BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04620.1 Length=2397 Score E Sequences producing significant alignments: (Bits) Value Ahg930782 jgi|Araly1|930782|scaffold_303239.1 1943 0.0 Ahg931233 jgi|Araly1|931233|scaffold_303690.1 320 3e-86 > Ahg930782 jgi|Araly1|930782|scaffold_303239.1 Length=1784 Score = 1943 bits (1052), Expect = 0.0 Identities = 1168/1226 (95%), Gaps = 0/1226 (0%) Strand=Plus/Plus Query 485 GTTACTGTGGTGCTGCTGCTATGATCTTAGCTGAACTCTCTGGCACAGTTTCAGCCAGAG 544 ||||||||||||||||||||||||| ||||||||||||||||| || || ||||| |||| Sbjct 1 GTTACTGTGGTGCTGCTGCTATGATATTAGCTGAACTCTCTGGTACTGTCTCAGCTAGAG 60 Query 545 TCTTGTTTAGTGATACTGGTGGAATTGGAGTTAGATCATCTAAGGTTCGTGGGTTTTGCG 604 |||||| | |||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTTGTCTGGTGATAATAGTGGAATTGGAGTTAGATCATCTAAGGTTCGTGGGTTTTGCG 120 Query 605 TTTTGTTTGCTGGGTTGTTGTTGTTATCAATCAGCTGGGATCGTGTTGATTGTTTCCCGT 664 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 121 TTTTGTTTGCTGGGTTGTTGTTGTTATCTATCAGCTGGGATCGTGTTGATTGTTTCCCTT 180 Query 665 TTTCATCATCTGTTGAAAGTTGGGGTTTTTGGATTTACCCTAAAGAGAATTGCTTGAGGA 724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTTCATCATCTGTTGAAAGTTGGGGTTTTTGGATTTACCCTAAAGAGAATTGCTTGAGGA 240 Query 725 TTTGGCCTCTGTTGCTTCCGTTTCTATCTGGTTTCTTAGGTTGTTATGAGAAAGTTTCTG 784 |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 241 TTTGGCCTTTGTTGCTTCCGTTTCTATCTGGGTTCTTGGGTTGTTATGAGAAAGTTTCTT 300 Query 785 TGAATTGGAATGAGATCAAACAGTTAGATCAGAAACGAGTTCGATTACTGTCTTTGTTTC 844 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TGAATTGGAATGAGATCAAACAGTTAGATCAGAAACGAGTTCGATTACTGTCTTTGTTTT 360 Query 845 TAACCACTGTGTTGTTGTTCCCACTTGCTATTTGGAGTTTCTTCTTCTCTGGTAGTGGTG 904 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 361 TAACCACTTTGTTGTTGTTCCCACTTGCTATTTGGAGTTTCTTGTTCTCTGGTAGTGGTG 420 Query 905 ATGATAGTGTCTCTTTTGGGAATTTAGGTTGGCCTTTAGCTAACACTGTTGTATTTGGAG 964 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ATGATGGTGTCTCTTTTGGGAATTTAGGTTGGCCTTTAGCTAACACTGTTGTATTTGGAG 480 Query 965 TGTTGTTGAGTGAGAATTATAATGATGATAAGTTTTCAAGCTCGAAGAAGAAGGACTCAG 1024 | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| Sbjct 481 TATTGTTGAGTGAGAATTATAATGACGATAAGTTTTCGAGCTCGAAGAAGAAGGATTCAG 540 Query 1025 AGAGGGAGTTTCTTGTAACGTTTCTATGTACTATAGTATTGGAACTCTTCTATTTTCCTG 1084 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 541 TGAGGGAGTTTCTTGTAACGTTTCTATGTACTATTGTATTGGAACTCTTCTATTTTCCTG 600 Query 1085 AGCTATCTCTTTGGGGATTGTTGCTTTGTGGTTTGTTGCTTTACATTGCTGTTAGAGAGT 1144 || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 601 AGTTATCTCTTTGGGGATTGTTGCTTTGTGGTTTGTTGCTTTATGTTGCTGTTAGAGAGT 660 Query 1145 TGGAGTCTGTGTATTCAGATTATCAAGAGATTGGTATGGAATCGCCTGAGTCGTTTTCCA 1204 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 661 TGGACTCTGTGTATTCAGATTATCAAGAGATTGGGATGGAATCGCCTGAGTCGTTTTCAA 720 Query 1205 CTATGTTTATGAAGCCTATCCGTCACATTTTGAGCGAGAAGAAATCGAGGAAGATTGCGT 1264 ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 721 CTATGTTTATGAAGCCTCTACGCCACATTTTGAGCGAGAAGAAATCGAGGAAGATTGCGT 780 Query 1265 TGTTTCTTTTGATTAATACGGCGTATATGGTGGTTGAGTTTGTGGCTGGTTTTATGAGTA 1324 ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 781 TGTTTCTTTTGATCAATACGGCGTATATGGTTGTTGAGTTTGTGGCTGGGTTTATGAGTA 840 Query 1325 ACAGTCTTGGATTGATCTCAGACGCTTGTCATATGTTGTTTGATTGTGCTGCTTTGGCAA 1384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 ACAGTCTTGGATTGATCTCAGACGCTTGTCATATGTTGTTTGATTGTGCTGCTTTGGCAA 900 Query 1385 TTGGGCTGTATGCGTCTTATATCTCTCGTCTTCCTGCAAACCATCAGTATAACTATGGCC 1444 ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 901 TTGGGCTATATGCGTCTTATATCTCCCGTCTTCCTGCAAACCATCAGTACAACTATGGCC 960 Query 1445 GAGGTAGATTTGAAGTGCTTTCTGGTTATGTTAACGCGGTGTTCCTTGTTCTTGTTGGGG 1504 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | Sbjct 961 GAGGTAGATTTGAAGTTCTTTCTGGTTATGTCAACGCGGTGTTCCTTGTTCTTGTTGGAG 1020 Query 1505 CTCTGATTGTGCTTGAGTCGATTGAGAGAATCTTGGATCCTCAGGAGATTTCTACAAATA 1564 || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1021 CTTTGATTGTGCTTGAGTCGATTGAGAGAATCTTGGATCCTCAGGAGATTTCTACGAATA 1080 Query 1565 GTCTTTTGGTTGTTTCGGTTGGTGGGCTTCTCGTGAATATCGTCGGGTTAATCTTTTTCC 1624 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1081 GTCTTTTGGTTGTTTCAGTTGGTGGGCTTCTCGTGAATATTGTCGGGTTAATCTTTTTCC 1140 Query 1625 ACGAGGAACATCATCATGCTCATGGTGGATCTGGTTGCACACATTCTCACTCACACCAAT 1684 |||||||||||||||||||||||||||||||||||||||| |||||||| || || || | Sbjct 1141 ACGAGGAACATCATCATGCTCATGGTGGATCTGGTTGCACGCATTCTCATTCGCAACATT 1200 Query 1685 CCCATAGCCATAAAAATGAGGAGCAT 1710 || || |||| ||| |||| || ||| Sbjct 1201 CCTATGGCCACAAACATGATGACCAT 1226 Score = 761 bits (412), Expect = 0.0 Identities = 476/508 (94%), Gaps = 0/508 (0%) Strand=Plus/Plus Query 1890 CCACAACCACGACCATCATTCTGATCACCAACCTGAAAAAAGCGAAAAGAAGGAGCATCG 1949 ||||||||| || |||||||||| |||| ||| ||||||||| ||||||||||||||||| Sbjct 1256 CCACAACCATGAGCATCATTCTGGTCACAAACTTGAAAAAAGTGAAAAGAAGGAGCATCG 1315 Query 1950 CCACATTGATCACAATATGGAAGGAATCTTTCTTCATGTTTTAGCAGACACAATGGGGAG 2009 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 