BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G04690.1 Length=940 Score E Sequences producing significant alignments: (Bits) Value Ahg480102 jgi|Araly1|480102|fgenesh2_kg.3__2803__AT2G04690.1 1234 0.0 > Ahg480102 jgi|Araly1|480102|fgenesh2_kg.3__2803__AT2G04690.1 Length=909 Score = 1234 bits (668), Expect = 0.0 Identities = 849/930 (91%), Gaps = 38/930 (4%) Strand=Plus/Plus Query 1 AAGAGAGATCCAAAGAGATAAGAATAAC-----A-TT-AAAGTT---A--C-TCTCTCGG 47 |||||||||||||||||||||||||||| | || |||||| | | | |||||| Sbjct 1 AAGAGAGATCCAAAGAGATAAGAATAACATTAAAGTTCAAAGTTCAAACCCATGTCTCGG 60 Query 48 TGTGGGTATGACGACGAATTGAC-TTAAAATTTTCGTTAGTCATCTTTTGTCAATTTCGT 106 | | ||||||||||||||||||| ||||||||||| || ||||||||||||||| ||||| Sbjct 61 TATTGGTATGACGACGAATTGACTTTAAAATTTTC-TTGGTCATCTTTTGTCAAATTCGT 119 Query 107 TTCAATCATTTTTGACACAAAAAGTATGGAACTTCAAGTCCTTGTTCTTCGTCCAAtctt 166 ||| |||| || |||||||||| |||||||||||||||| |||||||||||| Sbjct 120 TTCCATCA---TT-ACACAAAAAGCATGGAACTTCAAGTCC---TTCTTCGTCCAA---- 168 Query 167 cttcttcttcttcttcgtcttcttGACAATTCTACAACAATCCTCTTCTGCTCGGGTTCT 226 |||||||||||||| | ||||||||||| |||||||||| |||||||||||| |||| Sbjct 169 --TCTTCTTCTTCTTC--C-TCTTGACAATTTTACAACAATCTTCTTCTGCTCGGATTCT 223 Query 227 TACAATCACCAAGCCTGATAGACATGACTACGCCGCAAGTGCTCGTTGGCTTGTCTCTCA 286 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 224 TACAATCTCTAAGCCTGATAGACATGACTACGCCGCAAGTGCTCGTTGGCTTGTCTCTCA 283 Query 287 GAATTCTTGGGGTGTTCTTAGCACACTATCCGTTGATCATAAAGGCGCTCCCTTCGGGAA 346 ||||||||||||||||||||||||||||||||| |||||| |||||||||| || ||||| Sbjct 284 GAATTCTTGGGGTGTTCTTAGCACACTATCCGTCGATCATGAAGGCGCTCCGTTTGGGAA 343 Query 347 TGTTGTATCGTTTAGTGATGGTTTACCCGAGAAAGGTAACGGTATACCTTACTTTTACTT 406 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 344 TGTTGTATCGTTTAGTGATGGTTTACCCGAGAAAGGCAACGGTATACCATACTTTTACTT 403 Query 407 AACAACACTTGATCCAACTGCAAGAAACGCACTTAAAGACCAGAGAGCTTCACTTGCAAT 466 |||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 404 AACAACTCTTGATCCAACTGCAAGAAACGCACTAAAAGACCAGAGAGCTTCACTCGCAAT 463 Query 467 TAGTGAATCTCCTC-TTGGAACTTGTACAAGAGATCCAATGAATCCTACTTGCTCTAAAC 525 |||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 464 TAGTGAATCTCC-CGTTGGAACTTGTAAAAGAGATCCAATGAATCCTACTTGCTCTAAAC 522 Query 526 TAACCCTTACCGGGAAGTTGCTGATATTGGAAGGAGGATCTGAGGAAGCAGAAGTAGCCA 585 |||| |||||||| ||||| ||||||||||| | |||||||||||||||||||||||| | Sbjct 523 TAACTCTTACCGGAAAGTTACTGATATTGGATGAAGGATCTGAGGAAGCAGAAGTAGCGA 582 Query 586 AAAAGGCTTTATTCACAAAGCATCCAGAGATGATGGATTGGCCTAAGGATCATGATTTCC 645 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 583 AAAAAGCTTTATTCACAAAGCATCCAGAGATGATGGATTGGCCTGAGGATCATGATTTCC 642 Query 646 GCTTCTTT-AAACTCGAGATCATCGATATATTTCTCATCAATTGGTATGGTGGAGCTAAA 704 |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 643 GCTT-TTTCAAACTCGAGATCATCGATATATTTCTGATCAATTGGTATGGTGGAGCTAAA 701 Query 705 CCTATCACTGTAGATGAATACCTTCATGCCAAGTCGATCAAACTCGCTTCCTTTTTATAA 764 || ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 702 CCCATCACTGTAGATGAATACCTTCATGCCAAGTCGATCAAAGTCGTTTCCTTTTTATAA 761 Query 765 TAACTCACAAGAATCAAGCAAATGGTGAAGCAAGAAAATGTATATTGGATGA-ACAATAA 823 |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 762 TAACTCACCGGAATCAAGCAAATGGTGAAGCAAGAAAATGTATATTGGAT-ACACAATAA 820 Query 824 AAAGTGTGTAACTGTTTCTGTAAATAACTCTTTGTTTTGGACCATAATAGATATTAAAAT 883 || |||||||||||||||||||||| |||||||||||| ||| || |||||| ||||||| Sbjct 821 AATGTGTGTAACTGTTTCTGTAAATGACTCTTTGTTTTCGAC-ATGATAGATTTTAAAAT 879 Query 884 CTCTTGTAAATTACCTCAAAGCAATTTCAA 913 ||| ||||||||||| |||||||||||||| Sbjct 880 CTCCTGTAAATTACCACAAAGCAATTTCAA 909 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34882469055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5