BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04780.1
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480107 jgi|Araly1|480107|fgenesh2_kg.3__2808__AT2G04780.2 1493 0.0
> Ahg480107 jgi|Araly1|480107|fgenesh2_kg.3__2808__AT2G04780.2
Length=1436
Score = 1493 bits (808), Expect = 0.0
Identities = 932/991 (94%), Gaps = 12/991 (1%)
Strand=Plus/Plus
Query 297 AGTAGGAGAGTTCAAGAAACAATGGCAAAGATGCAATTATCAATCTTTATCGCTGTCGTT 356
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 454 AGTGGGAGAGTTCAAGAAACGATGGCAAAGATGCAATTATCAATCTTTATCGCTGTCGTC 513
Query 357 GCGCTTATCGTCTGCTCTGCATCTGCTAAAACCGCAAGCCCTCCAGCTCCAGTGCTGCCA 416
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GCGCTTCTCGTCTGCTCTGCATCTGCTAAAACCGCAAGCCCTCCAGCTCCAGTGCTGCCA 573
Query 417 CCGACACCAGCTCCAGCACCAGCCCCGGAAAATGTGAATCTCACCG-AGCTTTTAAGTGT 475
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 574 CCGACACCAGCTCCAGCACCAGCCCCGGAAAATGTGAATCTCACCGCA-CTTTTAAGTGT 632
Query 476 AGCTGGTCCGTTCCACACATTCCTCGACTACCTTCTCTCGACTGGAGTCATTGAGACTTT 535
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 633 AGCTGGTCCGTTCCACACATTCCTTGACTACCTTCTCTCAACTGGAGTCATTGAGACATT 692
Query 536 CCAAAACCAAGCTAACAACACTGAGGAAGGCATCACAATCTTTGTCCCTAAAGATGATGC 595
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 693 CCAAAACCAAGCTAACAACACCGAGGAAGGCATCACAATCTTTGTCCCCAAGGATGATGC 752
Query 596 TTTCAAAGCTCAGAAGAATCCTCCTTTGTCAAATCTCACAAAGGATCAGCTTAAGCAGCT 655
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 753 TTTCAAGGCTCAGAAGAATCCTCCTTTGTCAAATCTGACAAAGGATCAGCTCAAGCAGCT 812
Query 656 TGTTCTCTTCCATGCTCTGCCTCATTACTATTCGCTTTCGGAATTCAAGAACTTGAGCCA 715
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TGTTCTCTTCCATGCTCTTCCTCATTACTATTCGCTTTCGGAATTCAAGAACTTGAGCCA 872
Query 716 ATCTGGTCCAGTGAGCACCTTTGCTGGTGGTCAATACTCCTTGAAATTCACTGATGTTTC 775
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 873 ATCTGGTCCAGTGAGTACCTTTGCTGGTGGTCAATACTCCTTGAAATTCACAGATGTTTC 932
Query 776 TGGCACGGTTAGGATTGATTCTTTATGGACCAGGACTAAAGTCAGCAGCAGTGTTTTCTC 835
|||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 933 TGGCACGGTTCGAATTGATTCTCTATGGACCAGGACTAAAGTCAGCAGCAGTGTTTTCTC 992
Query 836 CACTGACCCTGTTGCGGTTTACCAAGTGAACCGCGTGCTTCTACCCGAAGCAATCTTTGG 895
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 993 CACTGACCCTGTTGCTGTTTACCAAGTTAACCGCGTGCTTCTACCCGAAGCAATCTTTGG 1052
Query 896 TACTGATGTCCCTCCAATGCCTGCTCCAGCTCCTGCTCCTATCGTTAGTGCTCCTTCGGA 955
||||||||||||||||||||| |||||||||||||||||| | |||| |||||||| ||
Sbjct 1053 TACTGATGTCCCTCCAATGCCGGCTCCAGCTCCTGCTCCTGTTGTTACCGCTCCTTCCGA 1112
Query 956 TTCTCCTTCAGTTGCTGATTCTGAAGG-AGCT-T-CTTCACCAAAGTCCTCACACAAGAA 1012
||||||||| | ||||||||||||| | | | |||||||||||||||||||||||||
Sbjct 1113 TTCTCCTTC--T-GCTGATTCTGAAGCCAATTCTACTTCACCAAAGTCCTCACACAAGAA 1169
Query 1013 CTCCGGACAAAAGCTGCTACTTGCACCAATCTCCATGGTTATTTCCGGTTTGGTGGCATT 1072
||| ||||| ||||||| | |||| |||||| |||||||| |||||||||||||||||||
Sbjct 1170 CTCAGGACAGAAGCTGCCAGTTGCTCCAATCGCCATGGTTCTTTCCGGTTTGGTGGCATT 1229
Query 1073 GTTCTTGTGATCAGATGGTTTTGCAGATTGAGTTATGTTTTTAAGTTACAATGTGAAAGA 1132
||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 1230 GTTCTTGTGATCAAATGGTTTTGCAGATTGAGT-ATGTTCT-AAGTTACAATGTGAAAGA 1287
Query 1133 TTGTATTACATcatttgaattgtctttttgatttttgaaacccattttttattatacatt 1192
|||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1288 TTGTATTACATCATCCCAATTATCTTTT-GATTTTTGAAACCCATTTTTTATTATACATT 1346
Query 1193 tttatcattattattgtttgtcattacgattgttgtgaattgaaattGTTCCTCCATTTT 1252
|||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1347 TTTATCATTATTATTGTT-GTCATTACCATTGTTGTGAATTGAGATTGTTCCTCCATTTT 1405
Query 1253 GCTTTTCTTTAGTTAATTTTGCTTCATTTGC 1283
|||||||| ||||| ||||||||||||||||
Sbjct 1406 GCTTTTCTGTAGTTGATTTTGCTTCATTTGC 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48034875420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5