BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04650.1 Length=1526 Score E Sequences producing significant alignments: (Bits) Value Ahg480099 jgi|Araly1|480099|fgenesh2_kg.3__2800__AT2G04650.1 2412 0.0 > Ahg480099 jgi|Araly1|480099|fgenesh2_kg.3__2800__AT2G04650.1 Length=1511 Score = 2412 bits (1306), Expect = 0.0 Identities = 1455/1525 (95%), Gaps = 17/1525 (1%) Strand=Plus/Plus Query 1 CAAAAAACTTGAGAATATCCGACTACAAAGATACGACCTTTCAATACAAAATCAGATCAT 60 ||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 1 CAAAAAACTTGGGAATATCCGACTACAAAGATACCACCTTTTAATACAAAATCAGATCAT 60 Query 61 CGTCGTGTGTTTAACTTTAACGAATCTAGG-TTTTATTGAATCTCGACATGTCGGAGGAG 119 |||| ||| ||||||||||||||| |||| ||||| ||||||||||||||||| Sbjct 61 CGTC--GTG------TTTAACGAATCTAGGCTTTT-TTGAA--TCGACATGTCGGAGGAG 109 Query 120 AAAGTCGTCGCTGTGATCATGGTTGGTGGTCCGACCAAAGGAACTCGATTTCGCCCGTTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 110 AAAGTCGTCGCCGTGATCATGGTTGGTGGTCCGACCAAAGGAACTCGATTTCGCCCATTA 169 Query 180 TCGTTCAATACACCGAAACCATTGATTCCTTTGGCTGGTCAACCTATGATTCATCATCCT 239 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 170 TCGTTCAATACACCGAAACCACTGATTCCTTTGGCTGGTCAACCTATGATTCATCATCCT 229 Query 240 ATCTCTGCTTGTAAAAAGATATCAAATCTGGCTCAGATTTTTCTGATTGGATTTTACGAG 299 || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 230 ATTTCTGCTTGTAAAAAGATATCAAATCTTGCTCAGATTTTTTTGATTGGATTTTACGAG 289 Query 300 GAACGAGAATTTGCTTTGTATGTGTCTTCAATATCTAACGAGCTGAAAATTCCAGTGCGA 359 ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 290 GAAAGAGAATTTGCTTTGTATGTCTCTTCAATATCTAACGAGCTGAAAATTCCAGTCCGA 349 Query 360 TACTTGAAAGAAGATAAACCCCATGGTTCAGCTGGTGCTCTTTATTACTTTCGTGATAGA 419 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 350 TACTTGAAAGAAGATAAGCCCCATGGTTCGGCTGGTGCTCTTTATTACTTTCGTGATAGA 409 Query 420 ATTATGGAAGAGAAACCGTCACATGTTTTCCTCCTCAACTGTGATGTTTGCTGTTCTTTC 479 ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 410 ATTATGGAAGAAAAACCGTCAAATGTTTTCCTCCTGAACTGTGATGTTTGCTGTTCTTTC 469 Query 480 CCTCTTCAAGGCATACTTGACGCACATCGAAGATATGGTGGTATTGGAACTATGCTAGTA 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 CCTCTTCAAGGCATACTTGACGCACATCGAAGATATGGTGGTATTGGAACTATGCTAGTA 529 Query 540 ATCAAGGTTTCTGCAGAAGCAGCTAGCCAATTTGGTGAATTGATAGCTGATCCTGATACT 599 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 530 ATCAAGGTTTCTGCAGAAGCAGCCAGCCAATTTGGAGAATTGATAGCTGATCCTGATACT 589 Query 600 AAAGAACTCCTGCATTATACAGAGAAGCCCGAGACTTTCGTCAGTGACTTGATAAACTGT 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 AAAGAACTCCTGCATTATACAGAGAAGCCCGAGACTTTCGTCAGTGACTTGATAAACTGT 649 Query 660 GGTGTCTATGTGTTTACTTCAGATATCTTCAATGCAATTGAAGAAGTATATAGCCAAATA 719 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 650 GGTGTCTATGTGTTTACCTCAGATATCTTCAATGCCATTGAAGAAGTATATAGCCAAATA 709 Query 720 AGAGACACATCTAGCAACTACCAATCCGCTACAAGGTCTGTTCCTGCAGATTTTGTGAGA 