BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04450.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319261 jgi|Araly1|319261|fgenesh1_pm.C_scaffold_3002277 841 0.0
Ahg905784 jgi|Araly1|905784|Al_scaffold_0003_2912 584 5e-166
Ahg333087 jgi|Araly1|333087|fgenesh1_pm.C_scaffold_9000115 294 9e-79
> Ahg319261 jgi|Araly1|319261|fgenesh1_pm.C_scaffold_3002277
Length=870
Score = 841 bits (455), Expect = 0.0
Identities = 727/858 (85%), Gaps = 20/858 (2%)
Strand=Plus/Plus
Query 317 ATGGACAATGAAGATCAGGAGTCCCTTTTACTTCAAGGGGTTCCAGATAATTATGGAGGT 376
|||||| ||||| ||||||| ||| |||||||||| || |||||| |||| ||||||
Sbjct 1 ATGGACGTTGAAGCTCAGGAGACCCCTTTACTTCAATGGAAGCCAGATGATTACGGAGGT 60
Query 377 GTTAAGGTGAACTTGACAGAACCAATGACTATTGAGGATTTTGTCCCAAAGCTGAGAGCT 436
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 61 GTTAAGGTGAACTTGACAGAGCCAATGACTACTGAGGATTTTGTCCCAAAGCTGAGGGCT 120
Query 437 TCACTTGTGTATTGGAGCAATCAGGGGACGAAGGGGATATGGTTAAAGCTTGCCGATGGG 496
||||||||| ||||||| |||||||||| |||||| |||||||||||||| || ||||||
Sbjct 121 TCACTTGTGGATTGGAGGAATCAGGGGAAGAAGGGAATATGGTTAAAGCTAGCTGATGGG 180
Query 497 CTTGACAATCTTATTGCACCTGCAAAAGCAGAAGGGTTTGTGTGCCACCATGCCGAGAGG 556
||||| ||||||||||||||||| ||||| ||||||||| | ||||||||| |||||
Sbjct 181 CTTGAGAATCTTATTGCACCTGCGAAAGCGGAAGGGTTTAAATACCACCATGCTGAGAGT 240
Query 557 GAATACACCATGCTTACATCTTGGATCGCTGATGTT-C-CTAGTACTCTTCCTGCCAATG 614
|| ||| |||||| ||||||| || | || || | | | ||| ||||||| ||||
Sbjct 241 GATTACTTGATGCTTGTATCTTGGCTCTCAGA-CTTGCAC-AACACTATTCCTGCTAATG 298
Query 615 CGTCTCATCGTATT-GGAGTTGGTGCCTTTGTCCTAAACAAGAAGACCAAAGAGGTGCTT 673
| |||||||||||| ||| | | ||| |||||| ||||| || | ||| |||||||||
Sbjct 299 CTTCTCATCGTATTGGGA-TCGCTGCTTTTGTCTTAAAC-AGTA-ACC-GAGAGGTGCTC 354
Query 674 GTGGTCCAGGAGATTGATGGTCATTTCAAAGGTACAGGAGTGTGGAAACTGCCTACCGGT 733
|| ||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||
Sbjct 355 GTTGTCCAGGAGATTGGCGGTCCTTTCGATGGTACAGGAGTGTGGAAACTGCCTACCGGT 414
Query 734 GTTGTTAAAGAGGGTGAGAATATTTGGGAAGGAGCACTTAGGGAAGTGGAAGAAGAAACT 793
||| |||||||||| ||| | |||||| |||||| |||||||||||||||||||||
Sbjct 415 GTTATTAAAGAGGGAGAGGGTGTTTGGGCTGGAGCAGAAAGGGAAGTGGAAGAAGAAACT 474
Query 794 GGTATTAAGACAAAATTTGTAGAAGTCCTGGCTTTCAGGGAAAGCCACCAAGCATTCTTG 853
||||||||||| | |||| ||||||||| |||||||||||||||||| || |||||| |
