BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04630.1
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930784 jgi|Araly1|930784|scaffold_303241.1 717 0.0
Ahg495261 jgi|Araly1|495261|fgenesh2_kg.8__1077__AT5G51940.1 614 4e-175
> Ahg930784 jgi|Araly1|930784|scaffold_303241.1
Length=477
Score = 717 bits (388), Expect = 0.0
Identities = 441/467 (94%), Gaps = 2/467 (0%)
Strand=Plus/Plus
Query 70 CGATTTCTCAAATCGACTTTAATGGCTGACGACGATTACAATGAAGTCGATGACTTGGGA 129
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1 CGATTTCTCAAATCGACTTTAATGGCTGACGAAGATTACAACGAAGTCGATGACTTGGGA 60
Query 130 TATGAAGATGAGCCAGCAGAGCCTGAGATCGAAGAAGGAGTAGAGGAAGATGCTGATATC 189
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATGAGGATGAGCCAGTTGAGCCTGAGATCGAAGAAGGAGTAGAGGAAGATGCTGATATC 120
Query 190 AAGGAGAACGATGATGTTAATGTTGACCCTTTGGAAACAGAAGATAAGGTTGAAACAGAA 249
|||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 121 AAGGAGAACGATGATGTTAATGGTGAGCCTATGGAAACAGAAGATAAGGTTGAAACAGAA 180
Query 250 CCTGTGCAACGCCCACGTAAAACCTCTAAGTTTATGACTAAGTATGAACGTGCACGTATC 309
||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 181 CCTGTGCAACGTCCACGTAAAACGTCCAAGTTTATGACCAAGTATGAACGTGCACGTATC 240
Query 310 CTCGGCACTCGTGCTTTGCAGATTAGCATGAATGCTCCTGTTATGGTTGAGTTGGAGGGT 369
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 241 CTCGGCACTCGCGCTTTGCAGATTAGCATGAATGCTCCTGTCATGGTTGAGCTGGAGGGT 300
Query 370 GAGACTGATCCACTTGAGATTGCGATGAAAGAGCTTAGGCAAAGGAAGATTCCATTTACC 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGACTGATCCACTTGAGATTGCGATGAAAGAGCTTAGGCAAAGGAAGATTCCATTTACC 360
Query 430 ATTAGACGTTATCTACCTGATATGAGTTACGAGGAATGGGGAGTTGATGAACTGATCGTC 489
|||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||||
Sbjct 361 ATTAGACGATATCTACCTGATGGGAGTTTTGAAGAATGGGGAGTCGATGAACTGATCGTG 420
Query 490 GAAGACTCGTGGAAACGTCAAGTCGGTGGTGATTGATAAAATCTGGC 536
||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 421 GAAGACTCGTGGAAACGTCAAGTTGGTGGTGATTGATAA--TCTGGC 465
> Ahg495261 jgi|Araly1|495261|fgenesh2_kg.8__1077__AT5G51940.1
Length=486
Score = 614 bits (332), Expect = 4e-175
Identities = 419/462 (91%), Gaps = 2/462 (0%)
Strand=Plus/Plus
Query 68 AGCGATTTCTCAAATCGACTTTAATGGCTGACGACGATTACAATGAAGTCGATGACTTGG 127
||||| ||| |||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 8 AGCGAAATCTAAAATCGACATTAATGGCTGACGAAGATTACAACGAAGTCGATGACTTGG 67
Query 128 GATATGAAGATGAGCCAGCAGAGCCTGAGATCGAAGAAGGAGTAGAGGAAGATGCTGATA 187
||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 68 GATATGAGGATGAGCCAGTGGAGCCTGAGATTGAAGAAGGAGTAGAGGAAGATGCTGATA 127
Query 188 TCAAGGAGAACGATGATGTTAATGTTGACCCT-TTGGAAACAGAAGATAAGGTTGAAACA 246
| |||||||| |||||||| |||| ||| ||| || ||| | ||||||||||| ||||||
Sbjct 128 TGAAGGAGAATGATGATGTCAATGGTGAGCCTCTT-GAAGCTGAAGATAAGGTCGAAACA 186
Query 247 GAACCTGTGCAACGCCCACGTAAAACCTCTAAGTTTATGACTAAGTATGAACGTGCACGT 306
|||||||| ||||| ||||||||||| || ||||||||||| |||||||| ||||| |||
Sbjct 187 GAACCTGTCCAACGTCCACGTAAAACGTCAAAGTTTATGACCAAGTATGAGCGTGCTCGT 246
Query 307 ATCCTCGGCACTCGTGCTTTGCAGATTAGCATGAATGCTCCTGTTATGGTTGAGTTGGAG 366
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 247 ATCCTCGGCACTCGCGCTTTGCAGATTAGCATGAATGCTCCTGTCATGGTTGAGCTGGAG 306
Query 367 GGTGAGACTGATCCACTTGAGATTGCGATGAAAGAGCTTAGGCAAAGGAAGATTCCATTT 426
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 307 GGTGAGACTGATCCACTTGAGATTGCGATGAAGGAGCTTAGGCAGCGGAAGATACCATTC 366
Query 427 ACCATTAGACGTTATCTACCTGATATGAGTTACGAGGAATGGGGAGTTGATGAACTGATC 486
|| |||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 367 ACTATTAGACGATATCTACCTGATGGGAGTTTCGAGGAATGGGGAGTTGATGAACTGATC 426
Query 487 GTCGAAGACTCGTGGAAACGTCAAGTCGGTGGTGATTGATAA 528
|| |||||||| |||||||||||||| |||||||||||||||
Sbjct 427 GTGGAAGACTCATGGAAACGTCAAGTAGGTGGTGATTGATAA 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27905975244
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5