BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04622.1
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319272 jgi|Araly1|319272|fgenesh1_pm.C_scaffold_3002288 267 3e-71
> Ahg319272 jgi|Araly1|319272|fgenesh1_pm.C_scaffold_3002288
Length=231
Score = 267 bits (144), Expect = 3e-71
Identities = 214/245 (87%), Gaps = 15/245 (6%)
Strand=Plus/Plus
Query 1 ATGGAGAGAACATCAACGAAGTTCGCTTTTGTTGCCTTCTTTGTTGTTACATTCGTGATG 60
||||||| || ||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAAATATCAATGAAGTTTGCTTTCGTTGCCTTCTTTGTTGTTACATTCGTGATG 60
Query 61 TGCATCGTAACTACACGAAATGTTGAAGCAAAACGTGTATTATCCGAAGAAATGCCACAA 120
|| ||| |||||| || |||||||||||||| ||||||||||| |||||||| |||||
Sbjct 61 TGTATCATAACTATACAAAATGTTGAAGCAAGGCGTGTATTATCGGAAGAAATTCCACAG 120
Query 121 ATTGCTTTGCATCATGAAGCTTTGCAGCAAAATGCGAATCGATGGGGTCTTGGGTGCAAA 180
||||| ||||||| ||| | | || || | |||||||||||||||||||||
Sbjct 121 ATTGCGTTGCATCGTGA---T--G-AG-AA----C----CGATGGGGTCTTGGGTGCAAA 165
Query 181 AAAGGATGTCATTTGATATGTTATGCTCCTGATCCAACTTTTCCTATATGTCGTTGTATA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 AAAGGATGTCATTTGATATGTTATGCTCCTGATCCAACTTTTCCTATATGTCGTTGTATA 225
Query 241 TGCTA 245
|||||
Sbjct 226 TGCTA 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8515982203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5