BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04690.1
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480102 jgi|Araly1|480102|fgenesh2_kg.3__2803__AT2G04690.1 1234 0.0
> Ahg480102 jgi|Araly1|480102|fgenesh2_kg.3__2803__AT2G04690.1
Length=909
Score = 1234 bits (668), Expect = 0.0
Identities = 849/930 (91%), Gaps = 38/930 (4%)
Strand=Plus/Plus
Query 1 AAGAGAGATCCAAAGAGATAAGAATAAC-----A-TT-AAAGTT---A--C-TCTCTCGG 47
|||||||||||||||||||||||||||| | || |||||| | | | ||||||
Sbjct 1 AAGAGAGATCCAAAGAGATAAGAATAACATTAAAGTTCAAAGTTCAAACCCATGTCTCGG 60
Query 48 TGTGGGTATGACGACGAATTGAC-TTAAAATTTTCGTTAGTCATCTTTTGTCAATTTCGT 106
| | ||||||||||||||||||| ||||||||||| || ||||||||||||||| |||||
Sbjct 61 TATTGGTATGACGACGAATTGACTTTAAAATTTTC-TTGGTCATCTTTTGTCAAATTCGT 119
Query 107 TTCAATCATTTTTGACACAAAAAGTATGGAACTTCAAGTCCTTGTTCTTCGTCCAAtctt 166
||| |||| || |||||||||| |||||||||||||||| ||||||||||||
Sbjct 120 TTCCATCA---TT-ACACAAAAAGCATGGAACTTCAAGTCC---TTCTTCGTCCAA---- 168
Query 167 cttcttcttcttcttcgtcttcttGACAATTCTACAACAATCCTCTTCTGCTCGGGTTCT 226
|||||||||||||| | ||||||||||| |||||||||| |||||||||||| ||||
Sbjct 169 --TCTTCTTCTTCTTC--C-TCTTGACAATTTTACAACAATCTTCTTCTGCTCGGATTCT 223
Query 227 TACAATCACCAAGCCTGATAGACATGACTACGCCGCAAGTGCTCGTTGGCTTGTCTCTCA 286
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 TACAATCTCTAAGCCTGATAGACATGACTACGCCGCAAGTGCTCGTTGGCTTGTCTCTCA 283
Query 287 GAATTCTTGGGGTGTTCTTAGCACACTATCCGTTGATCATAAAGGCGCTCCCTTCGGGAA 346
||||||||||||||||||||||||||||||||| |||||| |||||||||| || |||||
Sbjct 284 GAATTCTTGGGGTGTTCTTAGCACACTATCCGTCGATCATGAAGGCGCTCCGTTTGGGAA 343
Query 347 TGTTGTATCGTTTAGTGATGGTTTACCCGAGAAAGGTAACGGTATACCTTACTTTTACTT 406
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 344 TGTTGTATCGTTTAGTGATGGTTTACCCGAGAAAGGCAACGGTATACCATACTTTTACTT 403
Query 407 AACAACACTTGATCCAACTGCAAGAAACGCACTTAAAGACCAGAGAGCTTCACTTGCAAT 466
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 404 AACAACTCTTGATCCAACTGCAAGAAACGCACTAAAAGACCAGAGAGCTTCACTCGCAAT 463
Query 467 TAGTGAATCTCCTC-TTGGAACTTGTACAAGAGATCCAATGAATCCTACTTGCTCTAAAC 525
|||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 464 TAGTGAATCTCC-CGTTGGAACTTGTAAAAGAGATCCAATGAATCCTACTTGCTCTAAAC 522
Query 526 TAACCCTTACCGGGAAGTTGCTGATATTGGAAGGAGGATCTGAGGAAGCAGAAGTAGCCA 585
|||| |||||||| ||||| ||||||||||| | |||||||||||||||||||||||| |
Sbjct 523 TAACTCTTACCGGAAAGTTACTGATATTGGATGAAGGATCTGAGGAAGCAGAAGTAGCGA 582
Query 586 AAAAGGCTTTATTCACAAAGCATCCAGAGATGATGGATTGGCCTAAGGATCATGATTTCC 645
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 583 AAAAAGCTTTATTCACAAAGCATCCAGAGATGATGGATTGGCCTGAGGATCATGATTTCC 642
Query 646 GCTTCTTT-AAACTCGAGATCATCGATATATTTCTCATCAATTGGTATGGTGGAGCTAAA 704
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 643 GCTT-TTTCAAACTCGAGATCATCGATATATTTCTGATCAATTGGTATGGTGGAGCTAAA 701
Query 705 CCTATCACTGTAGATGAATACCTTCATGCCAAGTCGATCAAACTCGCTTCCTTTTTATAA 764
|| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 702 CCCATCACTGTAGATGAATACCTTCATGCCAAGTCGATCAAAGTCGTTTCCTTTTTATAA 761
Query 765 TAACTCACAAGAATCAAGCAAATGGTGAAGCAAGAAAATGTATATTGGATGA-ACAATAA 823
|||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 762 TAACTCACCGGAATCAAGCAAATGGTGAAGCAAGAAAATGTATATTGGAT-ACACAATAA 820
Query 824 AAAGTGTGTAACTGTTTCTGTAAATAACTCTTTGTTTTGGACCATAATAGATATTAAAAT 883
|| |||||||||||||||||||||| |||||||||||| ||| || |||||| |||||||
Sbjct 821 AATGTGTGTAACTGTTTCTGTAAATGACTCTTTGTTTTCGAC-ATGATAGATTTTAAAAT 879
Query 884 CTCTTGTAAATTACCTCAAAGCAATTTCAA 913
||| ||||||||||| ||||||||||||||
Sbjct 880 CTCCTGTAAATTACCACAAAGCAATTTCAA 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34882469055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5