CCACATTGACCACAACATGGAAGGAATCTTTCTTCATGTTTTAGCAGACACAATGGGGAG 1375 Query 2010 TGTTGGAGTTGTGATATCGACACTCTTGATTAAATACAAGGGCTGGTTAGTTGCAGATCC 2069 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1376 TGTTGGAGTTGTGATATCGACACTCTTGATCAAATACAAGGGCTGGTTAGTTGCTGATCC 1435 Query 2070 AGCCAGCTCAATCTTTATCTCCATCCTCATCATCGCTTCAGTCATTCCGTTGCTACGAAA 2129 ||||||||||||||| || |||||||||||||| |||||||||||||| ||||| ||||| Sbjct 1436 AGCCAGCTCAATCTTCATTTCCATCCTCATCATTGCTTCAGTCATTCCATTGCTCCGAAA 1495 Query 2130 CTCTGCGGAGATTCTACTGCAAAGAGTCCCTAGGGCTCACAGGCAAGACCTGAAAGAAGC 2189 |||||| |||||||||||||||||||||||| |||||||||| || |||||| |||||| Sbjct 1496 CTCTGCAGAGATTCTACTGCAAAGAGTCCCTCGGGCTCACAGACACGACCTGCGAGAAGC 1555 Query 2190 TATGAGGAACATACTTAAGACTAAAGGTGTTTGCAGTATCCAGAGGCTGCATGTATGGAG 2249 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1556 TATGAGGAACATACTTAAGACTAAAGGTGTTTGTAGTATCCAGAGACTGCATGTATGGAG 1615 Query 2250 TTTCACCAACTCAGACGTCGTGGCTACTCTCCATCTCCTTGTATCTGCAGATTCAGACAA 2309 |||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1616 TTTCACGAACTCAGACGTCGTGGCTACTCTCCATCTCCTTGTATCAGCGGATTCAGACAA 1675 Query 2310 GACGGATACTAAGTTACAAGTGTCACGTTTGTTAGAAGATGCAGGAGTAAAGGATTGGAC 2369 |||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| ||| Sbjct 1676 GACGGAAACTAAGTTACAAGTCTCACGTCTGTTAGAAGATGCAGGAGTAAAGGATTTGAC 1735 Query 2370 ATTGCAGGTGGAATCTGTTAACTCATAG 2397 ||||||||||| ||||||||||||||| Sbjct 1736 TTTGCAGGTGGATTCTGTTAACTCATAG 1763 > Ahg931233 jgi|Araly1|931233|scaffold_303690.1 Length=1135 Score = 320 bits (173), Expect = 3e-86 Identities = 202/216 (94%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 1011 GAAGAAGGACTCAGAGAGGGAGTTTCTTGTAACGTTTCTATGTACTATAGTATTGGAACT 1070 ||||| ||||||||||||||||||||| || ||||||||||| ||||| || |||||||| Sbjct 863 GAAGATGGACTCAGAGAGGGAGTTTCTAGTTACGTTTCTATGCACTATTGTGTTGGAACT 922 Query 1071 CTTCTATTTTCCTGAGCTATCTCTTTGGGGATTGTTGCTT-TGTGGTTTGTTGCTTTACA 1129 ||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 923 CTTTTATTTTCCTGAGCTATCTCTTTGGGGATTGTTG-TTGTGTGGTTTGTTGCTTTATA 981 Query 1130 TTGCTGTTAGAGAGTTGGAGTCTGTGTATTCAGATTATCAAGAGATTGGTATGGAATCGC 1189 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 982 TTGCTGTTAGAGAGTTGGACTCTGTGTATTCAGATTATCAAGAGATTGGGATGGAATCGC 1041 Query 1190 CTGAGTCGTTTTCCACTATGTTTATGAAGCCTATCC 1225 | |||||||||||||| ||||||||||||||||||| Sbjct 1042 CCGAGTCGTTTTCCACCATGTTTATGAAGCCTATCC 1077 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90311970895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5