BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04730.1
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935 782 0.0
Ahg934582 jgi|Araly1|934582|scaffold_402570.1 350 2e-95
Ahg905435 jgi|Araly1|905435|Al_scaffold_0003_2563 333 2e-90
Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077 108 1e-22
Ahg317222 jgi|Araly1|317222|fgenesh1_pm.C_scaffold_3000238 106 4e-22
Ahg929122 jgi|Araly1|929122|scaffold_301579.1 76.8 3e-13
Ahg930557 jgi|Araly1|930557|scaffold_303014.1 75.0 1e-12
Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001 75.0 1e-12
Ahg925199 jgi|Araly1|925199|scaffold_200760.1 60.2 3e-08
> Ahg905807 jgi|Araly1|905807|Al_scaffold_0003_2935
Length=903
Score = 782 bits (423), Expect = 0.0
Identities = 586/663 (88%), Gaps = 18/663 (3%)
Strand=Plus/Plus
Query 344 aaaGATACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCTAACAAGGTGGATCGAACCC 403
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 253 AAAGATACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCAAACAAGGTGGATCGAACCT 312
Query 404 AGGTATTCCCACCACCTAATCGGATGCGCAAGGTTCAGTTACGCTCTTGGATACGTGGGT 463
|| ||||| ||||||||||||||||| | |||||||| |||||||||||||||||||| |
Sbjct 313 AGATATTCTCACCACCTAATCGGATGTGAAAGGTTCACTTACGCTCTTGGATACGTGGAT 372
Query 464 AATATCTCATGTCGTAGCCACAAATTATTGAGGTTTATAGATTATTTCTTCCATGGACCT 523
|||| || ||||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 373 AATAAGTCTTGTCGTAGCCACAAATTATTGAGGTTTATAGATGATTACTTCTATGGACCT 432
Query 524 GAGTTAGAATGGTATGAAATCTATGATTTCGAGTCTGGTTTATGGACGACTCTTGATGTC 583
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 433 GAGTTTGAATGGTATGAAATCTACGATTTCGAGTCTGGTTTATGGGCGACTCTTGATGTC 492
Query 584 ACTCCACACTGGTGTATATCTCTTGGTAGCCATGGCATATCTATTAAAGGAAACACTTAT 643
|||||||||||||||||||| |||||||||||||| || ||| |||| ||||||||||||
Sbjct 493 ACTCCACACTGGTGTATATCGCTTGGTAGCCATGGAATTTCTCTTAAGGGAAACACTTAT 552
Query 644 TGGAGTGCTATTACAAGAAACTCACGCAGCCACGGATTGACCATATATGATCATGACCAC 703
||||||||||||| ||||||| ||||| | ||||||||||||||| |||||||||||||
Sbjct 553 TGGAGTGCTATTAAAAGAAACGCACGC--C-ACGGATTGACCATATCTGATCATGACCAC 609
Query 704 ATAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCTTCTGCCTCTACCGTTAAAC 763
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 610 ATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTGCCTCTACCGTTAAGC 669
Query 764 GCTGAGTATTATGGCGATGTGATTTTATCTTCTGTTAAAGAAGAGAAGCTTGCGGTTTTA 823
| |||||||||||| |||||| ||| | || ||||| ||||||||||||||||| ||||
Sbjct 670 GTTGAGTATTATGGTTATGTGACTTTGTTTTGTGTTAGAGAAGAGAAGCTTGCGGCTTTA 729
