BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04620.1
Length=2397
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930782 jgi|Araly1|930782|scaffold_303239.1 1943 0.0
Ahg931233 jgi|Araly1|931233|scaffold_303690.1 320 3e-86
> Ahg930782 jgi|Araly1|930782|scaffold_303239.1
Length=1784
Score = 1943 bits (1052), Expect = 0.0
Identities = 1168/1226 (95%), Gaps = 0/1226 (0%)
Strand=Plus/Plus
Query 485 GTTACTGTGGTGCTGCTGCTATGATCTTAGCTGAACTCTCTGGCACAGTTTCAGCCAGAG 544
||||||||||||||||||||||||| ||||||||||||||||| || || ||||| ||||
Sbjct 1 GTTACTGTGGTGCTGCTGCTATGATATTAGCTGAACTCTCTGGTACTGTCTCAGCTAGAG 60
Query 545 TCTTGTTTAGTGATACTGGTGGAATTGGAGTTAGATCATCTAAGGTTCGTGGGTTTTGCG 604
|||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTGTCTGGTGATAATAGTGGAATTGGAGTTAGATCATCTAAGGTTCGTGGGTTTTGCG 120
Query 605 TTTTGTTTGCTGGGTTGTTGTTGTTATCAATCAGCTGGGATCGTGTTGATTGTTTCCCGT 664
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 121 TTTTGTTTGCTGGGTTGTTGTTGTTATCTATCAGCTGGGATCGTGTTGATTGTTTCCCTT 180
Query 665 TTTCATCATCTGTTGAAAGTTGGGGTTTTTGGATTTACCCTAAAGAGAATTGCTTGAGGA 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTCATCATCTGTTGAAAGTTGGGGTTTTTGGATTTACCCTAAAGAGAATTGCTTGAGGA 240
Query 725 TTTGGCCTCTGTTGCTTCCGTTTCTATCTGGTTTCTTAGGTTGTTATGAGAAAGTTTCTG 784
|||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 241 TTTGGCCTTTGTTGCTTCCGTTTCTATCTGGGTTCTTGGGTTGTTATGAGAAAGTTTCTT 300
Query 785 TGAATTGGAATGAGATCAAACAGTTAGATCAGAAACGAGTTCGATTACTGTCTTTGTTTC 844
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGAATTGGAATGAGATCAAACAGTTAGATCAGAAACGAGTTCGATTACTGTCTTTGTTTT 360
Query 845 TAACCACTGTGTTGTTGTTCCCACTTGCTATTTGGAGTTTCTTCTTCTCTGGTAGTGGTG 904
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 TAACCACTTTGTTGTTGTTCCCACTTGCTATTTGGAGTTTCTTGTTCTCTGGTAGTGGTG 420
Query 905 ATGATAGTGTCTCTTTTGGGAATTTAGGTTGGCCTTTAGCTAACACTGTTGTATTTGGAG 964
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGATGGTGTCTCTTTTGGGAATTTAGGTTGGCCTTTAGCTAACACTGTTGTATTTGGAG 480
Query 965 TGTTGTTGAGTGAGAATTATAATGATGATAAGTTTTCAAGCTCGAAGAAGAAGGACTCAG 1024
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 481 TATTGTTGAGTGAGAATTATAATGACGATAAGTTTTCGAGCTCGAAGAAGAAGGATTCAG 540
Query 1025 AGAGGGAGTTTCTTGTAACGTTTCTATGTACTATAGTATTGGAACTCTTCTATTTTCCTG 1084
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 TGAGGGAGTTTCTTGTAACGTTTCTATGTACTATTGTATTGGAACTCTTCTATTTTCCTG 600
Query 1085 AGCTATCTCTTTGGGGATTGTTGCTTTGTGGTTTGTTGCTTTACATTGCTGTTAGAGAGT 1144
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 AGTTATCTCTTTGGGGATTGTTGCTTTGTGGTTTGTTGCTTTATGTTGCTGTTAGAGAGT 660
Query 1145 TGGAGTCTGTGTATTCAGATTATCAAGAGATTGGTATGGAATCGCCTGAGTCGTTTTCCA 1204
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 661 TGGACTCTGTGTATTCAGATTATCAAGAGATTGGGATGGAATCGCCTGAGTCGTTTTCAA 720
Query 1205 CTATGTTTATGAAGCCTATCCGTCACATTTTGAGCGAGAAGAAATCGAGGAAGATTGCGT 1264
||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 721 CTATGTTTATGAAGCCTCTACGCCACATTTTGAGCGAGAAGAAATCGAGGAAGATTGCGT 780
Query 1265 TGTTTCTTTTGATTAATACGGCGTATATGGTGGTTGAGTTTGTGGCTGGTTTTATGAGTA 1324
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 781 TGTTTCTTTTGATCAATACGGCGTATATGGTTGTTGAGTTTGTGGCTGGGTTTATGAGTA 840
Query 1325 ACAGTCTTGGATTGATCTCAGACGCTTGTCATATGTTGTTTGATTGTGCTGCTTTGGCAA 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACAGTCTTGGATTGATCTCAGACGCTTGTCATATGTTGTTTGATTGTGCTGCTTTGGCAA 900
Query 1385 TTGGGCTGTATGCGTCTTATATCTCTCGTCTTCCTGCAAACCATCAGTATAACTATGGCC 1444
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 901 TTGGGCTATATGCGTCTTATATCTCCCGTCTTCCTGCAAACCATCAGTACAACTATGGCC 960
Query 1445 GAGGTAGATTTGAAGTGCTTTCTGGTTATGTTAACGCGGTGTTCCTTGTTCTTGTTGGGG 1504
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 961 GAGGTAGATTTGAAGTTCTTTCTGGTTATGTCAACGCGGTGTTCCTTGTTCTTGTTGGAG 1020
