BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04530.1
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480092 jgi|Araly1|480092|fgenesh2_kg.3__2793__AT2G04530.1 1827 0.0
Ahg480093 jgi|Araly1|480093|fgenesh2_kg.3__2794__AT2G04540.1 63.9 3e-09
> Ahg480092 jgi|Araly1|480092|fgenesh2_kg.3__2793__AT2G04530.1
Length=1232
Score = 1827 bits (989), Expect = 0.0
Identities = 1161/1242 (93%), Gaps = 20/1242 (2%)
Strand=Plus/Plus
Query 16 AAAGGCCGTTCTTTGCATTTTCTATCG-------TTTCATGTCTGAGTGACAG-AGGAAA 67
||||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 1 AAAGGCCGTTCTTTGCATTTTCTATCGTTTCATCTTTCATGTCTGAGTGA-AGTAGGAAA 59
Query 68 CCCCAAAAACCTCCGTAAAACCTCACAAAAGAATGCAGCTTTCTTCTTCGTTTCCAATTT 127
||||||||||||| |||||| | | || || |||||||| | |||||||||||||||||
Sbjct 60 CCCCAAAAACCTCTGTAAAA-C-C-CAGAA-AATGCAGC--T-TTCTTCGTTTCCAATTT 112
Query 128 CACCTCCCAAAATCTTCCCTTCCACCAAACACCATAAACCTCCAGTGATTACTCACCAGC 187
||||| ||||||||||||||| |||||| ||||| ||||||||||||| ||||||||
Sbjct 113 CACCTTCCAAAATCTTCCCTTTCACCAAGTACCATGGCCCTCCAGTGATTATTCACCAGC 172
Query 188 TCGCCGCACAGATACAGAGCAACCGTAGAC-ATTTCGTGAGTCCCGTCAAAGTCTCTGGC 246
|||| ||||||||||||||| ||||||| | ||||||||||||| | |||||||||||||
Sbjct 173 TCGCTGCACAGATACAGAGCCACCGTAG-CAATTTCGTGAGTCCTGCCAAAGTCTCTGGC 231
Query 247 TATTTCTCATCGATTAGCCGAGCTATTGAGGAAGAAGAAGAGTATCGGAAAGCACGCGCT 306
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 232 TATTTCTCATCGATTAGCCGAGCAATTGAGGAAGAAGAAGAGTATCGGAAAGCACGCGCC 291
Query 307 GCAGTGAACCGTAAAGGTGTCGAATTGGAGAGTTATGCAATTGAAGGGATCTCTGTAGGT 366
|| || ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 292 GCCGTTAACCGAAAAGGCGTCGAATTGGAGAGTTATGCAATTGAGGGGATTTCTGTAGGT 351
Query 367 GGGCACGAGACTTGTGTTATCGTCCCTGAGCTCAAATGTGTCTTTGATATTGGGAGGTGC 426
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 352 GGGCATGAGACTTGTGTTATCGTCCCTGAGCTCAAATGTGTGTTTGATATTGGGAGGTGC 411
Query 427 CCTTCTCGTGCTATTCAGCAGAAGTTTCTTTTTATCACTCATGCCCATCTTGACCATATC 486
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 412 CCTTCTCGTGCTATTCAGCAGAAGTTTCTTTTTATCACTCATGCTCATCTTGATCATATT 471
Query 487 GGAGGGCTTCCAATGTATGTAGCGAGCCGTGGTTTATACAATCTTGAGCCACCGAAAATA 546
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 472 GGAGGGCTACCGATGTATGTAGCGAGTCGTGGTTTATACAATCTTGAGCCACCGAAAATA 531
Query 547 TTTGTGCCACCATCTATTAAAGAAGATGTTGAGAAACTTCTTGAGATTCACAGGACTATG 606
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TTCGTGCCACCATCTATTAAAGAAGATGTTGAGAAACTTCTTGAGATTCACAGGACTATG 591
Query 607 GGTCAAGTAGAGTTGAATGTAGAA-TTGATACCACTTGCTGTAGGTGAAACATATGAGTT 665