Query 824 CAACAGCAA-AACCGT-GCGAATCCATATATGTTTGATATATGGATTACAATTAATATTG 881
||||| || |||||| | ||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 730 CAACAA-AACAACCGTTG-GAATCCATATAAGTTTAATATATGGATTACAACTAATATTG 787
Query 882 AGCCTGGCCATGTGTTATGGACCAAGTTCTTGAAAGTGGATATGGAAACTGTAATGGAAA 941
||| || || |||| |||| ||| ||||||| ||| ||||||| ||||| || |
Sbjct 788 AGCATGAACAGGTGTCGTGGAGCAAATTCTTGACAGTAGATATGGGAACTG-AA---A-- 841
Query 942 CTCCATTTAAAAGTAGTGAAAGTTTCTTCATTGATGAGAAAAACAAAATTGTCATGAGTT 1001
|||||| || || | ||| ||||| |||||||||||| |||| ||| ||| |||| ||
Sbjct 842 CTCCATCTACAA--A-TGAGAGTTTTTTCATTGATGAGGAAAA-AAA-TTGCCATGCTTT 896
Query 1002 TTG 1004
|||
Sbjct 897 TTG 899
Score = 335 bits (181), Expect = 5e-91
Identities = 232/257 (90%), Gaps = 2/257 (1%)
Strand=Plus/Plus
Query 1 ATGACTATCACAAATCTCCCAAGCGATTTATTGGAGGAGATTTTCTCTAGGTTTCCATTG 60
||||| ||||||||||||||||||| |||||| |||||||||||||| || |||| |||
Sbjct 1 ATGACGATCACAAATCTCCCAAGCGTTTTATTAGAGGAGATTTTCTCCAGACTTCCTTTG 60
Query 61 AACTCTATGAGAGCAGTGCGATTAGCTTGCAAAACGTTTTATACTTTATCTAAATGTAAG 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 61 AACTCTATGAGAGCAGTGCGATTAGCTTGCAAAACCTTTTATACTTTATCTAAAGGTAAG 120
Query 121 AGCTTTGCCAAGCTACACTTTGGTAAAGAAACAACAACAACCAA-GGAAGGGGAGTCCCA 179
|||||||| ||||||||| ||||||||||| || |||||| ||| |||||| ||||| |
Sbjct 121 AGCTTTGCGAAGCTACACATTGGTAAAGAAGCAGCAACAA-CAAGGGAAGGAGAGTCTCG 179
Query 180 GATGATATTGTTGATGGATTACAATCTTTATTTGATTAGCGTTGTTGTCGATGGTGATCC 239
|||||| |||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 180 GATGATCTTGTTGATGGATTACAATCTTTATTTGATTAGCGTTGTTGCCGGTGAAGATCC 239
Query 240 GTATATAGAGTGTAAAG 256
|||||||||| |||||
Sbjct 240 ATATATAGAGTCTAAAG 256
> Ahg934582 jgi|Araly1|934582|scaffold_402570.1
Length=1276
Score = 350 bits (189), Expect = 2e-95
Identities = 854/1159 (74%), Gaps = 110/1159 (9%)
Strand=Plus/Plus
Query 34 GAGGAGATTTT-CTCTAGGTTTCCATTGAACTCTATGAGAGCAGTGCGATTAGCTTGCAA 92
||||||||||| | |||| |||| ||||| ||| ||||||||||| ||||| |||||||
Sbjct 60 GAGGAGATTTTAAT-TAGGGTTCCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAA 118
Query 93 AACGTTT--TATACTTTATCTAAAT-GTAAGAGCTTTGC-CAAGCTACACTTTGGTAAAG 148
|| ||| | ||| |||| ||| ||| ||||||| | ||| | || ||||||||
Sbjct 119 AA--TTTGGAACACTCTATC-CAATAGTAGGAGCTTT-CTGAAGTTGTACATTGGTAAAC 174
Query 149 AAACAACAACAACCAAG-GAAGGGGAGTCCCA-GATGATATTGTTGATGGATTACAATCT 206
| ||||| ||| |||| |||| ||| | | | |||| | | ||||| ||| ||||
Sbjct 175 CAGCAACAGCAA-CAAGAGAAGAGGA-TTCTATGATGGTCGCGATGATGAATTTTGATCT 232
Query 207 TTATTTGATTA--G-CGTTGTTGTCGATGGTGATCCGTATATAGAGTGTAAAGGTAAACT 263
