BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04650.1
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480099 jgi|Araly1|480099|fgenesh2_kg.3__2800__AT2G04650.1 2412 0.0
> Ahg480099 jgi|Araly1|480099|fgenesh2_kg.3__2800__AT2G04650.1
Length=1511
Score = 2412 bits (1306), Expect = 0.0
Identities = 1455/1525 (95%), Gaps = 17/1525 (1%)
Strand=Plus/Plus
Query 1 CAAAAAACTTGAGAATATCCGACTACAAAGATACGACCTTTCAATACAAAATCAGATCAT 60
||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1 CAAAAAACTTGGGAATATCCGACTACAAAGATACCACCTTTTAATACAAAATCAGATCAT 60
Query 61 CGTCGTGTGTTTAACTTTAACGAATCTAGG-TTTTATTGAATCTCGACATGTCGGAGGAG 119
|||| ||| ||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 61 CGTC--GTG------TTTAACGAATCTAGGCTTTT-TTGAA--TCGACATGTCGGAGGAG 109
Query 120 AAAGTCGTCGCTGTGATCATGGTTGGTGGTCCGACCAAAGGAACTCGATTTCGCCCGTTA 179
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 110 AAAGTCGTCGCCGTGATCATGGTTGGTGGTCCGACCAAAGGAACTCGATTTCGCCCATTA 169
Query 180 TCGTTCAATACACCGAAACCATTGATTCCTTTGGCTGGTCAACCTATGATTCATCATCCT 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 170 TCGTTCAATACACCGAAACCACTGATTCCTTTGGCTGGTCAACCTATGATTCATCATCCT 229
Query 240 ATCTCTGCTTGTAAAAAGATATCAAATCTGGCTCAGATTTTTCTGATTGGATTTTACGAG 299
|| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 230 ATTTCTGCTTGTAAAAAGATATCAAATCTTGCTCAGATTTTTTTGATTGGATTTTACGAG 289
Query 300 GAACGAGAATTTGCTTTGTATGTGTCTTCAATATCTAACGAGCTGAAAATTCCAGTGCGA 359
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 290 GAAAGAGAATTTGCTTTGTATGTCTCTTCAATATCTAACGAGCTGAAAATTCCAGTCCGA 349
Query 360 TACTTGAAAGAAGATAAACCCCATGGTTCAGCTGGTGCTCTTTATTACTTTCGTGATAGA 419
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 350 TACTTGAAAGAAGATAAGCCCCATGGTTCGGCTGGTGCTCTTTATTACTTTCGTGATAGA 409
Query 420 ATTATGGAAGAGAAACCGTCACATGTTTTCCTCCTCAACTGTGATGTTTGCTGTTCTTTC 479
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 410 ATTATGGAAGAAAAACCGTCAAATGTTTTCCTCCTGAACTGTGATGTTTGCTGTTCTTTC 469
Query 480 CCTCTTCAAGGCATACTTGACGCACATCGAAGATATGGTGGTATTGGAACTATGCTAGTA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CCTCTTCAAGGCATACTTGACGCACATCGAAGATATGGTGGTATTGGAACTATGCTAGTA 529
Query 540 ATCAAGGTTTCTGCAGAAGCAGCTAGCCAATTTGGTGAATTGATAGCTGATCCTGATACT 599
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 530 ATCAAGGTTTCTGCAGAAGCAGCCAGCCAATTTGGAGAATTGATAGCTGATCCTGATACT 589
Query 600 AAAGAACTCCTGCATTATACAGAGAAGCCCGAGACTTTCGTCAGTGACTTGATAAACTGT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 AAAGAACTCCTGCATTATACAGAGAAGCCCGAGACTTTCGTCAGTGACTTGATAAACTGT 649
Query 660 GGTGTCTATGTGTTTACTTCAGATATCTTCAATGCAATTGAAGAAGTATATAGCCAAATA 719
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 650 GGTGTCTATGTGTTTACCTCAGATATCTTCAATGCCATTGAAGAAGTATATAGCCAAATA 709
Query 720 AGAGACACATCTAGCAACTACCAATCCGCTACAAGGTCTGTTCCTGCAGATTTTGTGAGA 779
