BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04810.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930800 jgi|Araly1|930800|scaffold_303257.1 1423 0.0
Ahg480113 jgi|Araly1|480113|fgenesh2_kg.3__2814__AT2G04840.1 736 0.0
Ahg342808 jgi|Araly1|342808|fgenesh1_pg.C_scaffold_3002571 516 2e-145
Ahg936150 jgi|Araly1|936150|scaffold_500341.1 167 2e-40
Ahg936152 jgi|Araly1|936152|scaffold_500343.1 119 5e-26
> Ahg930800 jgi|Araly1|930800|scaffold_303257.1
Length=1223
Score = 1423 bits (770), Expect = 0.0
Identities = 1063/1199 (89%), Gaps = 41/1199 (3%)
Strand=Plus/Plus
Query 21 GATGAGA-AAGAATAAGAGACAAAAAGTGTCTAGAAATAGTGATTGGTCCAAGCTTTGTC 79
||||| | ||||| ||||||||||||||| ||| |||| | |||||||||||||||||||
Sbjct 21 GATGA-ATAAGAAGAAGAGACAAAAAGTGCCTAAAAATGGCGATTGGTCCAAGCTTTGTC 79
Query 80 CCGATGTTTTGCGGAAGATATACGAAACCTTAAGGAGCCCTGTTGATTCTCACCGCGCAA 139
||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||
Sbjct 80 CCGATGTTTTGCGAAAGATATTCGAAACCTTAAGCAGCCCTGTTGATTCCCACCGCGCAA 139
Query 140 AAATCGTTTGCTCGAATTGGTATTCCGTTTGGAAAACATGCGTGAAGAGGCCTCTATGTC 199
|||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||
Sbjct 140 AAATCGTTTGCTCGGGTTGGTATTCCGTTTGGAAAACATGCGCAAAGAGGCCTCCATGTC 199
Query 200 CACTGAGGATAATTCACCAAGGCGATTCTCCCACCGTAGGAGACGGCAACAGAAAACTCA 259
|| |||||||||| |||||||| |||||||||||| ||||| | |||||||||||||||
Sbjct 200 CATTGAGGATAATACACCAAGGTGATTCTCCCACCTTAGGAAAAGGCAACAGAAAACTCG 259
Query 260 TGGGATTC-TCCTA-CA-A-CAGCTATTGTATGGCTAGCTCCGGAAACTGGCTCCTGATG 315
| ||| || ||| | || | |||||||||||||||||||||||||||||||| ||||||
Sbjct 260 TCGGACTCTTCC-AGCACAGAAGCTATTGTATGGCTAGCTCCGGAAACTGGCTTCTGATG 318
Query 316 GTTGATCGTT-GTCTCAAATTCTATATTTATAACTTGTTGACGAAGGAAAGGATCGATCT 374
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GTTGAGC-TTCGTCTCAAATTCTATATTTATAACTTGTTGACGAAGGAAAGGATCGATCT 377
Query 375 TCCATCGATGGAGTCAAAAATACGTGGCGGGCAAGTAAGCTTCAAATCT--AAAAGCAAC 432
||||||||||||||| |||||| ||||||||||||||| |||||| || || || ||
Sbjct 378 TCCATCGATGGAGTCGCAAATACTTGGCGGGCAAGTAAGGTTCAAACCTGGAAGAG-AA- 435
Query 433 AATTACAATTTTGGATACTTGGTCGGGCCTTCTCGTAAGGATGATATAGTGCCGTATGAC 492
||| | | ||||||||||||||||||||||||| ||| |||| |||||||| ||||
Sbjct 436 TATTTCCA---TGGATACTTGGTCGGGCCTTCTCGT-AGG--GATAAAGTGCCGTTTGAC 489
Query 493 TATGAAGCCGTTGAATGGAAAAAATCATTAGCTGTTCTGTGGGTAGACGAGACAACAGGA 552
|||||||||||||||||| | ||||| |||||||||||||||||| |||| ||||||||
Sbjct 490 TATGAAGCCGTTGAATGGGAGAAATCGTTAGCTGTTCTGTGGGTAAACGACACAACAGGG 549
Query 553 GATTATG-CAGTTGCTTGGACTTTTATGCGACAATACTTGTTCTCATACATAAAAGGAGA 611
||||||| | ||||||||||||||||| | | |||| |||||||||||||| ||||||||