||||| || | | ||| |||| ||| | |||||| | ||||| || |||| ||||||
Sbjct 233 TTATTCAATGAGGGTCGTAGTTGACGACGTTGATCCATCTATAGCGTTTAAACGTAAAC- 291
Query 264 TACTTGGTTAAACAATT-CAGAACAAGT-AGAGATATCTCAAGTCATTCATTTTGAGGGC 321
| | ||| | || ||||||||| | || ||||||||||| |||| | ||||||
Sbjct 292 --C-TAGTT--TC-CTTGAAGAACAAGTCA-AGGTATCTCAAGTCTTTCACTGTGAGGGT 344
Query 322 TTAATGTTGTGCATATTaaaaaaaaGATACT-AGGCTTGTGGTTTGGAATCCGTATTG-G 379
||| || | ||||| || ||| | | ||||| ||| |||||||||||||||||||||| |
Sbjct 345 TTATTGCTATGCATCTTCAAAGACA-ATACTAAGG-TTGTGGTTTGGAATCCGTATTGCG 402
Query 380 GGGCTAACAAGGTGGATCGAACCCAGGTATTCCCA-CCACCTAATCGGATGCGCA-AGGT 437
||| |||||||||||||||||| || | ||| || | || || || || | | ||||
Sbjct 403 GGG-AAACAAGGTGGATCGAACCAAGATTTTCTCATCGTCC-AAGGGGGTG-GGACAGGT 459
Query 438 TCAGTTACGCTCTTGGATACGTGGGTAA--TATCTCATGTCG-TAGCCACAAATTATTGA 494
||||||| ||||| |||||| || ||| |||| ||| | |||| ||||| ||||
Sbjct 460 TCAGTTATGCTCTAGGATACAAGGATAAGGAATCT--TGT-GATAGCTTTAAATTCTTGA 516
Query 495 GGTTTATAGATTATTTCTTCCATGGA-CC-----TGAGTTAGAATGGTATGAAATCTATG 548
|||| ||||||||||||| | || | || | | || ||||||||||||||||
Sbjct 517 GGTTCATAGATTATTTCTGCTTTGCACCCGAAAATCAATTTTTTTGGTATGAAATCTATG 576
Query 549 ATTTCGAGTCTGGTTTATGGACGACTCTTGATGTCACTCCACACTGGTGTAT-ATCTCTT 607
|||| || |||| || |||||| |||||||||||||||||| |||||||||| || | ||
Sbjct 577 ATTTTGACTCTGATTCATGGACAACTCTTGATGTCACTCCAAACTGGTGTATAATGT-TT 635
Query 608 GGTAGCCATGGCA-TATCTATTAAAGGAAACACTTATTGGAGTGCT-ATTACAAGAAACT 665
| || || ||| | || || | |||||||||||||| ||| ||||| | ||| ||||
Sbjct 636 GCTAACCTTGGTATTA-CTCTCAAAGGAAACACTTACTGGTGTGCTGGGGA-AAGGAACT 693
Query 666 CACGCAGCCACGGATTGACCATATATGATCATGACCACATAATCTGTTTTGATTTTACAA 725
|| | | | || || |||| || | || |||||||||||||||||||||||||
Sbjct 694 CA-G-A---A--GA-TG---ATAT-TG--C-CGATCACATAATCTGTTTTGATTTTACAA 738
Query 726 GCGAGAGATTTGGACCGCTTCTGCCTCTACCGT-TAAACG-CTGAG-T-AT---TATGGC 778
|||||||||||||||||||| | ||||| ||| || || | | | | || ||||
Sbjct 739 GCGAGAGATTTGGACCGCTTTTACCTCTGCCGACTAG-CGTCAGGGATCATGAGTATGAA 797
Query 779 GATGTGATTTTATCTTCTGTTAAAGAAGAGAAGCTTGCGGTTTTACAACAGCAAAACCG- 837
|||||| |||||||| ||||| |||||||||||||| | |||| ||||| ||| |
Sbjct 798 TATGTGACTTTATCTTGTGTTAGGGAAGAGAAGCTTGCAGCTTTATTTCAGCACAAC-GA 856
Query 838 -TGCGAATCCATAT-ATGTTTGATATATGGATTACAATTAATATTGA-GCCTGGCCATG- 893
| | ||||| ||| | | |||| ||||||||||||| | | ||| | ||| | |||
Sbjct 857 AT-CAAATCCGTATGA-GCTTGAGATATGGATTACAACTGAGATTAATGCC-GAA-ATGG 912
Query 894 TGTTATGGACCAAGTTCTTGAA-AGTGGATAT-GGAAACT-GTAATGGAAACTCCATTTA 950
||| |||| ||||||||||| | |||||| ||| || | | | || |||| |||
