BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04750.1
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319280 jgi|Araly1|319280|fgenesh1_pm.C_scaffold_3002296 3099 0.0
Ahg493629 jgi|Araly1|493629|fgenesh2_kg.7__3062__AT5G35700.1 1655 0.0
> Ahg319280 jgi|Araly1|319280|fgenesh1_pm.C_scaffold_3002296
Length=1962
Score = 3099 bits (1678), Expect = 0.0
Identities = 1872/1966 (95%), Gaps = 11/1966 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAGTTACGTTGGTGTTCTTGTCTCTGATCCATGGCTACAAAGCCAATTCACACAA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGTCTAGTTACGTTGGTGTTCTTGTCTCTGATCCATGGCTACAGAGCCAATTCACACAA 60
Query 61 GTGGAGTTACGCACTCTTAAATCCAAGTTTTATTCGACAAAAACTCGATTCGGTCGTGTC 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GTGGAGTTACGCACTCTTAAATCCAAGTTTTATTCGACAAAAACTCGATTTGGTCGTGTT 120
Query 121 ACTGTGAAACATTTACCACCAGTGTTTGCAAAGTTGAAATATTTCAATGGCAAGTTTGAT 180
|||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||||||
Sbjct 121 ACTGTGAAACATTTACCACCAGTGTTAGCAAAATTGAAAGATTTCAGTGGCAAGTTTGAT 180
Query 181 GAAAATGAGATCAAAACTATATTGGATGAGTCTTATCCCAATCGCGCTAAGGAAGTTGAA 240
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 GAAAATGAGATCAAAACTATATTGGATGAGTCTTACCCCAATCGCGCTAAGGAAGTTGAG 240
Query 241 TTCGAAACCTTTCTCCGGGCCTTTTTAAGTGTGCAATCCCGAGGATCAAAAGGCGCTTCA 300
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCGAGACCTTTCTTCGGGCCTTTTTAAGTGTGCAATCCCGAGGATCAAAAGGCGCTTCA 300
Query 301 TCGTTTCTCAAGACAAGTA-CTACAACGTTCCATCACT-CGATAAACGAATCCGAGAAAG 358
|||||||||||||| || | |||||||||||||||| | |||| || |||||||||||||
Sbjct 301 TCGTTTCTCAAGAC-AGGAGCTACAACGTTCCATCA-TGCGATCAATGAATCCGAGAAAG 358
Query 359 CTTCATATGTGTCACATATCAATAGTTATTTGAAAGATGAACCTAACTTGAAGAGCTATC 418
|||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 359 CTTCCTATGTGTCCCATATCAATAGTTATTTGAAAGAAGAACCTCTCTTGAAGAGCTATC 418
Query 419 TTCCAATCAACCCTACTACAAATGCTTTGTTTGATCTTGTTAAAGATGGTGTTCTTTTGT 478
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 419 TTCCAATCAATCCTGCTACAAATGCTTTGTTTGATCTTGTTAAAGATGGTGTTCTTCTGT 478
Query 479 GTAAGCTTATAAACATCGCTGTGCCTGGGACTATAGACGAAAGAGCGATAAACACAAAGA 538
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 479 GTAAGCTTATAAACATAGCTGTGCCTGGGACGATAGACGAAAGAGCGATAAACACGAAGA 538
Query 539 AAGAACTTAATCCATGGGAAAGAACTGAAAATCTTTCACTATGTCTCAACTCTGCTAAGG 598