Sbjct 475 GGTATTAAGACGACATTTAAAGAAGTCCTAGCTTTCAGGGAAAGCCACAAATCATTCTCG 534
Query 854 GAAATAA-AAA--CGGATATATTTTTCCTCTGTGAGTT-A----GAA-CCAACCACTTTT 904
|||| || ||| |||||||| | |||||||||||||| | ||| ||| |||||||
Sbjct 535 GAAAAAAGAAAGACGGATATAATGTTCCTCTGTGAGTTGAACATGAAACCAGGCACTTTT 594
Query 905 GAAATCAAGAAACAAGACTCTGAGATCTTA-GCTGCTAAGTGGATGCCAATTGAAGAATA 963
|||||||| ||| || | ||||||||| | ||||||||||||||||| ||||| |||||
Sbjct 595 GAAATCAATAAAGAAAAGACTGAGATCT-ACGCTGCTAAGTGGATGCCGATTGAGGAATA 653
Query 964 CGTAAACCAACCCTGGAACCAGAAGAAAGAACTGTTTAGGTTCATGGCGAACATCTGCTT 1023
||||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||
Sbjct 654 TGTAAACCAACCCTGGAACCAGGAGAAAGAGTTGTTCAGGTTCATGGCTAACATCTGCTT 713
Query 1024 GAAGAGATTGCAGGAGATGGAATACATGGGTTTCTCCAAAGTCCTTACTACGACTTCATC 1083
|||||||| ||||||||||||||| |||||||||| | |||| || || |||||| |
Sbjct 714 GAAGAGATCGCAGGAGATGGAATATGTGGGTTTCTCGACTGTCCGCACAACAACTTCAAC 773
Query 1084 TGGGAAAGAGAGCTATCTTTACTGCAACACCGATCACGCCAACCTCCTCAACGCAACGCG 1143
||| | ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 774 TGGTAGGGAGAGCTATCTTTACTGTAACACTGATCATGCCAACCTCCTCAACGCAACGCG 833
Query 1144 TGGCCTAGCCTCCACCTC 1161
||||| ||||||||||||
Sbjct 834 TGGCCCAGCCTCCACCTC 851
> Ahg905784 jgi|Araly1|905784|Al_scaffold_0003_2912
Length=1110
Score = 584 bits (316), Expect = 5e-166
Identities = 619/759 (82%), Gaps = 45/759 (6%)
Strand=Plus/Plus
Query 456 ATCAGGGGACGAAGGGGATATGGTTAAAGCTTGCCGATG-G-GC-TTGACAATCTTATTG 512
||||||||| ||||| || ||| |||||| |||| || | || || | | |||| |||
Sbjct 374 ATCAGGGGAAAAAGGGAATTTGGATAAAGC-TGCC-TTGTGAGCTTTTA-AGTCTTGTTG 430
Query 513 CAC-CTGCAA--AAGCAGAAGGGTTTGTGTGCCACCATGCCGAGAGGGAATACACCATGC 569
|| ||||| ||| | |||||||| | |||||||||||||| |||||| | | |
Sbjct 431 -ACATTGCAATTAAG-A-AAGGGTTTACATACCACCATGCCGAGAAGGAATATGCGGTTC 487
Query 570 TTACATCTTGGATCGCTGATGTT-CCTAGTACTCTTCCTGCCAATGCGTCTCATCGTATT 628
|||||||||||||| |||| || ||||| ||| ||||||||||||| ||||||||||||
Sbjct 488 TTACATCTTGGATCTCTGA-CTTGCCTAGCACTATTCCTGCCAATGCTTCTCATCGTATT 546
Query 629 -GGAGTTGGTGCCT-TTGTCCTAAACAAGAAGACCAAAGAGGTGCTTGTGGTCCAGGAGA 686
||| |||||| || |||| ||||||||| | | || ||||||||||||||| |||||||
Sbjct 547 GGGA-TTGGTG-CTCTTGTACTAAACAAG-A-A-CAGAGAGGTGCTTGTGGTTCAGGAGA 601
Query 687 TTGATGGTCATTTCAAAGGTACAGGAGTGTGGAAACTGCCTACCGGTGTTGTTAAAGAGG 746
|||||||| |||||||||||| ||| ||||||| || |||||||||||| || ||||||
