BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04480.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480089 jgi|Araly1|480089|fgenesh2_kg.3__2790__AT2G04480.1 737 0.0
Ahg493638 jgi|Araly1|493638|fgenesh2_kg.7__3071__AT5G35870.1 78.7 6e-14
> Ahg480089 jgi|Araly1|480089|fgenesh2_kg.3__2790__AT2G04480.1
Length=786
Score = 737 bits (399), Expect = 0.0
Identities = 508/560 (91%), Gaps = 10/560 (2%)
Strand=Plus/Plus
Query 190 GTTGAAATGAATCCTGAGAATAACATAGAAGAAGAATACGTT-TTGATGAGTTTGGCTTC 248
||||||||||||| |||||| || ||||||||||| ||| || |||||||||||||||||
Sbjct 232 GTTGAAATGAATCTTGAGAAGAAAATAGAAGAAGAGTAC-TTCTTGATGAGTTTGGCTTC 290
Query 249 AATTTTGTTGAAGAGACCTTTTTCATGGGTCTCTCTCCTCGCCCCTCCACTTCTTCACAT 308
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 291 AATTTTGTTGAAGAGGCCTTTTTCATGGGTCTCTCTCCTCGCCCCTCCACTTCTTCATAT 350
Query 309 CCTTGGCATTCGCTT-CTTACATCTCCTCCTTACTTGTACTGCTTTGTTCTTCTCCTCTT 367
| ||||| |||| || |||||| ||||||||||||| | |||||||||||||||||||||
Sbjct 351 CTTTGGCCTTCG-TTCCTTACACCTCCTCCTTACTTCTGCTGCTTTGTTCTTCTCCTCTT 409
Query 368 TCTTCTTCCCAATCTCACTTCCTCATTCTTCAATACAATCATCAAAACAAGATCAAGATC 427
|||||||||||||||||| | ||||||||||| | ||| |||||||||||||||||||||
Sbjct 410 TCTTCTTCCCAATCTCACGTACTCATTCTTCACTCCAACCATCAAAACAAGATCAAGATC 469
Query 428 AAGAAGGACACTATATTGCCACCAAAGATATTACCGGGAAATCGGAGGAAAACCTGGAGA 487
||||| || ||||||||||||| ||||||||||||||||||| ||||| ||||| ||||
Sbjct 470 AAGAACGAGACTATATTGCCACTGAAGATATTACCGGGAAATCCGAGGATAACCTTGAGA 529
Query 488 AGACCAATGAAGAGGATGACGATGGCGCAAT-CCCGGATGATGAGAGCCTCATAGAGCTG 546
||||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||| ||
Sbjct 530 CTACCAATGAAGAGGATGATGATGGCGCAATACCC-GATGATGAGAGTCTCATAGAGTTG 588
Query 547 TCTTTACCGAGTGGTCACTACCTTGGTCACCACTACAATAGTAACAAGAACCATCTCTAT 606
|||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |
Sbjct 589 TCTTTACCGAGTGGTCACTATGTTGGTCACCACTACACTAGTAACAAGAACAATCTCTGT 648
Query 607 ATCCACAACAAAGTACAAGATTTCAGGCTCTTTGATCTATTGAA-TGAAATT-AACGATT 664
|||||||||| || ||||||||| ||||||||| ||||| || || | || || ||||
Sbjct 649 CTCCACAACAAGGTTCAAGATTTCCCGCTCTTTGACCTATT-AACTG-AGTTAAATGATT 706
Query 665 TTACCGAAGAAGATAATCTCATTGAAATCGATATCTCCATCGGATCCATTAAGTATTCAA 724
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TTATCGAAGAAGATAATCTCATTGAAATCGATATCTCCATCGGATCCATTAAGTATTCAA 766
Query 725 GGTTTGAGATCAAAGCTTGA 744
||||||||||||||||||||
Sbjct 767 GGTTTGAGATCAAAGCTTGA 786
Score = 176 bits (95), Expect = 2e-43
Identities = 106/111 (95%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 1 ATGGTGGCACATGGCTTACCAACTCTCTATGCCTTGGAGAGTGTACAAAGTTCAAAGCTC 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 ATGGTGGCACATGGCTAACCAACTCTCTATGCCTTGGAGAGTGTACAAAGTTCAAAGCTC 70
Query 61 AAGGGTTTTGTGACTTTGAAGTCTCCAAGAGAATCAGTTTCAGATGCTCAA 111
|||||||||| | ||||||||||||||||||||||| |||||||||| |||
Sbjct 71 AAGGGTTTTG-GCCTTTGAAGTCTCCAAGAGAATCAATTTCAGATGCCCAA 120
> Ahg493638 jgi|Araly1|493638|fgenesh2_kg.7__3071__AT5G35870.1
Length=588
Score = 78.7 bits (42), Expect = 6e-14
Identities = 101/129 (78%), Gaps = 6/129 (5%)
Strand=Plus/Plus
Query 259 AAGAGACCTTTTTCATGGGTCTCTCTCCTCGCCCCT-CCACTTCTTCACATCCTTGGCA- 316
|||||||| |||||||| | ||| | || | |||| || ||||||||||| | || |
Sbjct 121 AAGAGACCAGTTTCATGGTTATCTTTTCTTG-CCCTACCTCTTCTTCACATTGTAGG-AC 178
Query 317 TTCGCTTCTTACATCTCCTCCTTACTTGTA-CTGCTTTGTTCTTCTCCTCTTTCTTCTTC 375
|| | |||| ||| || |||| || | | |||||||||||||||||||||||||||||
Sbjct 179 TTGGGTTCTCACAAATCTTCCTAACCT-CAGCTGCTTTGTTCTTCTCCTCTTTCTTCTTC 237
Query 376 CCAATCTCA 384
|| |||||
Sbjct 238 CCTCTCTCA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5