Sbjct 550 GATTATGTC-GTTGCTTGGACTTTTATACAAAAATATTTGTTCTCATACATGAAAGGAGA 608
Query 612 TTATTCTTGGTGTA-ATCTGAA-TCATAATGGGAAAAGTTTGGTTTTGTTTGATATGGCT 669
| || |||| | | || |||| || |||||| |||||||||||||||||||||||||||
Sbjct 609 TGGTTTTTGGCG-AGATTTGAATTC-TAATGGAAAAAGTTTGGTTTTGTTTGATATGGCT 666
Query 670 TGTGAGAACAATAAGCTTTATTTGTTGACAATGGATCATCACATCAAGATTTTCAATTTC 729
|||||| ||| || ||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 667 TGTGAGGACAGTATGCTTTATCTGTTGACAATTGATCATCACATCAAGATTTTCAATTTC 726
Query 730 TATGGAGATTTTTTAACAGGAGAACAAAACC-----T---GT-ATCCGTTTAACTTCGTT 780
| ||||||| |||| |||||| ||||||||| | || ||||||||||||||||
Sbjct 727 TTTGGAGATATTTTCACAGGAAAACAAAACCGGTATTGGGGTCGTCCGTTTAACTTCGTT 786
Query 781 GAGGATCCGTCGGAATACGTTTGGAAGAGGAAGATAGTGATTCGGAGATCAGGAGAGGTA 840
| | | |||| ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 787 GCGCAACCGTGGGAATACGTTTGGAAGAGGAAAATGGTGATTCGGAGATCAGGAGAGGTA 846
Query 841 CTGATAGTCTTGAGCTTGaaaa-aaaaaGTGCAAAATGAAGAGAAACTTTTGTTTTACAT 899
||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||
Sbjct 847 CTGATAGTCTTGAGCTT-AAAAGAAAAAGTGAAAAAGGAAGAGAAACTTTTGTTTTACAT 905
Query 900 CTTTAAGATGAATCTTGAGAGTCGCAAGTGGGAAAGAGTTTATTGTATTGGAGATGAGAT 959
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 906 CTTTAAGATGAATCTTGAGAGTTGCAAGTGGGAAAGAGTTTATTCTATTGGAGATGAGAT 965
Query 960 GTTGATTTTTGGTCGTGGGGTTACAG--C-TCTTGCTCTTGAAGATCTTGATGATGGGAT 1016
||||| |||||||||||||||||||| | |||||||||| ||||||||| ||||| ||
Sbjct 966 GTTGAGTTTTGGTCGTGGGGTTACAGTACCTCTTGCTCTTAAAGATCTTGGGGATGGAAT 1025
Query 1017 AAAGAGTAATTCAATCTATTTCGTCGGCGAAGATGTTTGGCCAGATCATCAAGAACATGA 1076
|||||| ||||||||| ||| || | |||||| ||||||||||||||| |||| |||||
Sbjct 1026 CAAGAGTGATTCAATCTGTTTTGTTGACGAAGACGTTTGGCCAGATCATAAAGATCATGA 1085
Query 1077 GCATCGTGTTTCAAATTGCGGTTTCTTCGATATTGCCACAAGTAAGATCGAATGGCCTAA 1136
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1086 TCACCGTGTTTCAAATTGCGGTGTCTTCGATATTGCCACAAGTAAGATCGAATGGCCTAA 1145
Query 1137 GAAAATCTATTGTTTCATTAATCAAAA-TCAGTGGTTTGTTGGGGGAGTTGCTTATTAG 1194
||| |||||||||||||||||| |||| ||| ||||||||| ||||||||||||| |||
Sbjct 1146 GAAGATCTATTGTTTCATTAAT-AAAACTCACTGGTTTGTTCGGGGAGTTGCTTACTAG 1203
> Ahg480113 jgi|Araly1|480113|fgenesh2_kg.3__2814__AT2G04840.1
Length=1197
Score = 736 bits (398), Expect = 0.0
Identities = 787/963 (82%), Gaps = 73/963 (8%)
Strand=Plus/Plus
Query 279 CTATTGTATGGCTAGCTCCGGAAACTGGCTCCTGATGGTTGATCGTTGTCTCAAATTCTA 338
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 261 CTATTGTATGGCTAGCTCCGGAAACTGTCTCCTGATGGTTGATCGTCGTCTCAAATTCTC 320
Query 339 TATTTAT-AAC-TTGTTGAC-GAAGGAAAGGATCGATCTTCCATCGATGGAGTCAAAAAT 395