|||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 539 CAGAACTTAATCCATGGGAGAGAACTGAAAATCTTTCACTCTGTCTCAACTCGGCTAAGG 598
Query 599 CAATTGGCTGCACTGTAGTCAACATTGGAACTCAGGACATTGCTGAAGGAACACCACATC 658
| || |||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 CGATAGGCTGCACCGTCGTCAACATTGGAACTCAGGACATTGCTGAAGGAACACCCCATC 658
Query 659 TTGTACTAGGGTTGATCTTTCAGATTATAAAGATCCAATTGTTGGCTGATCTCAATCTTA 718
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 659 TTGTACTTGGGTTGATCTTTCAGATTATAAAGATCCAATTGCTGGCTGATCTCAATCTTA 718
Query 719 AGAAAACTCCACAACTTGTTGAGTTGGTGGAAGAAAACCAGGATGTGGAGGAGCTTATGG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGAAAACTCCACAACTTGTTGAGTTGGTGGAAGAAAACCAGGATGTGGAGGAGCTTATGG 778
Query 779 GACTAGCTCCTGAGAAACTTTTGCTAAAATGGATGAATTTTCATCTTAAGAAAGCTGGTT 838
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 GACTAGCTCCTGAGAAACTTTTGCTAAAATGGATGAATTTTCATCTCAAGAAAGCTGGTT 838
Query 839 ATGAGAAACAAGTAACCAATTTCTCTTCTGATGTTAAGGATGGAGAGGCATATGCATACC 898
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 ATGAGAAACAAGTAACCAATTTCTCTTCTGATGTTAAGGATGGAGAAGCATATGCATACC 898
Query 899 TGCTCAATGCTTTAGCTCCAGAACACAGTACAAATGTCACATTAGAGATTAAAGACCCTT 958
||||||||||| |||| ||||||||||| ||| |||| ||||||||||| ||||||||||
Sbjct 899 TGCTCAATGCTCTAGCACCAGAACACAGCACACATGTGACATTAGAGATCAAAGACCCTT 958
Query 959 CAGAAAGAGCGACGAAGGTTCTTGAGCAAGCAGAGAAGCTGGACTGTAAAAGATTCCTTT 1018
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 CAGAAAGAGCGATGAAGGTTCTTGAGCAAGCAGAGAAGCTGGATTGTAAAAGATTCCTTT 1018
Query 1019 CTCCTAAAGATATAGTTGAAGGCTCTGCAAATCTTAATCTTGCATTTGTGGCACAACTGT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTCCTAAAGATATAGTTGAAGGCTCTGCAAATCTTAATCTTGCATTTGTGGCACAACTGT 1078
Query 1079 TTCACCACAGGAATGGATTGTCTGATGAGAGTCCAAAGGTGCCTATCTCTGTTGCTGAGA 1138
|||||||||||||||| ||||||||||||||| |||||| |||| |||||||| ||||||
Sbjct 1079 TTCACCACAGGAATGGGTTGTCTGATGAGAGTTCAAAGGGGCCTGTCTCTGTTACTGAGA 1138
Query 1139 TGGTCACAGAAGATGAAGAAACTTCTCGAGAAGAAAGATGCTTTCGCCATTGGATGAACA 1198
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1139 TGGTCACAGAAGATGATGAAACTTCTCGAGAAGAACGATGCTTTCGCCATTGGATGAACA 1198
Query 1199 GTCTCGGTGCTGTGACTTATGTCGATAATGTTTTCGAGGATGTTAGAAATGGATGGGTTC 1258
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GTCTTGGTGCTGTGACTTATGTCGATAATGTTTTCGAGGATGTTAGAAATGGATGGGTTC 1258
Query 1259 TTCTTGAAGTTCTTGACAAAGTATCACCAGGCTCGGTCAACTGGAAGCACGCGAATAAAC 1318