Sbjct 602 TTGATGGTGTTTTCAAAGGTACCGGACTGTGGAAGCTTCCTACCGGTGTTATTCAAGAGG 661
Query 747 GTGAGAATATTTGGGAAGGAGCACTTAGGGAAGTGGAAGAAGAAACTGGTATTAAGACAA 806
||||| |||||||| |||||| |||||||||| ||||||||||||||||| ||||||
Sbjct 662 GTGAGGGTATTTGGGCTGGAGCAGTTAGGGAAGTAAAAGAAGAAACTGGTATTGAGACAA 721
Query 807 AATTTGTAGAAGTCCTGGCTTTCAGGGAAAGCCACCAAGCATTCTTGGAAATAAAAACGG 866
||||||| |||||| ||||||| ||||||| |||||| |||||||||||| ||||||||
Sbjct 722 AATTTGTTGAAGTCTTGGCTTTTGGGGAAAGTCACCAATCATTCTTGGAAAGAAAAACGG 781
Query 867 ATATAT-TTTTCCTCTGTGAGTTAGAACCAACCACTTTTGAAATCAAGAAACAAGACTCT 925
|||||| |||| || |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 782 ATATATATTTT-CTATGTGAGTTAGAACCAAGCACATTTGAAATCAAGAAACAAGACTCT 840
Query 926 GAGATCTTAGCTGCTAAGTGGATGCCAATTGAAGAATACGTAAACCAACCCTGGAACCAG 985
|||||| | | ||||||||||||||| ||||| ||||||||||| ||||| | | ||||
Sbjct 841 GAGATCCTGGATGCTAAGTGGATGCCGATTGAGGAATACGTAAAGCAACCTTTTATCCAG 900
Query 986 AAGA-A-AGAACTGTTTAGGTTCATGGCGAACATCTGCTTGAAGAGAT-TGCAGGAGATG 1042
|| | | |||||| | |||| |||||| ||||| ||||||||||| | | | || || |
Sbjct 901 AACAGAGAGAACT-TC-AGGTACATGGCTAACATTTGCTTGAAGAGGTCT-C-GG-GA-G 954
Query 1043 GAATACATGGGTTTCTCCAAAGTCCTTACTACGACTTCATCTGGGAAAGAGAGCTATCTT 1102
|| ||| | |||||||||| |||||||||| || || | |||| || ||||||||||||
Sbjct 955 GAGTACTTAGGTTTCTCCACTGTCCTTACTAAGAATTTAACTGGTAAGGAGAGCTATCTT 1014
Query 1103 TACTGCAACACCGATCACGCCAACCTCCTCAACGCAACGCGTGGCC-TAGCCTCCAC--C 1159
||||||||||| | | || | | ||||||||| || || || || | || || || |
Sbjct 1015 TACTGCAACACGG--C-CG--A-CTTCCTCAACGGAAAGCTTGACCAT-GCTTCTACGTC 1067
Query 1160 TCTGGTTGAAAAACCCTTCTTCAGAACGTGTTTATGTTT 1198
||| || | || | || |||||||| |||||| |||||
Sbjct 1068 TCTC-TTCACAA-CTCT-CTTCAGAAAGTGTTTCTGTTT 1103
> Ahg333087 jgi|Araly1|333087|fgenesh1_pm.C_scaffold_9000115
Length=849
Score = 294 bits (159), Expect = 9e-79
Identities = 569/760 (75%), Gaps = 56/760 (7%)
Strand=Plus/Plus
Query 424 AAAG-CTGAGAGCTTCACTTGT-GTATTGGAGCA-ATCAGGGGACGAAGGGGATATGGTT 480
|||| || || ||||| ||| | | ||||||| | | |||||| |||||| || ||| |
Sbjct 107 AAAGTCTTAGGGCTTCGCTT-TCGCATTGGAG-AGAAGAGGGGAAGAAGGGAATTTGGAT 164
Query 481 AAAGCTTGCCGATGGGCTTGAC-AATCTTATTGCA-CCTGCA-AAAGCAGAAGGGTTTGT 537
||||| |||| | || ||| | |||||| || | ||||| || ||||| |||
Sbjct 165 AAAGC-TGCCTCTTGGATTGGCTAATCTT-GTGGAGGCTGCAGTTAG-TGAAGGATTT-A 220
