BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04520.1
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930770 jgi|Araly1|930770|scaffold_303227.1 765 0.0
Ahg947205 jgi|Araly1|947205|scaffold_703434.1 521 2e-147
> Ahg930770 jgi|Araly1|930770|scaffold_303227.1
Length=481
Score = 765 bits (414), Expect = 0.0
Identities = 448/465 (96%), Gaps = 0/465 (0%)
Strand=Plus/Plus
Query 164 GATACTATGCCgaagaacaagggaaagggaggaaagaacaggaagagaggaaagaacgaa 223
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 GATACCATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAA 75
Query 224 gcagatgacgagaagagagagCTTATATTCAAAGAAGATGGACAAGAATACGCACAAGTC 283
|| || ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 GCGGACGACGAGAAGCGTGAGCTTATATTCAAAGAAGATGGACAAGAATACGCACAAGTC 135
Query 284 CTTCGTATGCTTGGAAATGGAAGATGTGAAGCTATGTGTATCGATGGAACCAAGCGTCTT 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CTTCGTATGCTTGGAAATGGAAGATGTGAAGCTATGTGTATCGATGGAACCAAGCGTCTT 195
Query 344 TGCCATATCCGTGGTAAGATGCATAAGAAGGTTTGGATTGCAGCAGGTGATATTGTGCTT 403
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 196 TGCCATATCCGTGGTAAGATGCACAAGAAGGTTTGGATTGCAGCAGGTGACATTGTACTT 255
Query 404 GTTGGTTTGAGGGATTACCAAGATGACAAAGCGGATGTGATCCTTAAGTACATGTCTGAT 463
|||||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct 256 GTTGGTTTGAGGGATTACCAAGATGATAAAGCGGATGTGATTCTCAAGTATATGTCTGAT 315
Query 464 GAGGCTAGGCTTCTTAAGGCTTATGGTGAGCTTCCAGAGAATACTCGTCTTAATGAAGGA 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GAGGCTAGGCTTCTTAAGGCTTATGGTGAGCTTCCAGAGAATACTCGTCTTAATGAAGGA 375
Query 524 ATTGTTGGTGATCTTGAGgatgatgatgataataatgatgatgaCTATGTTGAGTTTGAG 583
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 376 ATTGTTGGTGATCTTGAAGATGATGATGATAATAATGGCGATGACTATGTTGAGTTTGAA 435
Query 584 GACGAAGATATCGATAGGATCTAAGGCTTTGTTTGtttttttttt 628
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 436 GACGAAGATATCGATAGGATCTAAGGCTTTGTTTGTGTTTTTTTT 480
> Ahg947205 jgi|Araly1|947205|scaffold_703434.1
Length=481
Score = 521 bits (282), Expect = 2e-147
Identities = 396/452 (88%), Gaps = 3/452 (1%)
Strand=Plus/Plus
Query 170 ATGCCgaagaacaagggaaagggaggaaagaacaggaagagaggaaagaacgaagcagat 229
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 24 ATGCCGAAGAACAAAGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCTGAT 83
Query 230 gacgagaagagagagCTTATATTCAAAGAAGATGGACAAGAATACGCACAAGTCCTTCGT 289
||||||||| | |||||||| |||||||||||||| ||||| || |||||||| ||||||
Sbjct 84 GACGAGAAGCGCGAGCTTATTTTCAAAGAAGATGGGCAAGAGTATGCACAAGTTCTTCGT 143
Query 290 ATGCTTGGAAATGGAAGATGTGAAGCTATGTGTATCGATGGAACCAAGCGTCTTTGCCAT 349
||||| || ||||| | ||||| | |||||| || || || |||||||||||||||
Sbjct 144 ATGCTCGGTAATGGCCGTTGTGATGTTATGTGCATTGACGGTGTTAAGCGTCTTTGCCAT 203
Query 350 ATCCGTGGTAAGATGCATAAGAAGGTTTGGATTGCAGCAGGTGATATTGTGCTTGTTGGT 409
||||||||||||||||| |||||||||||||||||||| ||||| || | |||||||||
Sbjct 204 ATCCGTGGTAAGATGCACAAGAAGGTTTGGATTGCAGCTGGTGACATCATACTTGTTGGT 263
Query 410 TTGAGGGATTACCAAGATGACAAAGCGGATGTGATCCTTAAGTACATGTCTGATGAGGCT 469
||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct 264 CTGAGGGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGTCTGATGAGGCT 323
Query 470 AGGCTTCTTAAGGCTTATGGTGAGCTTCCAGAGAATACTCGTCTTAATGAAGGAATTGTT 529
|||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 324 AGGCTTCTCAAGGCGTATGGTGAGCTTCCGGAGAACACTCGTCTTAATGAAGGTATTGTT 383
Query 530 GGTGATCTTGAGgatgatgatgataataatgatgatgaCTATGTTGAGTTTGAGGACGAA 589
||||||||||| || ||||| || ||| | |||||| || ||||||||||||||||
Sbjct 384 GGTGATCTTGATGAAGATGAAGAGAATGCGGGTGATGATTACATTGAGTTTGAGGACGAG 443
Query 590 GATATCGATAGGATCTAAGGCTTTGTTT-Gtt 620
||||| ||||||||||||| ||||||| |||
Sbjct 444 GATATTGATAGGATCTAAG--TTTGTTTTGTT 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30193350264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5