Query 1505 CTCTGATTGTGCTTGAGTCGATTGAGAGAATCTTGGATCCTCAGGAGATTTCTACAAATA 1564
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1021 CTTTGATTGTGCTTGAGTCGATTGAGAGAATCTTGGATCCTCAGGAGATTTCTACGAATA 1080
Query 1565 GTCTTTTGGTTGTTTCGGTTGGTGGGCTTCTCGTGAATATCGTCGGGTTAATCTTTTTCC 1624
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1081 GTCTTTTGGTTGTTTCAGTTGGTGGGCTTCTCGTGAATATTGTCGGGTTAATCTTTTTCC 1140
Query 1625 ACGAGGAACATCATCATGCTCATGGTGGATCTGGTTGCACACATTCTCACTCACACCAAT 1684
|||||||||||||||||||||||||||||||||||||||| |||||||| || || || |
Sbjct 1141 ACGAGGAACATCATCATGCTCATGGTGGATCTGGTTGCACGCATTCTCATTCGCAACATT 1200
Query 1685 CCCATAGCCATAAAAATGAGGAGCAT 1710
|| || |||| ||| |||| || |||
Sbjct 1201 CCTATGGCCACAAACATGATGACCAT 1226
Score = 761 bits (412), Expect = 0.0
Identities = 476/508 (94%), Gaps = 0/508 (0%)
Strand=Plus/Plus
Query 1890 CCACAACCACGACCATCATTCTGATCACCAACCTGAAAAAAGCGAAAAGAAGGAGCATCG 1949
||||||||| || |||||||||| |||| ||| ||||||||| |||||||||||||||||
Sbjct 1256 CCACAACCATGAGCATCATTCTGGTCACAAACTTGAAAAAAGTGAAAAGAAGGAGCATCG 1315
Query 1950 CCACATTGATCACAATATGGAAGGAATCTTTCTTCATGTTTTAGCAGACACAATGGGGAG 2009
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CCACATTGACCACAACATGGAAGGAATCTTTCTTCATGTTTTAGCAGACACAATGGGGAG 1375
Query 2010 TGTTGGAGTTGTGATATCGACACTCTTGATTAAATACAAGGGCTGGTTAGTTGCAGATCC 2069
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1376 TGTTGGAGTTGTGATATCGACACTCTTGATCAAATACAAGGGCTGGTTAGTTGCTGATCC 1435
Query 2070 AGCCAGCTCAATCTTTATCTCCATCCTCATCATCGCTTCAGTCATTCCGTTGCTACGAAA 2129
||||||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1436 AGCCAGCTCAATCTTCATTTCCATCCTCATCATTGCTTCAGTCATTCCATTGCTCCGAAA 1495
Query 2130 CTCTGCGGAGATTCTACTGCAAAGAGTCCCTAGGGCTCACAGGCAAGACCTGAAAGAAGC 2189
|||||| |||||||||||||||||||||||| |||||||||| || |||||| ||||||
Sbjct 1496 CTCTGCAGAGATTCTACTGCAAAGAGTCCCTCGGGCTCACAGACACGACCTGCGAGAAGC 1555
Query 2190 TATGAGGAACATACTTAAGACTAAAGGTGTTTGCAGTATCCAGAGGCTGCATGTATGGAG 2249
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1556 TATGAGGAACATACTTAAGACTAAAGGTGTTTGTAGTATCCAGAGACTGCATGTATGGAG 1615
Query 2250 TTTCACCAACTCAGACGTCGTGGCTACTCTCCATCTCCTTGTATCTGCAGATTCAGACAA 2309
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1616 TTTCACGAACTCAGACGTCGTGGCTACTCTCCATCTCCTTGTATCAGCGGATTCAGACAA 1675
Query 2310 GACGGATACTAAGTTACAAGTGTCACGTTTGTTAGAAGATGCAGGAGTAAAGGATTGGAC 2369
|||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||
Sbjct 1676 GACGGAAACTAAGTTACAAGTCTCACGTCTGTTAGAAGATGCAGGAGTAAAGGATTTGAC 1735
Query 2370 ATTGCAGGTGGAATCTGTTAACTCATAG 2397
||||||||||| |||||||||||||||
Sbjct 1736 TTTGCAGGTGGATTCTGTTAACTCATAG 1763
> Ahg931233 jgi|Araly1|931233|scaffold_303690.1
Length=1135
Score = 320 bits (173), Expect = 3e-86
Identities = 202/216 (94%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 1011 GAAGAAGGACTCAGAGAGGGAGTTTCTTGTAACGTTTCTATGTACTATAGTATTGGAACT 1070
||||| ||||||||||||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct 863 GAAGATGGACTCAGAGAGGGAGTTTCTAGTTACGTTTCTATGCACTATTGTGTTGGAACT 922
Query 1071 CTTCTATTTTCCTGAGCTATCTCTTTGGGGATTGTTGCTT-TGTGGTTTGTTGCTTTACA 1129
||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 923 CTTTTATTTTCCTGAGCTATCTCTTTGGGGATTGTTG-TTGTGTGGTTTGTTGCTTTATA 981
Query 1130 TTGCTGTTAGAGAGTTGGAGTCTGTGTATTCAGATTATCAAGAGATTGGTATGGAATCGC 1189
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 982 TTGCTGTTAGAGAGTTGGACTCTGTGTATTCAGATTATCAAGAGATTGGGATGGAATCGC 1041
Query 1190 CTGAGTCGTTTTCCACTATGTTTATGAAGCCTATCC 1225
| |||||||||||||| |||||||||||||||||||
Sbjct 1042 CCGAGTCGTTTTCCACCATGTTTATGAAGCCTATCC 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90311970895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5