BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04440.1
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905784 jgi|Araly1|905784|Al_scaffold_0003_2912 614 3e-175
> Ahg905784 jgi|Araly1|905784|Al_scaffold_0003_2912
Length=1110
Score = 614 bits (332), Expect = 3e-175
Identities = 403/437 (92%), Gaps = 6/437 (1%)
Strand=Plus/Plus
Query 11 GCATGGACAGTGAAGCACAACAGATCTCTTTACTTATTGGAAAAGAAGATAGATACGGCC 70
|||||||| ||||||| |||| |||| ||||||||| |||||||||||||||||| |||
Sbjct 227 GCATGGACGGTGAAGCTCAACCGATCGCTTTACTTAATGGAAAAGAAGATAGATATGGCG 286
Query 71 GTGTTGAAGTAAACCTGATGGAAGTTGAACCCATGAATGCTGAAGA-TTTTAATGCAAAG 129
|||||||||| ||| | ||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 287 GTGTTGAAGTCAACTTAATGGAAGTTGAACCCATGACTGCTGAAGAGTTTT-ATGCAAAG 345
Query 130 CTTGACGTTTCAT-TTAAGGCATGGAAGGATCAGGGGAAAAAAGGAATTTGGATAAAGCT 188
||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 346 CTTGACGTTTC-TCTTAAGGCATGGAAGGATCAGGGGAAAAAGGGAATTTGGATAAAGCT 404
Query 189 TCCTTGTGAGCTTTCGAGTCTTGTTGACATTGCAATGAAGAAAGGGTTTACGTACCACCA 248
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 405 GCCTTGTGAGCTTTTAAGTCTTGTTGACATTGCAATTAAGAAAGGGTTTACATACCACCA 464
Query 249 TGCCGAGAATGAATATGCGGTGCTTAGTTCTTGGATCTCCGACTTGCCTAACACTATTCC 308
||||||||| ||||||||||| |||| ||||||||||| |||||||||| |||||||||
Sbjct 465 TGCCGAGAAGGAATATGCGGTTCTTACATCTTGGATCTCTGACTTGCCTAGCACTATTCC 524
Query 309 TGCCAATGCTTCTCATCGTATTGGCATCGGTGCTCTTGTCCTAAACAAGAACAGAGAGGT 368
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 525 TGCCAATGCTTCTCATCGTATTGGGATTGGTGCTCTTGTACTAAACAAGAACAGAGAGGT 584
Query 369 GCTTGCT-GTTCAGGAGATCGATGGTGTTTTCAAAGATACCGGACTGTGGAAGCTTCCTA 427
||||| | ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 585 GCTTG-TGGTTCAGGAGATTGATGGTGTTTTCAAAGGTACCGGACTGTGGAAGCTTCCTA 643
Query 428 CCGGTGTTATTCAAGAG 444
|||||||||||||||||
Sbjct 644 CCGGTGTTATTCAAGAG 660
Score = 235 bits (127), Expect = 3e-61
Identities = 185/211 (88%), Gaps = 11/211 (5%)
Strand=Plus/Plus
Query 443 AGAACAGAGAGAACTTCAGGTACATGGCTAACATCTGCTTGAAGAGGTCTCAAGAGAAGG 502
|||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||
Sbjct 899 AGAACAGAGAGAACTTCAGGTACATGGCTAACATTTGCTTGAAGAGGTCTCG-G-GA-GG 955
Query 503 AGTACTTAGGTTTCTCCAATGTCCTTACCAAGAATTCAACTGGTAAGGAGAGCTATCTTT 562
|||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||
Sbjct 956 AGTACTTAGGTTTCTCCACTGTCCTTACTAAGAATTTAACTGGTAAGGAGAGCTATCTTT 1015
Query 563 ACTGCAGCACCGACCACGCGTACTTTCTCAAAGGAAAGCCTGATCATAG-TTCTACTTCA 621
|||||| ||| | || | |||| ||||| ||||||| ||| ||| | |||||| ||
Sbjct 1016 ACTGCAACACGG-CC--G---ACTTCCTCAACGGAAAGCTTGACCAT-GCTTCTACGTCT 1068
Query 622 CTCTTCACAACTCTTTTGAGAAAGTGTTTCT 652
|||||||||||||| || |||||||||||||
Sbjct 1069 CTCTTCACAACTCTCTTCAGAAAGTGTTTCT 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24208052295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5