|||||||||||| ||||||||||| || || ||||| | |||||||||||||||||||||
Sbjct 592 GGTCAAGTAGAGCTGAATGTAGAACTT-ATTCCACTCGATGTAGGTGAAACATATGAGTT 650
Query 666 GCGCAATGACATTGTTGTTAGACCATTTGCAACTCACCATGTTATACCAAGTCAGGGTTA 725
||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 651 GCGGAATGACATTGTTGTTAGACCGTTTGCAACTCACCACGTTATACCGAGTCAGGGTTA 710
Query 726 TGTCATCTATTCGGTCAGGAAGAAGTTGCAGAAGCAGTATGCTCACCTCAAAGGAAAACA 785
|||||| || ||||| ||||||||| |||||||||| ||||||||||||||||| |||||
Sbjct 711 TGTCATTTACTCGGTGAGGAAGAAGCTGCAGAAGCAATATGCTCACCTCAAAGGCAAACA 770
Query 786 GATAGAAAAGATTAAAAAGTCTGGCGTCGAGATTACGGACACGATATTATCCCCCGAGAT 845
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 771 GATAGAAAAGATTAAAAAGTCTGGCGTCGAGATTACTGACACGATATTATCCCCTGAGAT 830
Query 846 AGCCTTCACTGGAGATACAACTTCAGAGTATATGCTTGACCCTCGTAATGCTGATGCGTT 905
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
Sbjct 831 AGCCTTCACTGGAGATACAACTGCAGAGTATATGCTTGACCCTCGTAACGCTGATGCACT 890
Query 906 GAGGGCAAAAGTTCTTATAACTGAGGCAACTTTCTTGGATGAAAGTTTTAGCACTGAGCA 965
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 891 GAGGGCAAAAGTTCTTATAACCGAGGCAACTTTCTTGGATGAAAGTTTTAGCACTGAGCA 950
Query 966 TGCGCAAGCACTCGGTCATACTCATATATCTCAGATTATTGAGAATGCAAAGTGGATCCG 1025
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TGCGCAGGCACTCGGTCACACTCATATATCTCAGATTATTGAGAATGCAAAGTGGATCCG 1010
Query 1026 GAGCAAAACTGTATTATTGACGCATTTCTCATCACGTTACCATGTAGAGGAAATCCGTGA 1085
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1011 AAGCAAAACTGTATTATTGACGCATTTCTCATCACGTTACCATGTAGAGGAAATCCGCGA 1070
Query 1086 AGCTGTGCTTAAGTTGCAATCGAAAGTATCCGCAAAAGTCATTCCTCTTACAGAAGGTTT 1145
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1071 AGCTGTGCTTAAGTTGCAATCAAAAGTATCCGCAAAAGTCATTCCTCTTACAGAAGGTTT 1130
Query 1146 CAGGTCAAGATATTCTTAAAAGAGCTTAAAGGATATTGCAAGCAAAAGTAGGCATTTGAA 1205
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1131 CAGGTCAAGATATTCTTAAAAGAGCTCGAAGGATATTGCAAGCAAAAGTAGGTATTTGAA 1190
Query 1206 ACATCTTTGTCTGTAATTTCATAGGGAACTCGCTAATGTAAG 1247
|||||||||||||||||||| |||||||||||||||||||||
Sbjct 1191 ACATCTTTGTCTGTAATTTCTTAGGGAACTCGCTAATGTAAG 1232
> Ahg480093 jgi|Araly1|480093|fgenesh2_kg.3__2794__AT2G04540.1
Length=1515
Score = 63.9 bits (34), Expect = 3e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Minus
Query 1210 CTTTGTCTGTAATTTCATAGGGAACTCGCTAATGTAA 1246
|||| ||||||||||||||||||||||||||||||||
Sbjct 1515 CTTTATCTGTAATTTCATAGGGAACTCGCTAATGTAA 1479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48377981673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5