BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04790.2
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480108 jgi|Araly1|480108|fgenesh2_kg.3__2809__AT2G04790.2 710 0.0
> Ahg480108 jgi|Araly1|480108|fgenesh2_kg.3__2809__AT2G04790.2
Length=506
Score = 710 bits (384), Expect = 0.0
Identities = 474/515 (92%), Gaps = 15/515 (3%)
Strand=Plus/Plus
Query 1 CAGAAGAAGACAATGGCCTCTCTCTTCACACCATCACCAACCACCACTAGTAGTAGTGGA 60
|||| ||| ||||||||||||||||||||||||||||||||||||| ||| || | |||
Sbjct 1 CAGAGGAACACAATGGCCTCTCTCTTCACACCATCACCAACCACCAGGAGTGGTGGCGGA 60
Query 61 GACACCATCTATGTAGCGGCGGTGCCGCTTAAAGCCGCGGCCGGTCCGCCGCAACTTATT 120
||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 61 GACGCCGTCTATGTAGCGGCGGTGCCGCTTAAAGCAGCGGCCGGTCCGCCGCAGCTTATT 120
Query 121 ATGTCAATGGCTTACTCACTTAATATCTCAAATTTACAACATTTCATGGTCCTCATCAAA 180
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 121 ATGTCAATGGCTTACTCACTTAATCTCTCGAATTTACAACATTTCATGGTCCTCATCAAA 180
Query 181 CCTTCTTCTCCAATCCGTCAAGAGGTTC-TTGTGTTTGATTTTCAGCCACGTAACCCTGA 239
|||||||||||||| |||||||||| || |||||||||||||||||||||||| || ||
Sbjct 181 CCTTCTTCTCCAATTCGTCAAGAGG-TCAGTGTGTTTGATTTTCAGCCACGTAATCCAGA 239
Query 240 AAGCATAGAAGCAGCAATCTCACTTTTGTCAGGAAATTTGATTCCAGGTGTAGTT-TTGC 298
||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 240 AAGTATAGAAGCAGCAATCTCAGTTTTGTCAGGAAATTTGATTCCAGGTGTAGTTCTTG- 298
Query 299 AAAGAAGGTTGAAGAATGTTCCAAGACAAAGATGTTGGATGGTTGGACCATCTAAAGGGA 358
|||||||||||||||| ||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 299 AAAGAAGGTTGAAGAAGGTTCCAAGACAAAGATGTTGGTTGGTTGGATCATGTAAAGGG- 357
Query 359 ATGATGCTATGGAAATGGCAA-TGGAGTTTAATAAG-TCATGGGAGACTGAT-TTGAGAG 415
| |||||||||||||||||| | ||||||||| | ||||||||||||||| || ||||
Sbjct 358 A--ATGCTATGGAAATGGCAACT-GAGTTTAAT-GGCTCATGGGAGACTGATCTT-AGAG 412
Query 416 TTGGATTTCATGATTGCCGACATTATACCAATGAACTTGTCCAACATCTTACCGGAGAAA 475
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 413 TTGGATTTCATGATTGCCGAAACTATACCAATGAACTTGTCCAACATCTTACCGGAGAAA 472
Query 476 TGCAAAT-TGTGGAGCGACTTCCAAGAAGCTAATG 509
||||||| | |||||||||||||||||||||||||
Sbjct 473 TGCAAATCT-TGGAGCGACTTCCAAGAAGCTAATG 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26381058564
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5