779 |||||||||||||||||||||||||| ||||||||||| |||||| | |||||||||||| Sbjct 710 AGAGACACATCTAGCAACTACCAATCTGCTACAAGGTCGGTTCCTACGGATTTTGTGAGA 769 Query 780 TTAGATCAAGATATATTGTCACCTCTTGCTGGAAAGAAGCAACTATACACATATGAGAAC 839 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 770 TTAGATCAAGATATATTGTCACCTCTTGCTGGAAAGAAGCAACTATACACATATGAGAAT 829 Query 840 AAGGATTTCTGGGAACAGATCAAGACTCCGGGGAAATCTTTGAAATGCTCGGCTTTATAT 899 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 830 AAGGATTTCTGGGAACAAATTAAGACTCCGGGGAAATCTTTGAAATGCTCGGCTTTATAT 889 Query 900 CTTTCCCAATTCCGCGAAACATCGCCTCATATTTTAGCTTCAGGAGATGGTACTAATAGG 959 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 890 CTTTCCCAATTCCGCCAAACATCGCCTCATATTTTAGCTTCAGGAGATGGTACTAATAGG 949 Query 960 AAACC-AACTATAATTGGTGATGTTTATATTCACCCATCCGTAAAACTGCATCCAACCGC 1018 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 AAACCGAA-TATAATTGGTGATGTTTATATTCACCCATCCGTAAAACTGCATCCAACCGC 1008 Query 1019 AAAGATCGGTCCAAATGTGTCGATATCAGCAAATGTTCGTGTTGGACCTGGTGTAAGGCT 1078 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 1009 AAAGATCGGTCCAAATGTGTCGATCTCAGCAAACGTTCGTGTTGGACCTGGTGTAAGGCT 1068 Query 1079 TATTAGCTGCATAATCTTAGACGATGTTGAAATCAAGGAGAATGCTGTTGTTATAAACTC 1138 ||||| |||||||||||| || ||||||||||||||||| ||||| |||||||||||||| Sbjct 1069 TATTAACTGCATAATCTTTGATGATGTTGAAATCAAGGACAATGCCGTTGTTATAAACTC 1128 Query 1139 AATTATCGGATGGAAATCTTCTATAGGTAGATGGTCAAGAGTTCAAGCTAGTGGAGATTA 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1129 AATTATCGGATGGAAATCTTCTATAGGTAGATGGTCAAGAGTTCAAGCTAGTGGAGATTA 1188 Query 1199 CAATGACAGGCTTGGGATTACCATTCTTGGTGAGGCTGTAACTGTGGAAGATGAAGTAGC 1258 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1189 TAATGAGAGGCTTGGGATTACCATTCTTGGTGAGGCTGTAACTGTAGAAGATGAAGTTGC 1248 Query 1259 AGTCATAGGAAGCATTGTTCTCCAGAATAAGACTCTTAATGTTAGTGTTCAAGATGATAT 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1249 AGTCATAGGAAGCATTGTTCTCCAGAATAAGACTCTTAATGTTAGTGTTCAAGATGATAT 1308 Query 1319 CATCTTGTGATTTATCACAATGATTATCGTTTGGAttttttttctttttAATTGAAACAG 1378 ||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||| Sbjct 1309 AATCTTGTGATTTATCACCATGATTATCGTTCGGATTTTTTT-CTTTTTAATTGAAACAG 1367 Query 1379 AGAAACTTTTACAGAATTGTGTATTACATGAATTGAGTTCACAGGATTAGATTTTGAGTA 1438 | ||| |||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1368 AAAAAGAATTACAGAATTGTATCTTACATGAATTGAGTTCACAGGATTAGATTTTGAGTT 1427 Query 1439 AGT-GAAACTATGGAAGATTTGTAAACTCTCACTGTACTTTGTGTTTAGATACTAAAAAG 1497 ||| ||| |||||||||||||||||||||||| |||||||||| |||| ||||||||||| Sbjct 1428 AGTAGAA-CTATGGAAGATTTGTAAACTCTCATTGTACTTTGTTTTTATATACTAAAAAG 1486 Query 1498 ATTTTAGAAGAAAGAGTTTTAAAAG 1522 ||||||||||||||||||||||||| Sbjct 1487 ATTTTAGAAGAAAGAGTTTTAAAAG 1511 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57135367500 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5