Sbjct 913 TGTCGTGGAGCAAGTTCTTGATGA-TGGATACCGGAC-CTAGGA-TAGAGGTTCCACTTA 969
Query 951 AAAGTAGTGAAAGTTTCTTCATTGATGAGAAAAACA-AAATTGTCATGAGTTTTGATGAA 1009
| | | ||| ||||||||||||| ||| | || | ||| | |||| ||||||| |||
Sbjct 970 TATG--G-GAAGGTTTCTTCATTGACGAGGAGAAGAGAAAC-GCCATGGGTTTTGACGAA 1025
Query 1010 -ACGTTAAATCCTTACACAATTAGCATTTTTGGAGAGGCTGGATAC-TATAGAGTAGTGA 1067
| ||| | || | | ||| ||| ||| ||||||||||||||||| || ||| | ||
Sbjct 1026 GA-GTTCAGTCGTAAAACATTTATCATCATTGGAGAGGCTGGATACGTA-AGAAAATTGG 1083
Query 1068 ATCTCGAGCAACATGCCAACACATGGTCTAGGTCACAAA-TGTGCACTTATGTTCCAAGT 1126
|| | | | | | | || | || ||| | || ||| ||||| ||||||||||||||
Sbjct 1084 ATATTG-G-AGTA-GACAT-AGATTGTCGAC--CA-AAAGTGTGCTCTTATGTTCCAAGT 1136
Query 1127 TTATTGCAAATCAAGCAAC 1145
|| | ||||||||| |||
Sbjct 1137 TTGGTCCAAATCAAGAAAC 1155
> Ahg905435 jgi|Araly1|905435|Al_scaffold_0003_2563
Length=993
Score = 333 bits (180), Expect = 2e-90
Identities = 571/751 (76%), Gaps = 62/751 (8%)
Strand=Plus/Plus
Query 163 AAGGAAGGGGAGTCCCAGATGAT-ATTGTTGATGGATTACAATCTTTATTTGATTAGCGT 221
|||||||| |||| |||||||| | ||||||||| ||||||||||||||| | ||| |
Sbjct 25 AAGGAAGGTGAGTTTCAGATGATCA-TGTTGATGGGTTACAATCTTTATTTAACGAGCAT 83
Query 222 TGTTGTCGATGGTGATCCGTATATAGAGTGTAAAGGTAAACTTACTTG-GTTAAACAATT 280
||| | |||| ||||| | ||||||| |||||| ||||||||||| || |
Sbjct 84 CGTTCTTAATGGAGATCCATCTATAGAGCATAAAGGCAAACTTACTTGCCTT----GA-- 137
Query 281 CAGAACAAGT-AGAGATATCTCAAG-TCAT-TCATTTTGAGGGCTTAATGTTGTGCATAT 337
|| ||||||| | ||||||||| || || | ||| | ||||| ||| || | |||||||
Sbjct 138 CA-AACAAGTCA-AGATATCTC-AGCTC-TATCACTGCGAGGGTTTATTGCTATGCATAT 193
Query 338 TaaaaaaaaGATACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCTAACAAGGTGGATC 397
| ||| ||||| ||||| |||||||| |||||| | || ||||| |||||||||||||
Sbjct 194 T-GAAAGAAGATTCTAGGTTTGTGGTTCAGAATCCATTTTTGGGGCAAACAAGGTGGATC 252
Query 398 GAACCCAGGTATTCCCA-CCACCTAATCGGATGCGCA-AGGTTCAGTTACGCTCTTGGAT 455
||||| || |||||||| | || || |||||| | | ||||| | ||||||||| ||||
Sbjct 253 GAACCAAGATATTCCCATCGTCC-AAACGGATG-GGATAGGTTTATTTACGCTCTCGGAT 310
Query 456 ACGTGGGTAA--TATCTCATGTCGTAGCCACAAATTATTGAGGTTTATAGATTATTTCTT 513
||||| ||| |||| ||||||||| |||| || ||||||||||||||||||| | |
Sbjct 311 ACGTGAATAAGGAATCT--TGTCGTAGCTACAAGTTTTTGAGGTTTATAGATTATTAC-T 367
Query 514 CCATGG-A-CC----TG-AGTTAGAATGGTATGAAATCTATGATTTCGAGTCTGGTTTAT 566
|| || | || | |||| |||||||||||||| ||||| || |||| |||||
Sbjct 368 ACAAGGCACCCGAAAAGCAGTTCTTTTGGTATGAAATCTACGATTTTGACTCTGATTTAT 427
Query 567 GGACGACTCTTGATGTCACTCCACACTGGTGTATATC-TCTTGGTAGCCATGGCATATCT 625
