BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04570.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930777 jgi|Araly1|930777|scaffold_303234.1 1748 0.0
> Ahg930777 jgi|Araly1|930777|scaffold_303234.1
Length=1093
Score = 1748 bits (946), Expect = 0.0
Identities = 1048/1097 (96%), Gaps = 7/1097 (1%)
Strand=Plus/Plus
Query 54 ATAACCACAAAAACAAACACTATGGGACACCTCAAAAGTCTCTTCACAATTCTTTTCCTA 113
|||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATAACCAC-AAAATAAACACTATGGGACAACTCAAAAGTCTCTTCACAATTCTTTTCCTA 59
Query 114 ATAGCTATGTCT-TCAACCGTAACATTTGCCGGTAAAATACCCGCGATCATCGTGTTTGG 172
|||||||||| | || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 60 ATAGCTATGT-TGCCAGCCGTAACATTTGCCGGTAAAATACCGGCGATCATCGTGTTTGG 118
Query 173 CGACTCTTCCGTTGATGCCGGGAACAACAACTATATCCCAACTGTTGCTAGAAGCAACTT 232
||||||||| ||||| || ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 119 CGACTCTTCGGTTGACGCTGGGAACAACAATTATATCCCAACTGTTGCGAGAAGTAACTT 178
Query 233 TGAGCCATATGGACGGGACTTTGTTGGTGGAAAGCCGACCGGACGGTTTTGTAACGGAAA 292
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 179 CGAGCCATATGGACGGGACTTTGTTGGTGGAAAGCCGACCGGGCGGTTTTGTAACGGAAA 238
Query 293 GATTGCGACGGATTTTATGTCCGAAGCCTTAGGGCTTAAACCAATCATTCCGGCGTACTT 352
|||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 239 GATTGCAACGGATTTTATGTCCGAAGCCTTAGGGCTTAAACCAATAATTCCAGCATACTT 298
Query 353 GGATCCTTCTTATAACATTTCGGATTTTGCAACAGGTGTTACCTTTGCTTCTGCTGCCAC 412
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 299 GGATCCTTCTTATAACATTTCAGATTTTGCAACAGGTGTCACCTTTGCTTCCGCTGCCAC 358
Query 413 TGGCTATGACAACGCCACTTCTGATGTTCTGTCGGTACTACCTCTATGGAAACAACTCGA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGCTATGACAACGCCACTTCTGATGTTCTGTCGGTACTACCTCTATGGAAACAACTCGA 418
Query 473 ATACTACAAAGAATACCAAACAAAACTTAAAGCATACCAAGGAAAAGACAGAGGCACAGA 532
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 419 ATACTACAAAGAATACCAAACAAAACTTAAAGCATACCAAGGAAAAGAAAGAGCCACAGA 478
Query 533 GACTATAGA-AAGCTCTCTCTACCTCATAAGCATAGGGACCAACGATTTCCTCGAGAATT 591
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GACTATAGACAA-CTCTCTCTACCTCATAAGCATAGGGACCAACGATTTCCTCGAGAATT 537
Query 592 ACTTTGCCTTTCCGGGCCGTTCTTCGCAATATTCCGTCAGTCTTTACCAAGATTTTCTAG 651
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 538 ACTTTGCCTTTCCAGGCCGTTCTTCGCAATACTCGGTCAGTCTTTACCAAGATTTTCTAG 597
Query 652 CCGGAATCGCGAAAGAATTTGTGAAGAAGTTGCATGGACTTGGTGCTA-GAAAGATCTCA 710
|||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 598 CCGGAATCGCGAAAGACTTTGTGAAGAAGTTGCATGGACTTGGTGCAAAGAA-GATCTCA 656
Query 711 CTAGGTGGGTTACCTCCAATGGGATGCATGCCTTTAGAGAGAGCCACCAACATTGGCACT 770
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTAGGTGGATTGCCTCCAATGGGATGCATGCCTTTAGAGAGAGCCACCAACATTGGCACA 716
Query 771 GGAGGTGAGTGCGTAGGACGGTACAACGACATAGCCGTCCAGTTCAACAGCAAGCTTGAT 830
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 GGAGGTGAGTGCGTTGGACGGTACAACGACATAGCGGTCCAGTTCAACAGCAAGCTTGAG 776
Query 831 AAGATGGTTGAGAAGCTGAGCAAAGAGCTCCCTGGTTCCAACCTCGTTTTCTCAAATCCC 890
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 777 AAGATGGTTGAGAAGCTGAGCAAAGAGCTTCCTGGTTCCACCCTCGTTTTCTCAAATCCC 836
Query 891 TATGAGCCATTTATGCGGATCATCAAGAACCCTTCCTCCTTTGGGTTCGAGGTGGTGGGA 950
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 837 TATGAACCATTTATGCGGATCATCAAGAACCCTTCCTCTTTTGGGTTCGAGGTGGTGGGA 896
Query 951 GCGGCATGTTGCGCGACAGGGATGTTCGAGATGGGATATGGTTGTCAAAGGAATAACCCA 1010
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 897 GCGGCATGTTGCGCAACAGGGATGTTCGAGATGGGATATGGTTGCCAAAGGAATAACCCA 956
Query 1011 TTCACATGTACAAACGCAGACAAGTATGTGTTTTGGGACTCATTTCACCCAACACAGAAG 1070
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTCACATGTACCAACGCAGACAAGTATGTGTTTTGGGACTCATTTCACCCAACACAGAAG 1016
Query 1071 ACTAATCACATCATGGCCAATGCTCTCATGAACAGCACATTCCCTCACTTCCTCTAAATT 1130
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 ACTAATCACATCATGGCCAATGCTCTCATGAACAGCACATTCCCTCACTTCCTCTAAATG 1076
Query 1131 ATTTTTATGTTTGTGTG 1147
||||||||||||||||
Sbjct 1077 GTTTTTATGTTTGTGTG 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5