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1259 TTCTTGAAGTTCTTGACAAAGTATCGCCAGGCTCGGTCAACTGGAAGCACGCGAATAAAC 1318
Query 1319 CTCCCATTAAAATGCCATTCAAGAAGGTTGAGAATTGTAACCAAGTTATCAAGATTGGGA 1378
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1319 CTCCTATCAAAATGCCATTCAAGAAGGTTGAGAACTGTAACCAAGTTATCAAGATTGGGA 1378
Query 1379 AAGAATTGAACTTCTCGCTTGTCAATGTAGCTGGTCATGACATTATGCAAGGAAACAAGA 1438
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1379 AAGAATTGAACTTCTCGCTTGTCAATGTAGCTGGCCATGACATTGTGCAAGGAAACAAGA 1438
Query 1439 AGCTACTTCTCGCTTTTTTGTGGCAGTTGATGAGATACACAATGCTCCAAATCCTGAACA 1498
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1439 AGCTCCTTCTCGCTTTTTTGTGGCAATTGATGAGATACACAATGCTCCAAATCCTGAACA 1498
Query 1499 ACTTGAGGTCTCACTGCCAAGGTAAAGATATCACAGAGGCAGATATTCTAAACTGGGCAA 1558
||||||| |||||||| ||||||| |||||| ||||||||||||||||| ||||||||||
Sbjct 1499 ACTTGAGATCTCACTGGCAAGGTAGAGATATTACAGAGGCAGATATTCTGAACTGGGCAA 1558
Query 1559 ATAGGAAAGTCAAGAAAA-GTGGTCGAACCTCTCAAGCTGTGAGCTTCAAGGACAAGAAT 1617
||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||
Sbjct 1559 ATAGGAAAGTCAAGAAATCG-GGTCGACCCTCTCAAGCAGTGAGCTTCAAGGACAAGAAT 1617
Query 1618 CTGGCAAATGGAATCTTCTTTTTAGAGCTTTTGAGTGCTGTAGAGCCAAGAGTTGTAAAC 1677
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1618 CTGGCAAATGGAATCTTCTTTTTGGAGCTTTTGAGTGCCGTAGAGCCAAGAGTTGTAAAC 1677
Query 1678 TGGAGTCTTGTATCCAAAGGAGAAACA-CA-A-GAGGAAAAGAATTTGAATGCAACATAC 1734
||||||||||| ||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 1678 TGGAGTCTTGTCTCCAAAGGAGAAACAGCAGAAGAGGAAAAGAATTTGAATGCAACATAC 1737
Query 1735 ATCATAAGTGTTGCAAGGAAGCTTGGATGCTCAATCTTCTTGCTGCCTGAGGATATTTTA 1794
||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 1738 ATCATAAGTGTTGCAAGGAAGCTCGGATGCTCAATCTTCTTGTTGCCTGAAGATATTTTA 1797
Query 1795 GAGGTAAACCAGA-GAATGATGCTTATATTAGCTGCTAGTATCATGAACTGGAGCCTTCA 1853
|||||||| |||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1798 GAGGTAAATCAGAAGA-TGATGCTTATATTAGCTGCTAGCATCATGAACTGGAGCCTTCA 1856
Query 1854 GCAACAATCAGACACTGAATCTACTGTCTCGGATGATACTGACGTAAGCTCTGTGACCGA 1913
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1857 GCAACAATCAGACACCGAGTCTACTGTCTCGGATGATACTGACGTAAGCTCTGTGACAGA 1916
Query 1914 AGAGATCTCCAATTTGTCGACAGACGATGGATCTTCAGATGTTTAA 1959
|||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1917 AGAGATCTCCAATTTGTCCACAGACGATGGATCTTCAGATGTCTAA 1962
