BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04550.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930774 jgi|Araly1|930774|scaffold_303231.1 1299 0.0
> Ahg930774 jgi|Araly1|930774|scaffold_303231.1
Length=814
Score = 1299 bits (703), Expect = 0.0
Identities = 761/790 (96%), Gaps = 0/790 (0%)
Strand=Plus/Plus
Query 176 ATTATGAGGAAGAGAGAAAGAGAGAACCCTTGTTCGATTTGTGGGCATTACCATAAGTAC 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 ATTATGAGGAAGAGAGAAAGAGAGAACCCTTGTTCGATTTGTGGGCATTACCATAAGTAC 77
Query 236 GAGGAAGGAGAAGTATGTGGAGTCTGTGGTCACTGTATGCCTGTTTCTTCCGATACGGTG 295
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 78 GAGGAAGGTGAAGTATGTGGAGTCTGTGGTCACTGTATGCCTGTTTCTTCCGATACAGTG 137
Query 296 GCGCCGCAACAAGTCCACGTCAGTGCTTTTCCGTCGGAGATTCTCCCTGAGTTTCTTTAC 355
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GCGGCGCAACAAGTCCACGTCAGTGCTTTTCCGTCGGAGATTCTCCCTGAGTTTCTTTAC 197
Query 356 CTCGGTAGTTACGACAACGCTTCTCGCTCTGAGCTTCTTAAGACTCAAGGAATCTCTCGT 415
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 198 CTCGGTAGTTACGACAACGCTTCTCGCTCTGAGCTTCTTAAGACTCAGGGGATTTCTCGT 257
Query 416 GTTCTTAATACGGTTCCTATGTGCCAGAATCTCTACAGGAATTCATTCACTTATCATGGT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 GTTCTTAATACGGTTCCTATGTGCCAGAATCTCTACAGGAATTCATTCACTTATCATGGT 317
Query 476 CTTGATAATGAAAAAGTTTTACAGTTTGATGATGCTATTAAGTTCTTAGACCAATGTGAG 535
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 318 CTTGATAATGAAAAAGTTTTACAGTTTGATGATGCTATCAAGTTTTTAGACCAATGTGAG 377
Query 536 AAGGACAAGGCACGTGTTCTTGTGCATTGCATGTCTGGGAAAAGTAGATCACCAGCGGTT 595
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 378 AAGGACAAGGCACGTGTTCTTGTGCATTGTATGTCTGGGAAAAGTAGATCACCGGCGGTT 437
Query 596 GTTGTAGCGTACTTGATGAAACGAAAAGGGTGGAGACTCGCTGAGAGTCATCAGTGGGTT 655
||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 438 GTTATAGCGTACTTGATGAAGCGTAAAGGGTGGAGACTCGCTGAGAGTCATCAGTGGGTT 497
Query 656 AAACAACGGAGACCAAGCACTGACATAAGTCCAGAGTTTTACCAACAACTGCAGGAGTTT 715
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 498 AAACAACGGAGACCAAGTACAGACATAAGTCCAGAGTTTTACCAACAACTGCAGGAGTTT 557
Query 716 GAGCAGGGGATATTCGGATCTGAGATGATGTCGGCGATGAATATTAATGATGCTCCAACG 775
||||| |||||||||||||| |||||| |||||||||||||| || |||||||||||
Sbjct 558 GAGCACTCGATATTCGGATCTGGGATGATTTCGGCGATGAATATCAACGATGCTCCAACA 617
Query 776 TTTGGGTTTGGTTTCCCTAAGATTGATAATCAAGCACAAGCTCCTGTGTTCAACAATGCT 835
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 618 TTTGGGTTTGGTTTCCCTAAGATTGATAATCAAGCACAAGCACCTGTGTTCAACAATGCT 677
Query 836 CCTACTTCTTCTATATTTTCATCTCCTGCTTCAAGTATCCCTCCTCAGGAGTTCACTTTT 895
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 678 CCTACTTCTTCTATATTTTCATCTCCTGCTTCAAGTATCCCTCCTCAAGAGTTCACTTTT 737
Query 896 GGAGCAACTCCACCAAAGCCAACAACTGGTGGTGATATTGCAATGGATGGCTCTTAGAAC 955
|||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||
Sbjct 738 GGAGCAACTCCACCAAAGCCAACAACCGGTGGTGATATCGCCATGGATGGCTCCTAGAAC 797
Query 956 CAGATAATCA 965
||||||||||
Sbjct 798 CAGATAATCA 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5