTGGTGCTCTTGTACTAAACAAGAACAGAGA 581
Query 454 GATGCTTGTGGTTCAGGAGAAT-AGTGGATATTT-CAAAGATAAAA-A-TGTCTGGAAGG 509
| |||||||||||||||||| | | ||| | ||| ||||| || | ||| |||||
Sbjct 582 GGTGCTTGTGGTTCAGGAGATTGA-TGG-TGTTTTCAAAGGTACCGGACTGT--GGAAGC 637
Query 510 TGCCTACCGGTACTATTAAAGAGGGTGAGAGTATCTGGGCTGGAGCAGTTAGGGAAGTGA 569
| ||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 638 TTCCTACCGGTGTTATTCAAGAGGGTGAGGGTATTTGGGCTGGAGCAGTTAGGGAAGTAA 697
Query 570 AAGAAGAAACTGATATTGATG-CAGAGTTTGTAGAAGTCTTGTCTTTCATGGAAAGTCAC 628
|||||||||||| |||||| | || | ||||| ||||||||| |||| ||||||||||
Sbjct 698 AAGAAGAAACTGGTATTGA-GACAAAATTTGTTGAAGTCTTGGCTTTTGGGGAAAGTCAC 756
Query 629 CAAGCAGTGT-GGCAAAGAAAAACGGATATAT-TTTTCGTCTGCGAGTTGGAAGCAAGAA 686
||| || | | || |||||||||||||||||| ||||| | || ||||| ||| |||| |
Sbjct 757 CAATCATTCTTGG-AAAGAAAAACGGATATATATTTTC-TATGTGAGTTAGAACCAAGCA 814
Query 687 CTTTTGAAATCCAGAAACAAGATTCTGAGATCCATGC-TGCTAAGTGGATGCCGGTTGAG 745
| ||||||||| |||||||||| |||||||||| || |||||||||||||||| |||||
Sbjct 815 CATTTGAAATCAAGAAACAAGACTCTGAGATCC-TGGATGCTAAGTGGATGCCGATTGAG 873
Query 746 GAATACGTAAACCAACCCT--ATC-ACAACAAGGAGGGGAACGAGATGTTCAAGTTA-AT 801
||||||||||| ||||| | ||| | |||| | || | ||| | | || || | ||
Sbjct 874 GAATACGTAAAGCAACCTTTTATCCAGAACA-G-AGAG-AAC----T-T-CAGGT-ACAT 923
Query 802 AGCTAACATCTGCTTAAAAAGGTCGCGGGAGAAGTAC 838
|||||||| ||||| || ||||| |||||| |||||
Sbjct 924 GGCTAACATTTGCTTGAAGAGGTCTCGGGAGGAGTAC 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5