> Ahg493629 jgi|Araly1|493629|fgenesh2_kg.7__3062__AT5G35700.1
Length=2554
Score = 1655 bits (896), Expect = 0.0
Identities = 1594/1925 (83%), Gaps = 72/1925 (4%)
Strand=Plus/Plus
Query 1 ATGTCTAGTTACGTTGGTGTTCTTGTCTCTGATCCATGGCTACAAAGCCAATTCACACAA 60
||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct 201 ATGTCTAGTTACGTTGGTGTTCTTGTCTCTGATCCATGGTTACAGAGCCAATTTACACAA 260
Query 61 GTGGAGTTACGCACTCTTAAATCCAAGTTT-TATTCG-ACAAAAACTCGATTCG-GTCGT 117
||||| || || || |||||||| |||||| | |||| || ||||||| ||| | | |||
Sbjct 261 GTGGAATTGCGTACCCTTAAATCTAAGTTTGT-TTCGAAC-AAAACTCAATTAGAG-CGT 317
Query 118 GTCACTGT-GAAACATTTACCACCAGTGTT-TGCAAAGTTGAAATATTTCAATGGCAAGT 175
| ||||| | | |||||||||| ||||| | ||||||||||| ||| || || |
Sbjct 318 TTTACTGTCG-GAGATTTACCACCTGTGTTCT-CAAAGTTGAAAGCTTTTAACGGTACCA 375
Query 176 TTGATGAAAATGAGATCAAAACTATATTGGATGAGTCTTATCCCAATCGC-GCTAAGGAA 234
||||||| ||||||||||| || ||||||| |||||||| ||||| || | | | |||
Sbjct 376 TTGATGAGGATGAGATCAAATCTGTATTGGACAAGTCTTATTCCAAT-GCTGATGATGAA 434
Query 235 GTTGAATTCGAAACCTTTCTCCGGGCCTTTTTAAGTGTGCAATCCCGAGGA--T----CA 288
|| || || || |||||||||||||||||||||| ||||||| |||||||| | |
Sbjct 435 GTCGATTTTGAGACCTTTCTCCGGGCCTTTTTAAATGTGCAAGCCCGAGGAGTTGAAAAA 494
Query 289 A-A--AGG--C-----G--CTTCATCGTTTCTCAAGACAAGTACTACAAC-GTTCCATCA 335
| | ||| | | |||| || || ||||| || ||||||||||| ||| |||||
Sbjct 495 ACAGGAGGATCTAAAGGTTCTTCTTCATTCCTCAAAACCAGTACTACAACGGTT-CATCA 553
Query 336 CT-CGATAAACGAATCCGAGAAAGCTTCATATGTGTCACATATCAATAGTTATTTGAAAG 394
| | || || ||||||||||| ||||| ||||| || |||||||||| ||| |||| ||
Sbjct 554 -TGCCATCAATGAATCCGAGAAGGCTTCCTATGTTTCCCATATCAATAATTACTTGAGAG 612
Query 395 ATGAACCTAACTTGAAGAGCTATCTTCCAATC-AACCCTACTACAAATGCTTTGTTTGAT 453
|||| ||| |||||||||||||||||| ||| | ||| | || |||||||| ||||||
Sbjct 613 ATGATCCTTTCTTGAAGAGCTATCTTCCTATCGATCCC-GCAACTAATGCTTTCTTTGAT 671
Query 454 CTTGTTAAAGATGGTGTTCTTTTGTGTAAGCTTATAAACATCGCTGTGCCTGGGACTATA 513
|||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||
Sbjct 672 CTTGTTAAAGATGGTGTTCTTTTGTGTAAGCTTATAAATGTTGCTGTTCCTGGGACCATC 731
Query 514 GACGAAAGAGCGATAAACACAAAGAAAGAA-CTTAATCCATGGGAAAG-AACTGAAAATC 571
|| ||| |||| || |||||||||||| | ||||| |||||||| || || ||| || |
Sbjct 732 GATGAACGAGCTATCAACACAAAGAAA-ACGCTTAACCCATGGGAGAGGAA-TGAGAACC 789
Query 572 TTTCACTATGTCTCAACTCTGCTAAGGCAATTGGCTGCACTGTAGTCAACATTGGAACTC 631