Query 538 G-TGCCACCATGCCGAGAGGGAATACACCATGCTTACATCTTGGATCGCTGATGTTCCTA 596
| | ||||| || ||| || ||| |||||| |||||||||| |||| |||
Sbjct 221 GATATCACCACGCGGAGCCTGAGTACTTGATGCTTGTATCTTGGATCTCTGAAACCCCT- 279
Query 597 G-TACTCTTCCTGCCAATGCGTCTCATCG-TATTGGAGTTGGTGCCTTT-GTCCTAAACA 653
| ||| | || |||||||| |||||| | | | || | ||||| |||| ||| | ||||
Sbjct 280 GATACGATCCCAGCCAATGCTTCTCAT-GTTGTAGGTGCTGGTG-CTTTGGTCATCAACA 337
Query 654 AGAAGACCAAAGAGGTGCTTGTGGTCCAGGAGATTGA-T-GGTCATTTCAAAGGTACAGG 711
| || || |||||||| || || |||||||||| || | ||| |||||||| || |
Sbjct 338 AAAATACTAAAGAGGTCCTCGTTGTCCAGGAGA-GGAGTGGGT-TTTTCAAAGCTA-AAA 394
Query 712 A-GTGTGGAAACTGCCTACCGGTGTTGTTAAAGAGGGTGAGAATATTTGGGA-AGGAGCA 769
| |||||||| |||||||| |||||| | || ||||| ||| |||| | ||| ||| |
Sbjct 395 ATGTGTGGAAGCTGCCTACTGGTGTTATCAACGAGGGCGAGGATATAT-GGACTGGAATA 453
Query 770 -CTTAGGGAAGTGGAAGAAGAAACTGGTATTAA-GACAAAATTTGTAGAAGTCCTGGCTT 827
| ||||||||||||||||||||||||||||| | || | ||||| ||||| ||||||
Sbjct 454 GC-TAGGGAAGTGGAAGAAGAAACTGGTATTATTG-CAGATTTTGTCGAAGTATTGGCTT 511
Query 828 TCAGGGAAAGCCACCAAGC-ATTCTTGGAAATA-AAAACGGATATATTTTTCCTCTGTGA 885
||||| |||||||| |||| || |||| ||| | ||||| ||||| |||||||| ||||
Sbjct 512 TCAGGCAAAGCCACAAAGCCAT-CTTGAAAA-AGAAAACAGATATGTTTTTCCTGTGTGT 569
Query 886 GTTA-GAACCAAC-CACTTTTGAAATCAA-GAAACAAGACTCTGAGATCTTAGCT-GCTA 941
||| | || | | ||| || || | ||| ||| | ||||||||||| || ||||
Sbjct 570 CTTAAGT-CCG-CGCTCTTACGATATTACTGAA-CAAAAATCTGAGATCTT-GCAAGCTA 625
Query 942 AGTGGATGCCAATTGAAGAATACGTAAACCAACCCTGGAACCAGAAGAAA-GA-ACTGTT 999
||||||||||||| |||| || ||| ||||||| |||||| |||| ||| || | ||||
Sbjct 626 AGTGGATGCCAATCCAAGAGTATGTAGACCAACCATGGAACAAGAA-AAACGAGA-TGTT 683
Query 1000 TAGGTTCATGGCGAACATCTGCTTGAAGA-GAT-TGCAGGAGATGGAATACATGGGTTTC 1057
| ||||||||| ||||||||| |||| | | || |||| | | ||||| |||| |||
Sbjct 684 CAAGTTCATGGCCAACATCTGCCAAAAGAAG-TGTG-AGGA-A-G-AATACTTGGGATTC 738
Query 1058 TCCAAAGT-CCTTACTACGACTTCATCTGGGAAAGAGAGCTATCTTTACTGCAACACCGA 1116
||| || || ||||| || |||||||| || ||||||| | | |||||||| | ||
Sbjct 739 GCCATTGTGCCA-ACTACCACATCATCTGGTAAGGAGAGCTTTATCTACTGCAATGCTGA 797
Query 1117 TCACGCCAACCTCCTCAACGCAACGCGTGGCCTAGCCTCC 1156
||| ||||| | ||| || |||||||||| || |||||||
Sbjct 798 TCATGCCAATCGCCTTAAAGCAACGCGTGACCAAGCCTCC 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5