||||||||||||||||||||||||| ||| ||||| | | ||| || || |||| | |||
Sbjct 428 GGACGACTCTTGATGTCACTCCACATTGGCGTATAGCATTTTG-TAACCCTGGCGTGTCT 486
Query 626 ATTAAAGGAAACACTTA-TTGGAGTGCTATT-ACAAGAAAC-TCACGCA-GCCACGGATT 681
|||| ||||||||||| || ||||| | | ||| ||| | | | | | | | ||
Sbjct 487 CTTAAGGGAAACACTTACTTTT-GTGCTGCTGA-AAGGAACGT-A-G-ATGT-A-G-AT- 537
Query 682 GACCATATATGATCA-TGACCACATAATCTGTTTTGATTTTACAAGCGAGAGATTTGGAC 740
|| | | || || | | | |||||||||| ||||||||||| ||||||||||| |
Sbjct 538 GAAG-TCT-TGGCCAAT-AGCT--TAATCTGTTTCGATTTTACAAGTGAGAGATTTGGTC 592
Query 741 CGCTTCTGCCTCTACCGTTAAACGCTGAGTATTATGGCGATGTGATTTTATCTTCTGTTA 800
||||||||||||| ||||| | | || | || ||| || ||| ||| |||| |||||
Sbjct 593 CGCTTCTGCCTCTGCCGTTTAGTGGTGGGCATCATGATTATATGACTTTGTCTTGTGTTA 652
Query 801 AAGAAGAGAAGCTTGCGGTTTTACAACAGCAAAACCG--TGCGAATCCATAT-ATGTTTG 857
||||||||||||||||||||||| ||||| | | | | ||||||||| | | |||
Sbjct 653 GAGAAGAGAAGCTTGCGGTTTTACTTCAGCACGAT-GAAT-CAAATCCATATGA-GCTTG 709
Query 858 A-TATATGGATTACAATTAATATTGAGCCTG 887
| | | |||||||| | ||| |||||| |||
Sbjct 710 ACT-TGTGGATTACGACTAAGATTGAGACTG 739
> Ahg314297 jgi|Araly1|314297|fgenesh1_pm.C_scaffold_1003077
Length=1167
Score = 108 bits (58), Expect = 1e-22
Identities = 173/226 (77%), Gaps = 18/226 (8%)
Strand=Plus/Plus
Query 698 GACCACATAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCTTCTGCCTCTACCG 757
|| ||||| || ||||||||||||||||| |||||||||||||||||| ||||| | ||
Sbjct 688 GATCACATTATTTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTTTGCCTTTGCCA 747
Query 758 TTAAACGCT-GAGTATTATGGCGATGTG--ATTTTATCTTCTGTTAAAGAAGAGAAGCTT 814
|| | || | | | || || | ||||| |||||||||| ||||| |||||||||||||
Sbjct 748 TTTAGCGTTAGGG-ATCATT-C-ATGTGTGATTTTATCTTGTGTTAGAGAAGAGAAGCTT 804
Query 815 GCGGTTTTA---CAACAGCAAAACCGTGCGAATCCATAT-ATGTTTGATATATGGATTAC 870
|| |||||| ||||| |||| || | | |||| | ||| || |||||||||||
Sbjct 805 GCAGTTTTATTTCAACACCAAAT--GTATTA-TAAATATGAAGTT-GAAATATGGATTAC 860
Query 871 AATTAATATTGAG-CCTGGCCATG-TGTTATGGACCAAGTTCTTGA 914
|||| ||||| || | ||| ||| |||| |||||||||||
Sbjct 861 GGTTAAGCTTGAGACC-GAA-ATGGTGTCGTGGAGCAAGTTCTTGA 904
> Ahg317222 jgi|Araly1|317222|fgenesh1_pm.C_scaffold_3000238
Length=639
Score = 106 bits (57), Expect = 4e-22
Identities = 136/171 (80%), Gaps = 17/171 (10%)
Strand=Plus/Plus
Query 348 ATACTAGGCTTGTGGTTTGGAATCCGTATTGGGGGCTAACAAGGTGGATCGAACCCAGGT 407
||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||
Sbjct 113 ATACTAGGCTTGTGGTTTGGAATCCGTATTGCGGGCAAACAAGGTTGATCGAACTCAGGT 172
Query 408 ATTCCCAC--CACC-T-AATCGGA-TGCG-CAAGGTTCAGTTACGCTCTT-GGATACGTG 460
