BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04740.1
Length=1879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480104 jgi|Araly1|480104|fgenesh2_kg.3__2805__AT2G04740.1 2728 0.0
> Ahg480104 jgi|Araly1|480104|fgenesh2_kg.3__2805__AT2G04740.1
Length=1785
Score = 2728 bits (1477), Expect = 0.0
Identities = 1686/1787 (94%), Gaps = 13/1787 (1%)
Strand=Plus/Plus
Query 14 AAAATGTCTCCAATTGAGAATTCCTCATCTTGGACACTCGAATCCGACCTAGAAGATCTA 73
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAATGTCTCCAATTGAGAATTCCTCATCTTGGACACTCGAATCCGACCTAGAAGATCTC 60
Query 74 GACCTCGACCTCCAAGACTACAAACCATCCGTACCATTAAAGAAAGTCCCAAACGGAGAC 133
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GACCTTGACCTCCAAGATTACAAACCATCCGTACCATTAAAGAAAGTACCAAACGGAGAC 120
Query 134 ATTTTCGAAGCCTCACGCGCCGGTGACGTCGATAGACTCCGGTACCTTGTTGAAACCGGA 193
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 ATTTTCGAAGCTTCACGCGCCGGTGACGTCGATAGACTCCGGTACCTTCTTGAAACCGGA 180
Query 194 GTCAACGTCAACGCACGTGACCGTTGGGACTCTGTTGCTCTTTACTACGCTTGTCTCGCT 253
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTAACGTCAACGCACGTGACCGATGGGACTCTGTTGCTCTTTACTACGCTTGTCTCGCT 240
Query 254 GGTCACATAGACTCTGCTCGATTGCTTCTAGAGAACGGTGCGATTTGCTCTGAACATACT 313
||||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 241 GGTCATATTGACTCTGCTCGATTGCTTTTAGAGAATGGTGCGATTTGCTCTGAACATACT 300
Query 314 TTTGATGGTGATCGTTGTCATTATGCTTCTCTTAATTTAAGGATTCGGAAGCTTCTGAAG 373
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 301 TTTGATGGTGATCGTTGTCATTATGCTTCTCTTAATTTAAGGATTAGGAAGCTTCTTAAG 360
Query 374 GCTTTTGAAGCTCGTCCTCCTCCTCTTGCTCCTTTGCAAGCTTCTCTTAGAGATACCTTT 433
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 361 GCTTTTGAAGCTCGTCCTCCTCCTCTTGGTCCTTTGCAAGCTTCTCTTAGAGATACGTTT 420
Query 434 TTGGGATGTTGTCATAATCGAGATTATCTT-CAACAAGAA------GAAG---CTAATCT 483
||||||||||||||||||||||||||| || |||||||| || | |||||||
Sbjct 421 TTGGGATGTTGTCATAATCGAGATTAT-TTGAAACAAGAAGCTTTTGATGCTACTAATCT 479
Query 484 TGATGTCTCTGATACTCTGAGTGAGTTTGGTAGTTCGAATTACTTTCCACCGGATGTGAT 543
|||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TGATGTTTCTGATAATCCGAGTGAGTTTGGTAGTTCGAATTACTTCCCACCGGATGTGAT 539
Query 544 GTTCTATGTGCAAGGTAGACCTATTGAAGCACACAGGGTTATCTTAAGTGCTCGATCTCC 603
||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GTTCTTTGTGCAAGGTAGACCAATTGAGGCACACAGGGTTATCTTAAGTGCTCGATCTCC 599
Query 604 GTTTTTCAAGCAGAAGTTTGAGAATGAATGGAAAGACCGGAGAGAAGTTCGGTTTTCGAA 663
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 600 ATTTTTCAAGCAGAAGTTTGAGAATGAATGGAAAGACCGGGGAGAAGTTCGGTTTTCGAA 659
Query 664 AGAGAAGCTTTCGTATCCTGCTCTCTGTAGTCTTATTCACTTCTTTTATTCAGATAGGTT 723
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||
Sbjct 660 AGAGAAGCTTTCGTATCCTGCTCTCTGTAGCCTTATTCACTTTTTTTACTCAGGTAGGTT 719
Query 724 GGAGATATCTGTTGATGATATGGAAGATCTTGTTAGGATTTGCAAAGTTTGTAAATGTGA 783
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 GGAGATATCTGTTGATGATATGGAAGATCTTGTTAGGATCTGCAAAGTTTGTAAATGTGA 779
Query 784 ATCACTGCAGAAAATCATTGAGAAGGAACTGATTCACCAG-AGATATGCTGAGTATAAGA 842
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 780 ATCACTGCAGAAAATCATTGAGAAGGAACTGATTCACCAGAAG-TATGCTGAGTACAAGA 838
Query 843 CTCATAGAGATCTTGATAACTCCATGAAACGGTTTATCTTACAGGGTATATCACTTCCAG 902