|| | || ||||||| ||||| || || ||||||||||| || |||||||||||||| |
Sbjct 790 TTACTTTAGGTCTCAATTCTGCCAAAGCTATTGGCTGCACAGTGGTCAACATTGGAACAC 849
Query 632 AGGACATTGCTGAAGGAACACCACATCTTGTACTAGGGTTGATCTTTCAGATTATAAAGA 691
||||||| |||||||||| |||| |||| ||||| |||||||| | ||||||||||||||
Sbjct 850 AGGACATAGCTGAAGGAAGACCATATCTCGTACTTGGGTTGATATCTCAGATTATAAAGA 909
Query 692 TCCAATTGTTGGCTGATCTCAATCTTAAGAAAACTCCA-CAACTTGTTGAGTTGGTGGAA 750
||||| ||||||||||||||||| |||||||||| || | ||| || | ||||| ||
Sbjct 910 TCCAAATGTTGGCTGATCTCAATTTTAAGAAAACGCCTTCG-CTTTTTCAATTGGTAGAC 968
Query 751 GAAAAC-CAGGATGTGGAGGAGCTTATGGGACTAGCTCCTGAGAAACTTTTGCTAAAATG 809
|| | | ||||||| ||||||||| |||||||| ||||| || ||| |||||||||||||
Sbjct 969 GACA-CTCAGGATGCGGAGGAGCTCATGGGACTGGCTCCCGAAAAAGTTTTGCTAAAATG 1027
Query 810 GATGAATTTTCATCTTAAGAAAGCTGGTTATGAGAAA-CAAGTAACCAATTTCTCTTCTG 868
||||||||| ||||| ||||||||||||||||| ||| || || || ||||| |||||||
Sbjct 1028 GATGAATTTCCATCTAAAGAAAGCTGGTTATGA-AAAGCAGGTTACAAATTTTTCTTCTG 1086
Query 869 ATGTTAAGGATGGAGAGGCATATGCATACCTGCTCAATGCT-TTAGCTCCAGAACACAGT 927
|||| ||||| || |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct 1087 ATGTGAAGGACGGTGAGGCATATGCATATCTGCTTAATGCCCTT-GCTCCAGAACACAGT 1145
Query 928 ACAAATGTCACATTAGAGATTAAAGACCCTTCAGAAAGAGCGACGAAGGTTCTTGAGCAA 987
||| |||| |||| |||| |||||||| |||||||||||| ||||||||||||||
Sbjct 1146 ACACATGTGGCATTGGAGACCAAAGACCCCACAGAAAGAGCGAAAAAGGTTCTTGAGCAG 1205
Query 988 GCAGAGAAGCTGGACTGTAAAAGATTCCTTTCTCCTAAAGATATAGTTGAAGGCTCTGCA 1047
|| ||||||||||| |||||| ||| ||||||||| ||||| ||||| || ||||| |||
Sbjct 1206 GCTGAGAAGCTGGATTGTAAACGATACCTTTCTCCAAAAGACATAGTGGACGGCTCAGCA 1265
Query 1048 AATCTTAATCTTGCATTTGTGGCACAACTGTTTCACCACAGGAATGGATTGTCTGATGA- 1106
|||||||| |||||||||||||| ||| | ||||| ||||||||||||||| ||| |||
Sbjct 1266 AATCTTAACCTTGCATTTGTGGCGCAAATATTTCAGCACAGGAATGGATTGACTGTTGAC 1325
Query 1107 GAGTCCAAAGGTGCCTATCTCTGTTGCTGAGATGGTCACAGAAGATGAAGAAACTTCTCG 1166
|| || |||| | ||| | ||||||||||| | ||||| |||| |||||||| ||
Sbjct 1326 GATTC-AAAGA--C--ATCA-T-TTGCTGAGATGATGACAGATGATGTGGAAACTTCACG 1378
Query 1167 AGAAGAAAGATGCTTTC-GCCAT-TGGATGAACAGTCTCGGTGCTGTGACTTATGTCGAT 1224
|||||||||||| |||| ||| | ||||| |||||||| || | | ||||||||| ||
Sbjct 1379 AGAAGAAAGATG-TTTCCGCC-TCTGGATTAACAGTCTTGGCACAGCCACTTATGTCAAT 1436
Query 1225 AATGTTTTCGAGGATGTTAGAAATGGATGGGTTCTTCTTGAAGTTCTTGACAAAGTATCA 1284
|||||||| |||||| |||| ||||| |||||||||||||||||||| |||||||| |||