||||| | ||| || ||||| | ||| ||||||| |||||||||| ||||||| | | ||
Sbjct 321 TATTT-TGAACATT-TTGACAGGAGG-AAGGATCAATCTTCCATCAATGGAGTTACATAT 377
Query 396 ACGTGGCGGGCAAGTAAGCTTCAAATCTAAAAGCAACAAT--TAC-A--ATTTTGGATAC 450
|||||| | ||||||| ||||||| || |||| | ||| | | | ||| ||||| |
Sbjct 378 ACGTGGAAGACAAGTAACCTTCAAACCTGAAAG--AGAATGGTCCGATGATTCTGGATGC 435
Query 451 TTGGTCGGGCCTTCTCGTAAGGATGATATAGTGC-CGTATGACTATGAAGCCGTTGAATG 509
|| ||||| ||| |||||| ||| | || || | ||||||| | ||| | || |||||
Sbjct 436 TTCTTCGGGTCTTATCGTAATGAT-A-AT-GT-CTCGTATGAATTTGATTCTGTCGAATG 491
Query 510 GAAAAAATCATTAGCTGTTCTGTGGGTAGACGAGACAACAGGAGATTATG-CAGTTGCTT 568
|||||| || |||||||||| ||| || ||||||||||||| ||||||| | |||||||
Sbjct 492 GAAAAACTCGGTAGCTGTTCTATGGATAAACGAGACAACAGGGGATTATGTC-GTTGCTT 550
Query 569 GGACTTTTATGCGA-CAATACTTGTTCTCATACATA-AAAGGAGATTATTCTTGGTGTAA 626
|||| || || | | || |||||||||||||||| | |||||||||| ||||||||||||
Sbjct 551 GGACATTCATAC-AGCATTACTTGTTCTCATACA-AGAAAGGAGATTCTTCTTGGTGTAA 608
Query 627 TCTGAATCATAATGGGAAAAGTTTGGTTTTGTTTGATATGGCTTGTGAGAACAATAAGCT 686
||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 609 TCTAAATCACAATGGGAAAAGGTTGGTTTCGTTTGATATGGCTTGTGAGAACAATAAGCT 668
Query 687 TTAT-TTGT-TGACA-ATGGATCATCACATCAA-GATTTTCAATTTCTATGGAGATTTTT 742
|||| || | | || | |||||||||| || |||||| |||||| ||||| |||||
Sbjct 669 TTATCTT-TACG-CAGCT-AATCATCACAT-AAGGATTTTTGATTTCTCTGGAG-TTTTT 723
Query 743 ----TA-ACAGGAGAA-C-AAAA-CC----T-G---TATCCGTTTAACTTC-GTTGAGGA 785
|| | | || || | |||| || | | |||||||||||| | ||||||||
Sbjct 724 CCCATAGAAAAGAAAACCGAAAACCCGTATTCGAAATATCCGTTTAAC-GCGGTTGAGGA 782
Query 786 TCCGTCG-GAATACGTTTGGAAGAGGAAGATAGTGATTC-G-GA-GATCAGGAGAGGTAC 841
|||| | |||||||||||||||||||| |||| ||||| | | |||||| |||||
Sbjct 783 ACCGT-GCGAATACGTTTGGAAGAGGAAAATAGCGATTCAGAAATCATCAGGTGAGGTTT 841
Query 842 TGAT-AGTCTTGAG-CTTGaaaaaaaaaG---TGCAAAATGAAGAGAAACTTTTGTTTTA 896
|||| | ||||||| ||| ||| || | || || ||||||||||||||||||||
Sbjct 842 TGATCA-TCTTGAGCCTT--AAACAAGTGTTTTG-TGAA-GAAGAGAAACTTTTGTTTTA 896
Query 897 CATCTTTAAGATGAATCTTGAGAGTCGCAAGTGGGAAAGAGTTTATTGTATTGGAGATGA 956
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 897 CATCTTTAAGATGAATCTTGAGAGTTGCAAGTGGGAAAGAGTTTATTCTATTGGAGATGA 956
Query 957 GATGTTGATTTTTGGTCGTGGGGTTACA---GCT-CTTGCTCTTGAAGATCTTGATGATG 1012
||||||| ||||||||| || |||||| ||| || |||||| ||||||||| | |||
Sbjct 957 GATGTTGGTTTTTGGTCAAGGTGTTACAATAGCTACT-GCTCTTAAAGATCTTGGTCATG 1015
Query 1013 GGATAAAGAGTAATTCAATCTATTTCGTCGGCGA-AGATGTTTGGCCAGATCATCAAGAA 1071
| || |||||| ||||| ||| ||| ||| | | ||| || |||||||||||||||||
Sbjct 1016 GAATCAAGAGTGATTCAGTCTCTTTTATCGAC-ACAGACGTCTGGCCAGATCATCAAGAT 1074
