BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04560.1
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480096 jgi|Araly1|480096|fgenesh2_kg.3__2797__AT2G04560.1 2132 0.0
Ahg919034 jgi|Araly1|919034|scaffold_100315.1 311 1e-83
Ahg918722 jgi|Araly1|918722|scaffold_100003.1 311 1e-83
Ahg933741 jgi|Araly1|933741|scaffold_401729.1 281 8e-75
> Ahg480096 jgi|Araly1|480096|fgenesh2_kg.3__2797__AT2G04560.1
Length=1383
Score = 2132 bits (1154), Expect = 0.0
Identities = 1319/1397 (94%), Gaps = 17/1397 (1%)
Strand=Plus/Plus
Query 4 ATGTTTCAGATTACAAAGAGCAAACTTCGTTTCCCTCTCTCAACATTCACTAAGAGATAC 63
|||||||||||| |||||| ||||||| ||||||| |||||||||||||| || ||||||
Sbjct 1 ATGTTTCAGATTCCAAAGACCAAACTTTGTTTCCCACTCTCAACATTCACCAAAAGATAC 60
Query 64 TCATCATTTCAAGCTGCTAAATCGGTGATTGACAAGGCTGCAATCGATGGGGAGCTCAGA 123
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 61 TCATCATTTCAAGCTACTAAATCGGTGATCGACAAGGCTGCAATCGATGGGGAGCTGAGA 120
Query 124 GTTTTCATCGTCTCCGGCGAAGTTTCCGGCGATAACATCGGTTCTCGTCTTATGTCCTCG 183
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 121 GTTTTCATTGTCTCCGGCGAAGTTTCCGGCGATAACATTGGCTCTCGTCTTATGTCCTCG 180
Query 184 CTTAAAAAGCTCTCTCCTTTACCCATCCGTTTCAATGGAGTTGGAGGATCCTTGATGTGC 243
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 181 CTTAAAAAGCTCTCTCCTTTACCCCTTCGTTTCAATGGAGTTGGAGGATCCTTGATGTGC 240
Query 244 AAGAAAGGATTGAATTCGTTGTTTCCAATGGAGGATTTGGCTGTAATGGGTGTATGGGAG 303
||| |||| |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 241 AAGCAAGGGTTGAATTCGTTGTTTCCAATGGAGGATTTGGCTGTAATGGGTTTGTGGGAG 300
Query 304 CTTTTGCCACATTTGTATAAATTCCGTGTGAAGTTGAAGGAGACTATTGATGCTGCGGTT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTTTGCCACATTTGTATAAATTCCGTGTGAAGTTGAAGGAGACTATTGATGCTGCGGTT 360
Query 364 AAGTTTAAGCCACATGTTGTTGTGACTGTTGATTCAAAGGGCTTCTCTTTCCGTTTACTT 423
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 361 AAGTTTAAGCCACACATTGTTGTGACTGTTGATTCAAAGGGCTTCTCTTTTCGTCTACTT 420
Query 424 AAGGAGTTACGAGCTAGATACAAGCAGCAGCGGTTGGAAAATTGTTCTGTGCATTTTCAC 483
||||||||||||||||||||||| | ||||||||||||||||||| | ||||||||||||
Sbjct 421 AAGGAGTTACGAGCTAGATACAATCGGCAGCGGTTGGAAAATTGTCCAGTGCATTTTCAC 480
Query 484 TATGTCGCACCGTCGTTCTGGGCTTGGAAAGGAGGAGAGTCAAGACTTGGAGGTCTGTCT 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATGTCGCACCGTCGTTCTGGGCTTGGAAAGGAGGAGAGTCAAGACTTGGAGGTCTGTCT 540
Query 544 GAATTCGTTGATCATCTTTTCTGCATTCTTCCGAACGAGGAAAGGGTTTGTAGGGAGCAT 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 GAATTCGTTGATCATCTTTTCTGCATTCTTCCGAACGAGGAAAGGGTTTGTAGGGAACAT 600
Query 604 GGGGTTGAAGCAACGTTTGTTGGACATCCTGTTCTTGAGGATGCTTCTGAGTTCGACCTT 663
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 601 GGGGTTGAAGCAACCTTTGTTGGACATCCTGTTCTTGAGGATGCTTCTGAGTT----C-- 654