|||| || | || | || ||| || | || | | |||||||||| || |||||||||
Sbjct 173 ATTCTTACATCTCCGTGAA--GGAATGTGACACG-TGCAGTTACGCT-TTCGGATACGTG 228
Query 461 G-GTA-AT-ATC---TCATGTCGTAGCCACAAATTATTGAGGTTTATAGAT 505
| | | | | | || ||||||| ||||||| | |||||||||| ||||
Sbjct 229 GAGAAGAAGAACAAATCTTGTCGTAACCACAAAATCTTGAGGTTTACAGAT 279
> Ahg929122 jgi|Araly1|929122|scaffold_301579.1
Length=1248
Score = 76.8 bits (41), Expect = 3e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 710 TGTTTTGATTTTACAAGCGAGAGATTTGGACCGCTTCTGCCTCTACCGTT 759
|||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 702 TGTTTTGATTTTACAAGCGAGAGATTTGGACCGCCTCTGCCACTGCCGTT 751
> Ahg930557 jgi|Araly1|930557|scaffold_303014.1
Length=643
Score = 75.0 bits (40), Expect = 1e-12
Identities = 97/123 (79%), Gaps = 10/123 (8%)
Strand=Plus/Plus
Query 705 TAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGC-TTCTGCCTCTACCGT-TAAA 762
||||||||||||||||||||||||||||||||||||||| || || || | |||| | |
Sbjct 157 TAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCATT-TGTCTATGCCGTATGA- 214
Query 763 CGCTG-AGTATT-ATGGCGA-TGTGATTTTATCTTCTGTTAAAGAAGAGAAGCTTGCGGT 819
| || | | || | || | || || | ||||| ||| ||||||||| ||||||| ||
Sbjct 215 -GTTGTATT-TTGAAGGT-ACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCAGT 271
Query 820 TTT 822
|||
Sbjct 272 TTT 274
> Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001
Length=1047
Score = 75.0 bits (40), Expect = 1e-12
Identities = 97/123 (79%), Gaps = 10/123 (8%)
Strand=Plus/Plus
Query 705 TAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGC-TTCTGCCTCTACCGT-TAAA 762
||||||||||||||||||||||||||||||||||||||| || || || | |||| | |
Sbjct 581 TAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCATT-TGTCTATGCCGTATGA- 638
Query 763 CGCTG-AGTATT-ATGGCGA-TGTGATTTTATCTTCTGTTAAAGAAGAGAAGCTTGCGGT 819
| || | | || | || | || || | ||||| ||| ||||||||| ||||||| ||
Sbjct 639 -GTTGTATT-TTGAAGGT-ACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCAGT 695
Query 820 TTT 822
|||
Sbjct 696 TTT 698
> Ahg925199 jgi|Araly1|925199|scaffold_200760.1
Length=1195
Score = 60.2 bits (32), Expect = 3e-08
Identities = 54/65 (83%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 539 GAAATCTATGATTTCGAGTCTGGTTTATGGACGACTCTTGATGTCACTCCACACTGGTGT 598
|||||||| || || | ||| || ||||| | |||||||||||||||||||||||||
Sbjct 570 GAAATCTACGAATTAAACTCTAATTCATGGAGGGTTCTTGATGTCACTCCACACTGGTGT 629
Query 599 ATATC 603
|||||
Sbjct 630 ATATC 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44794427475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5