Query 1072 CATGAGCATCGTGTTTCAAATTGCGGTTTCTTCGATATTGCCACAAGTAAGATCGAATGG 1131
||||| ||||||||||| | ||||||| ||||| ||||| | ||||||||||||||||||
Sbjct 1075 CATGATCATCGTGTTTCGAGTTGCGGTGTCTTCCATATTACTACAAGTAAGATCGAATGG 1134
Query 1132 CCTAAGAAAATCTATTGTTTCATTAATCAAAATCAGTGGTTTGTTGGGGGAGTTGCTTAT 1191
||||||||||||||||||| ||| ||| ||| |||||||| |||| ||||| ||||||||
Sbjct 1135 CCTAAGAAAATCTATTGTTCCATAAATGAAACTCAGTGGTATGTTCGGGGATTTGCTTAT 1194
Query 1192 TAG 1194
|||
Sbjct 1195 TAG 1197
> Ahg342808 jgi|Araly1|342808|fgenesh1_pg.C_scaffold_3002571
Length=654
Score = 516 bits (279), Expect = 2e-145
Identities = 486/579 (84%), Gaps = 41/579 (7%)
Strand=Plus/Plus
Query 647 GTTTGG-TTTTGTTTGATATGGCTTGTGAGAACAATAAGCTTTATTTGTTGACAATG-GA 704
|||||| | || || ||||||||||||||||| | ||| |||||| | || |||| | ||
Sbjct 86 GTTTGGATGTT-TTGGATATGGCTTGTGAGAAGAGTAAACTTTATCTCTTCACAA-GTGA 143
Query 705 TCATCACATCAAGA-TTTTCAATTTCTATGGAGATTT-TTTAACAGGA-GAACAAAA-CC 760
| |||||||||||| |||| |||||||||||| ||| | | | || ||| |||| ||
Sbjct 144 TTATCACATCAAGAGTTTT-TATTTCTATGGAGGTTTCCCT-ATA-GAGGAAGAAAACCC 200
Query 761 ----T-G--T-ATCCGTTTAACTTCGTT-GAGGATCCGTCGGAATACGTTTGGAAGAGGA 811
| | | ||||||||||||| ||| || || || | ||||| ||||||| |||||
Sbjct 201 GTATTCGAATCATCCGTTTAACTTTGTTGGA-GAGCCTTGGGAATCCGTTTGGGGGAGGA 259
Query 812 AGATAGTGATTCGGAGATCAGGAGAGGTACTGATAGTCTTGAGCTTGaaaa-aaaaaGTG 870
| |||| |||||||||||||| ||||||||| |||||||||||||| |||| ||||||||
Sbjct 260 AAATAGCGATTCGGAGATCAGAAGAGGTACTTATAGTCTTGAGCTT-AAAAGAAAAAGTG 318
Query 871 CAAAATGAAGAGAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTCGCAAGTGG 930
||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 319 AAAAATAAAGAAAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAATTGCAAGTGG 378
Query 931 GAAAGAGTTTATTGTATTGGAGATGAGATGTTGATTTTTGGTCGTGGGGTTACAG--C-T 987
|||||| |||||| ||||||||||||||| ||||||| |||||||||||||||| | |
Sbjct 379 GAAAGAATTTATTCTATTGGAGATGAGATATTGATTTATGGTCGTGGGGTTACAATACCT 438
Query 988 CTTGCTCTTGAAGATCTTGATGATGGGATAAAGAGTAATTCAATCTATTTCGTCGG-CGA 1046
||||||||| ||||||||| | | || || |||||| |||||||||||||||| || |||
Sbjct 439 CTTGCTCTTAAAGATCTTGGTCACGGAATCAAGAGTGATTCAATCTATTTCGT-GGACGA 497
Query 1047 AGATGTTTGGCCAGATCATCAAGA------A---CATGA-GCATCGTGTTTCAAATTGCG 1096
||||||||||||||||||| |||| | ||| | | ||| ||||||||||||||
Sbjct 498 AGATGTTTGGCCAGATCATAAAGATTGGCCAGATCATAAAG-ATCATGTTTCAAATTGCG 556
Query 1097 GTTTCTTCGATATTGCCACAAGTAAGATCGAATGGCCTAAGAAAATCTATTGTTTCATT- 1155
|| |||||||||||||||||||||||||| ||||||||||||| ||||||| |||| ||
Sbjct 557 GTGTCTTCGATATTGCCACAAGTAAGATCAAATGGCCTAAGAAGATCTATT-TTTCCTTT 615
Query 1156 AATCAAAATCAGTGGTTTGTTGGGGGAGTTGCTTATTAG 1194