Query 664 GTGAGAAGGTGCAAGCCTCAGGAACTGAAACTTGAAGGCTTGAGTTTTAGCGAACACTCA 723
|| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 -----AA--T-C-TTCCTCAGGAACTGAAACTTGAAGGCTTGAGTTTTAGCGAACACTCA 705
Query 724 ATACCTTCTGACTCCACTGTCATTTCGGTTCTACCGGGGAGCAGATTACAAGAAGTTGAA 783
|||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||||
Sbjct 706 ATACCTTCTGACTCCACTATCATTTCGGTGCTACCAGGGAGCAGATTACAAGAAGCTGAA 765
Query 784 AGAATGCTACCCATATTTTCCAAAGCAATGAAGCTACTCAAAGATCCGTTTCCAAAACTA 843
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 766 AGAATGCTACCCATATTTTGTAAAGCAATGAAGCTACTCAAAGACCCGTTTCCAAAACTA 825
Query 844 GTAACGCTTATCCACGTCGCATCCAATAATCAAGTTGATCATTACATTGGAGAAT-CCTT 902
|||||||| ||||| || |||||||||| |||||||||||||||||||||||||| ||||
Sbjct 826 GTAACGCTCATCCATGTTGCATCCAATAGTCAAGTTGATCATTACATTGGAGAATCCCTT 885
Query 903 CAGTGAGTGGCCAGTTCCAGCAATACTAGTCCCTAGTGGATCCACTCAGCTTAAATATGA 962
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 886 -GGTGGGTGGCCAGTTCCAGCAATTTTAGTCCCTAGTGGATCCACTCAGCTTAAATATGA 944
Query 963 TGCCTTTGGCGCGAGTCAGGCTGCATTATGCACTTCAGGAACAGTTGCTGTTGAGTTGCA 1022
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TGCCTTTGGCGTGAGTCAGGCTGCATTATGCACTTCAGGAACAGTTGCTGTTGAGTTGCA 1004
Query 1023 GCTTGCTCATCTACCTTCCCTTGTTGCTTACCGAGCACATTTTCTAACAGAGCTATTAAT 1082
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1005 GCTTGCTCGTCTACCTTCTCTTGTTGCTTACCGAGCACATTTTCTAACAGAGCTAATAAT 1064
Query 1083 CCGTTACAAAGCCAAGATACCTTATATTTCTCTCCCAAACATTCTCCTAGACTCCCCAAT 1142
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1065 CCGTTACAAAGCCAAGATACCTTATATTTCTCTTCCAAACATTCTCCTAGACTCCCCAAT 1124
Query 1143 CATTCCTGAAGCTTTGTTTCAAGCTTGTAACCCTTCAAATCTCGCATCGATACTAGAGAG 1202
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1125 CATTCCTGAAGCTTTGTTTCAAGCTTGCAACCCTTCAAATCTCGCCCCGATACTAGAGAG 1184
Query 1203 ACTACTCTTGGATGAAAAGATGAGAGAAAGACAAGTTGTTGGTGCTGAGAAGTTGATACA 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACTACTCTTGGATGAAAAGATGAGAGAAAGACAAGTTGTTGGTGCTGAGAAGTTGATACA 1244
Query 1263 GCTCTTGCATCCGTCAGAAAGCAGAATGGGCAACTCAATTCATTGCACTGGTTTGGAATC 1322
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1245 GCTCTTGCATCCGTCAGAAAGCAGAATGGGCAACTCAATTCATTGCCCTGGTTTGGAATC 1304
Query 1323 TCATCGATATACGCCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGCCAGGCGTTA 1382
|||||||||||| ||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1305 TCATCGATATACACCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGTCAAGCACTA 1364
Query 1383 AAAACTATCGTGAGTCA 1399
|||||| |||||| |||
Sbjct 1365 AAAACTCTCGTGAATCA 1381
> Ahg919034 jgi|Araly1|919034|scaffold_100315.1
Length=202
Score = 311 bits (168), Expect = 1e-83