|||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||
Sbjct 710 AGAGACACATCTAGCAACTACCAATCTGCTACAAGGTCGGTTCCTACGGATTTTGTGAGA 769
Query 780 TTAGATCAAGATATATTGTCACCTCTTGCTGGAAAGAAGCAACTATACACATATGAGAAC 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TTAGATCAAGATATATTGTCACCTCTTGCTGGAAAGAAGCAACTATACACATATGAGAAT 829
Query 840 AAGGATTTCTGGGAACAGATCAAGACTCCGGGGAAATCTTTGAAATGCTCGGCTTTATAT 899
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 830 AAGGATTTCTGGGAACAAATTAAGACTCCGGGGAAATCTTTGAAATGCTCGGCTTTATAT 889
Query 900 CTTTCCCAATTCCGCGAAACATCGCCTCATATTTTAGCTTCAGGAGATGGTACTAATAGG 959
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CTTTCCCAATTCCGCCAAACATCGCCTCATATTTTAGCTTCAGGAGATGGTACTAATAGG 949
Query 960 AAACC-AACTATAATTGGTGATGTTTATATTCACCCATCCGTAAAACTGCATCCAACCGC 1018
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AAACCGAA-TATAATTGGTGATGTTTATATTCACCCATCCGTAAAACTGCATCCAACCGC 1008
Query 1019 AAAGATCGGTCCAAATGTGTCGATATCAGCAAATGTTCGTGTTGGACCTGGTGTAAGGCT 1078
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1009 AAAGATCGGTCCAAATGTGTCGATCTCAGCAAACGTTCGTGTTGGACCTGGTGTAAGGCT 1068
Query 1079 TATTAGCTGCATAATCTTAGACGATGTTGAAATCAAGGAGAATGCTGTTGTTATAAACTC 1138
||||| |||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 1069 TATTAACTGCATAATCTTTGATGATGTTGAAATCAAGGACAATGCCGTTGTTATAAACTC 1128
Query 1139 AATTATCGGATGGAAATCTTCTATAGGTAGATGGTCAAGAGTTCAAGCTAGTGGAGATTA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 AATTATCGGATGGAAATCTTCTATAGGTAGATGGTCAAGAGTTCAAGCTAGTGGAGATTA 1188
Query 1199 CAATGACAGGCTTGGGATTACCATTCTTGGTGAGGCTGTAACTGTGGAAGATGAAGTAGC 1258
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1189 TAATGAGAGGCTTGGGATTACCATTCTTGGTGAGGCTGTAACTGTAGAAGATGAAGTTGC 1248
Query 1259 AGTCATAGGAAGCATTGTTCTCCAGAATAAGACTCTTAATGTTAGTGTTCAAGATGATAT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 AGTCATAGGAAGCATTGTTCTCCAGAATAAGACTCTTAATGTTAGTGTTCAAGATGATAT 1308
Query 1319 CATCTTGTGATTTATCACAATGATTATCGTTTGGAttttttttctttttAATTGAAACAG 1378
||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct 1309 AATCTTGTGATTTATCACCATGATTATCGTTCGGATTTTTTT-CTTTTTAATTGAAACAG 1367
Query 1379 AGAAACTTTTACAGAATTGTGTATTACATGAATTGAGTTCACAGGATTAGATTTTGAGTA 1438
| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1368 AAAAAGAATTACAGAATTGTATCTTACATGAATTGAGTTCACAGGATTAGATTTTGAGTT 1427
Query 1439 AGT-GAAACTATGGAAGATTTGTAAACTCTCACTGTACTTTGTGTTTAGATACTAAAAAG 1497
||| ||| |||||||||||||||||||||||| |||||||||| |||| |||||||||||
Sbjct 1428 AGTAGAA-CTATGGAAGATTTGTAAACTCTCATTGTACTTTGTTTTTATATACTAAAAAG 1486
Query 1498 ATTTTAGAAGAAAGAGTTTTAAAAG 1522
|||||||||||||||||||||||||
Sbjct 1487 ATTTTAGAAGAAAGAGTTTTAAAAG 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57135367500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5