Sbjct 1437 AATGTTTTTGAGGATCTTAGGAATGGGTGGGTTCTTCTTGAAGTTCTCGACAAAGTTTCA 1496
Query 1285 CCAGGCTCGGTCAACTGGAAGCACGCGAATAAACCTCCCATTAAAATGCCATTCAAGAAG 1344
|| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||
Sbjct 1497 CCTGGCTCGGTCAACTGGAAACACGCAAATAAACCTCCCATAAAAATGCCATTCAAAAAG 1556
Query 1345 GTTGAGAATTGTAACCAAGTTATCAAGATTGGGAAAGAATTGAACTTCTCGCTTGTCAAT 1404
|||||||| || || ||||||| ||||||||||| ||| || ||| || |||||||||
Sbjct 1557 GTTGAGAACTGCAATGAAGTTATAAAGATTGGGAAGGAACTGCGCTTTTCCCTTGTCAAT 1616
Query 1405 GTAGCTGGTCATGACATTATGCAAGGAAACAAGAAGCTACTTCTCGCTTTTTTGTGGCAG 1464
|||||||| |||||||| |||||||||| ||||| || ||||||||||||||||||||
Sbjct 1617 GTAGCTGGGAATGACATTGTGCAAGGAAATAAGAAACTTCTTCTCGCTTTTTTGTGGCAA 1676
Query 1465 TTGATGAGATACACAATGCTCCAAATCCTGAACAACTTGAGGTCTCACT-GCCAAGGTAA 1523
| |||||||| |||||||||||| | ||||| |||||||| ||||||| || |||||||
Sbjct 1677 CTAATGAGATATACAATGCTCCAACTTCTGAAGAACTTGAGATCTCACTCGC-AAGGTAA 1735
Query 1524 AGATATCACAGAGGCAGATATTCTAAACTGGGCAAATAGGAAAGTCAAGAAAAGTGGTCG 1583
||| || ||||| | ||||||||| |||||||| ||||||||||| |||| | | || ||
Sbjct 1736 AGAAATTACAGATGTAGATATTCTTAACTGGGCGAATAGGAAAGTGAAGAGAGGGGGCCG 1795
Query 1584 AACCTC-TCAAGCTG-TGAGCTTCAAGGACAAGAATCTGGCAAATGGAATCTTCTTTTTA 1641
||| | ||| |||| | ||||||| ||||||||||||| ||| |||||| |||||| |
Sbjct 1796 AAC-TAGTCAGGCTGAT-AGCTTCAGGGACAAGAATCTGTCAAGTGGAATGTTCTTTCTG 1853
Query 1642 GAGCTT-TTGAGTGCTGTAGAGCCAAGAGTTGTAAACTGGAGTCTTGT-ATCCAAAGGAG 1699
|| ||| || ||||| ||||||||||||||||| |||||||| || || | |||| ||||
Sbjct 1854 GAACTTCTT-AGTGCGGTAGAGCCAAGAGTTGTCAACTGGAGCCTCGTTA-CCAATGGAG 1911
Query 1700 AAACACAAGAGGAAAAGAATTTGAATGCAACATACATCATAAGTGTTGCAAGGAAGCTTG 1759
||||| | || || ||||| |||||||| ||||||||||| ||||| ||| | ||||| |
Sbjct 1912 AAACAGAGGAAGATAAGAAGTTGAATGCCACATACATCATCAGTGTGGCACGAAAGCTCG 1971
Query 1760 GATGCTCAATCTTCTTGCTGCCTGAGGATATTTTAGAGGTAAACCAGA-GAATGATGCTT 1818
||||||| || |||||| | ||||||||||| ||||||| ||||||| || ||||||||
Sbjct 1972 GATGCTCCATATTCTTGTTACCTGAGGATATCATAGAGGTGAACCAGAAGA-TGATGCTT 2030
Query 1819 ATATTAGCTGCTAGTATCATGAACTGGAGCCTTCAGCAACAATCAGACACTGAATCTACT 1878
|| || || || || |||||| |||||||||| || |||||||||||||| || ||||||
Sbjct 2031 ATTTTGGCAGCCAGCATCATGTACTGGAGCCTCCAACAACAATCAGACACAGAGTCTACT 2090
Query 1879 GTCTC 1883
|||||
Sbjct 2091 GTCTC 2095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5