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 839 CTCATAGAGACCTTGATAACTCCATGAAACGGTTCATCTTACAGGGCATATCTCTTCCAG 898
Query 903 AGGAAGACAGGCTTCCTGCTTCTTTGCATAGGATTCTTCGAGTTTCACTAGCGAAATCGT 962
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 899 AGGAAGACAGGCTTCCTGCTTCTTTGCATAGGATTCTTCGAGTTTCCCTTGCGAAATCGT 958
Query 963 TTGTTGGTGATGTAATAGATTCATCTGTTGGGGATACGAGAGTTGGTGATTCTGTGGAAA 1022
|||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| |
Sbjct 959 TTGTTGGTGATGTAATAGATTCATCTGTTGGGGATATGAGAGTCGGAGATTCTGTGGATA 1018
Query 1023 GTCTTGCTGATGTTTGTGTTAGAGTTGATAAAAGAAATTTCTACTGCCATCAAGTTATTC 1082
||||||||||||||||||||| |||||||||| ||| |||||| ||||||||||||||||
Sbjct 1019 GTCTTGCTGATGTTTGTGTTAAAGTTGATAAACGAACTTTCTATTGCCATCAAGTTATTC 1078
Query 1083 TAGCTTCAAGATCAGAGTACTTCAGAGCACGATTATCACGAGTGAATGATTTTCATGAGG 1142
||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 1079 TAGCTTCGAGATCAGAGTACTTCAGAGCACGATTATCCCGAGTAAATGATTTCCATGAGG 1138
Query 1143 GGAAGAATGGTTTGCCGGGTGATACTCTTCCATTTCTTGAAGAACATGATTTGAGTGCAG 1202
| || ||||| |||| ||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 1139 GAAAAAATGGGTTGCTGGGTGATACTCTTCCATATCTCGAAGAACATGATTTGAGCGCAG 1198
Query 1203 AGGCTTTTGAGAAGATGATTGAGTATATGTACACTGATGGCTTAAAGGAGATCAATCCGA 1262
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1199 AGGCTTTCGAGAAGATGATTGAGTATATGTACACTGATGGCTTAAAGGAGATCAGTCCGA 1258
Query 1263 ATCAGGCTGAGGAGATCTTTGATGTTGCATCTCGCTACTTGCTGTTTCCGCTTAAACGTG 1322
||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||
Sbjct 1259 GTCAGGCTGAGGAGATCTTTGATGTTTCATCTCGCTACTTGCTATTTCCGCTAAAACGTG 1318
Query 1323 CTGTGGCTGACGCCTTGTTGCCTCACTTGGAAACTGCCACACCTGCAGAACTCTGTCAAT 1382
||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| |
Sbjct 1319 CTGTGGCTGACGCCTTGTTACCTCACTTGGAATCTGCGACACCTGCAGAACTCTGTCAGT 1378
Query 1383 GGCTGGTTTTGTCAGATATGTACGGAGTGTTGAAGATAAGAGAGTACTGCCTGGACTTGG 1442
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 1379 GGCTGGTTTTGTCAGATATGTACGGCGTATTGAAGATAAGAGAGTACTGCCTAGACTTGG 1438
Query 1443 TTGCTTGTAATTTTGAGGCATTTGTTGAAACCCACGAGTTCAGGGCAATGTTATTAACAT 1502
||||||||||||| ||||||||||||||||||| ||||||||| |||||| |||||||||
Sbjct 1439 TTGCTTGTAATTTCGAGGCATTTGTTGAAACCCGCGAGTTCAGAGCAATGCTATTAACAT 1498
Query 1503 TGCCTCCACCATCAGGAGACTCTTCACTTCGAACCACTGTTCCAAGTGCACCAGGTGCCA 1562
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1499 TGCCTCCACCATCAGGAGACTCTTCACTTCGAACCACAGTTCCAAGTGCACCAGGTGCCA 1558
Query 1563 TGATGACCACAGACCAAGGGAATCTCCTTGATGATCTGAGAGAGAAGTGGCTTGAAGCAG 1622
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TGATGACCACGGACCAAGGGAATCTCCTTGATGATCTGAGAGAGAAGTGGCTTGAAGCAG 1618
Query 1623 AGGCTTTAGAGCTTGACATGAGAGACGAGAGTGCTTTGATTTTCGATAAGCGCCTTGCAA 1682
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1619 AGGCTTTAGAGCTTGACATGAGAGACGAGAGTGCTTTGATTTTTGATAAGCGCCTTGCTA 1678
Query 1683 TGCTTGTGGAAATAGCAGAGCGAGAGAAATCCGAATCAGAAGCTGAGGACTACAAAGACA 1742
|||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1679 TGCTCGTGGAAATGGCAGAGCGAGAGAAATCCGAATCAGAAGCTGAGGACTATAAACACA 1738
Query 1743 CCAGCGCATGATTATTGGTTTTTCTAAAAACAAGTTTTGAGTCTCTT 1789
||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct 1739 ACAGCGCATGATTATTGGTTTTCCTTAAGACAAGTTTTGACTCTCTT 1785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581223985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5