BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04515.1
Length=842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480090 jgi|Araly1|480090|fgenesh2_kg.3__2791__AT2G04515.1 989 0.0
> Ahg480090 jgi|Araly1|480090|fgenesh2_kg.3__2791__AT2G04515.1
Length=778
Score = 989 bits (535), Expect = 0.0
Identities = 695/769 (90%), Gaps = 23/769 (3%)
Strand=Plus/Plus
Query 83 agatGGAATCTCAAAAACAAGAAAGAAGCGTGAAGGAGATGAAAATAGTCACTAAGATCA 142
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 23 AGATGGAATCTCGAAAACAAGAAAGAAGCGTGAAGGAGATGAAAGTAGTCACTAAGATCA 82
Query 143 TAGCATTTGCATCCATTTTCTC-ATT-TA-TACTATCTTACTCTTCCTTAATCTCTTCTC 199
||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 83 TAGCATTGGCATCCATTTTCTCTTTTATAGTACTATCTTACTCTTCCTTAATCTCTTCTC 142
Query 200 TTCAACAAAGACTCCATTTGCTTGCCATGTATAGCAATCTTGTGGACAAGAAGTACATGT 259
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 143 TTCAACAAAGACTCCATTTGCTTTCCATGTATAGCAACCTTGTGGACAAGAAGTACATGT 202
Query 260 TCTTGTTATGCAATGGGATTGTGGGCTTTATCTTGGGGAGTTTCCATGGGAATTCTGACT 319
||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| |
Sbjct 203 TCTTGTTATGCAATGGGATTGTGTGCTTTATCGTGGGGAGTTTCCGTGGGAATTCTGAAT 262
Query 320 CCCTTTCGCACGGTAAAGCCATTAACATCGTTGAACAAACCAAAGAAGT-AGGGATCAAA 378
|| |||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||
Sbjct 263 CCTTTTCGCACGGTAAAGCTTTTAACATCGTTGAACAAACGAAAGAAGTAAGGG-TCAAA 321
Query 379 GACTTAAAAGAAACAAAAGTCAATAAAGTAGTGGCATTACTTgaagaaag-taatgtttc 437
||| | | |||||||||||||| |||||||||||| ||||||||| ||| ||||||||
Sbjct 322 GACATGAGGGAAACAAAAGTCAAGAAAGTAGTGGCACTACTTGAAG-AAGAAAATGTTTC 380
Query 438 taaagaagaagaaggaagagttgttttatctagagaagaagaagaagaagTTGCATTGGT 497
||||||||||||||||||||||||||||| | || || | ||||||||||||||||||
Sbjct 381 TAAAGAAGAAGAAGGAAGAGTTGTTTTAT-T-TAG-AG--G-AGAAGAAGTTGCATTGGT 434
Query 498 TGTTAAGGAAGATGAGGGAATACTAGTACAAGACCTCTCAATCACTAGACTAGATGA-TC 556
||||||||||||||| |||||| |||||||||||||| | ||| |||| | ||| | |
Sbjct 435 TGTTAAGGAAGATGAAGGAATATTAGTACAAGACCTCGCTATCGTTAGAATCGAT-AGTT 493
Query 557 ATGATGATGACGATGCGATAAATGATAGTTTATTAAGTTCAGAAGATTTGAACAAGAAAT 616
|| |||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 494 ATCATGATGACGATGAGATTAACGATAGTTTATTAAGTTCGGAAGATTTGAACAAGAAAT 553
Query 617 GTGAGGATTTCATCAGGAAGATGAAGGCAGAGATTCGATACGGCAAGAGAAGTATATAAC 676
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 554 GTGAGGATTTCATCAGGAAGATGAAGGCAGAGATTCGATTCGGCAAGAGAAGCATATAA- 612
Query 677 TTTTTTGAGTTTTGTTA-ACA--AGTTAAACTGTCTTTAGTATTCATATTCGGCAGGAGA 733
|||| ||| |||| | | | ||||||||| ||||||||||||||||| |||||||||
Sbjct 613 TTTTATGACTTTT-T-AGAGTTTAGTTAAACTATCTTTAGTATTCATATTAGGCAGGAGA 670
Query 734 AGTATATAATTTTCTCTCTTTGGAC-AAGTAGATTCTGTATTTTTGGTGCCCACTTTTAT 792
|||||||||||||||||||| ||| || | |||||||||||||||||||||| ||||||
Sbjct 671 AGTATATAATTTTCTCTCTTACGACGAA-TGGATTCTGTATTTTTGGTGCCCAGTTTTAT 729
Query 793 GTATGTCATCCATATGAATCCATGCAACATAATGCTTTCTATATCAAGC 841
|||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 730 GTATGTGGTCCATATGAATCCATGCAACATAATGCTTTCTATGTCAAGC 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31146423189
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5