Identities = 189/199 (95%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 1202 GACTACTCTTGGATGAAAAGATGAGAGAAAGACAAGTTGTTGGTGCTGAGAAGTTGATAC 1261
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GACTACTCTTGGATGAAAAGATGAGAGAAAGACAAGTTGTTGGTGCCGAGAAGTTGATAC 60
Query 1262 AGCTCTTGCATCCGTCAGAA-AGCAGAATGGGCAACTCAATTCATTGCACTGGTTTGGAA 1320
|||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 61 AGCTCTTGCATCCGTCAGAAGA-CAGAATGGGCAACTCCATTCATTGCACTGGTTTGGAA 119
Query 1321 TCTCATCGATATACGCCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGCCAGGCGT 1380
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 120 TCTCATCGATATACACCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGTCAAGCAC 179
Query 1381 TAAAAACTATCGTGAGTCA 1399
|||||||| ||||||||||
Sbjct 180 TAAAAACTCTCGTGAGTCA 198
> Ahg918722 jgi|Araly1|918722|scaffold_100003.1
Length=202
Score = 311 bits (168), Expect = 1e-83
Identities = 189/199 (95%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 1202 GACTACTCTTGGATGAAAAGATGAGAGAAAGACAAGTTGTTGGTGCTGAGAAGTTGATAC 1261
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GACTACTCTTGGATGAAAAGATGAGAGAAAGACAAGTTGTTGGTGCCGAGAAGTTGATAC 60
Query 1262 AGCTCTTGCATCCGTCAGAA-AGCAGAATGGGCAACTCAATTCATTGCACTGGTTTGGAA 1320
|||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 61 AGCTCTTGCATCCGTCAGAAGA-CAGAATGGGCAACTCCATTCATTGCACTGGTTTGGAA 119
Query 1321 TCTCATCGATATACGCCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGCCAGGCGT 1380
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 120 TCTCATCGATATACACCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGTCAAGCAC 179
Query 1381 TAAAAACTATCGTGAGTCA 1399
|||||||| ||||||||||
Sbjct 180 TAAAAACTCTCGTGAGTCA 198
> Ahg933741 jgi|Araly1|933741|scaffold_401729.1
Length=204
Score = 281 bits (152), Expect = 8e-75
Identities = 183/198 (92%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 1203 ACTACTCTTGGATGAAAAGATGAGAGAAAGACAAGTTGTTGGTGCTGAGAAGTTGATACA 1262
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 4 ACTACTCTTGGATGAAAAGATGAGAAAAAGACAAGTTGTTGGTGCCGAGAAGTTGATACA 63
Query 1263 GCTCTTGCATCCGTCAGAAAG-CAGAATGGGCAACTCAATTCATTGCACTGGTTTGGAAT 1321
||| ||||||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct 64 GCTATTGCATCCGTCAG-AAGACAGAATGGGAAACTCCATTCATTGCACTGGTTTGGAAT 122
Query 1322 CTCATCGATATACGCCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGCCAGGCGTT 1381
|||||| |||||| ||||||||||||||||||||||||||||||||||||| || || |
Sbjct 123 CTCATCTATATACACCAAGCATTTTAGCAGCTTCGACTATTCTTAGTTATGTCAAGCACT 182
Query 1382 AAAAACTATCGTGAGTCA 1399
||||||| |||||| |||
Sbjct 183 AAAAACTCTCGTGAATCA 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53021621040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5