||| ||||||||||||||||| |||||||||||||||||
Sbjct 616 AATAAAAATCAGTGGTTTGTTCGGGGAGTTGCTTATTAG 654
> Ahg936150 jgi|Araly1|936150|scaffold_500341.1
Length=1187
Score = 167 bits (90), Expect = 2e-40
Identities = 581/801 (73%), Gaps = 101/801 (13%)
Strand=Plus/Plus
Query 445 GGATACTTGGTCGGGCCTTCTCGTAAGGATGATATAGTGCCGTATGACTATGAAGCCGTT 504
||| |||| |||| ||||| |||||||||| | || ||| || | ||| || | ||
Sbjct 411 GGACACTTTGTCGAGCCTTGTCGTAAGGAT-A-AT-GTGTCGAAAGAC-AT-----C-TT 460
Query 505 G-AATGGAAAAAATCATTAGCTGTTCTGTGGGTAGACGAGACAACAGGAGATTATG-CAG 562
| | || |||| |||| || |||||||||| || |||||| |||||| ||||||| | |
Sbjct 461 GCACTGCAAAAGATCAGGAGTTGTTCTGTGGATAAACGAGAGAACAGGGGATTATGTC-G 519
Query 563 TTGCTTGGACTTTT-ATGCGACAATACTTGTTCTCATACATA-AAAGGAGATTATTCTTG 620
||||||||| |||| | || || ||||||||| |||||| | ||||||||| |||| ||
Sbjct 520 TTGCTTGGA-TTTTGAAACGGCATTACTTGTTCACATACA-AGAAAGGAGATGATTCGTG 577
Query 621 GTGTAATCT-GAAT---CA-T--A--A----TGGGAAAAGTTT-GGTTTTGTTTGATATG 666
||| ||| | |||| | | | | || ||||| ||| |||| | || ||| ||
Sbjct 578 GTGGAAT-TGGAATAAGGATTGGATTACCGGTGCGAAAAATTTGGGTTAT-TTGGATGTG 635
Query 667 GCTTGTGAGAACAATAAGCTTTATTTGTTGACAATGGATCATCACATCAAGATTTTCAAT 726
|||| | |||||| |||||||||| | | || | ||| | |||||||||||| || ||
Sbjct 636 GCTTATAAGAACAGTAAGCTTTATCTCTACACCACCGATAACCACATCAAGATTATCGAT 695
Query 727 TTCTATGGAGATTT-TTTAACAGG-AG-AA-C---AA-AACCTGTATC-CGTTTA-AC-- 774
|||| ||||||||| | | ||| || || | || |||| ||||| | | | |
Sbjct 696 TTCTCTGGAGATTTCCCT-A-AGGAAGAAATCGAAAATAACCCGTATCTGGATCATCCTT 753
Query 775 TTCGTTGAGGAT-C-CGTCGGA-AT-ACG-T--TTGGAAGAGGAAG-ATAGTGATTCGGA 826
|| | | | | | ||| ||| | | | | || ||||||| || |||| |||| ||
Sbjct 754 TTAACT-ATGCTCCGCGT-GGATGTGAAGTTACTTCGAAGAGG-AGAATAGCCATTCAGA 810
Query 827 GATCAGGAGAGGTACTGAT-AGTCTTGAGCTTGaaaaaaaaaGTGCAAAATGAAGAG-AA 884
|||||||||||| |||| | |||||| || | | || || |||| || ||
Sbjct 811 AATCAGGAGAGGTTTTGATCA-TCTTGA-ATT-TAGTACTAATTG----GTGAA-AGCAA 862
Query 885 ACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTCGCAAGTGGGAAAGAGTTTATTG 944
||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |
Sbjct 863 ACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAAATGGGAAAGAGTGCAATC 922
Query 945 TATTGGAGATGA-GA--TGTTGATTTTTGGTCGTGGGGTTACAGCTCTT-GCTC---TTG 997
|||||||||||| || ||||||| ||||||| |||||||||| | || | ||
Sbjct 923 TATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACAA-TAAGAGCACCGGTTC 981
Query 998 AAGATCTTGATGATGGGATAAAGAGTAATTCAATCTATTTCGTCGGCGAAGATGTTTGGC 1057
||||| ||| ||| || || |||||| ||| |||| |||||||| ||| | || ||
Sbjct 982 AAGATGTTGGTGACGGAATCAAGAGTGGTTCTATCTTTTTCGTCGACGAT-A-GT--GGT 1037
Query 1058 CAGATCATCAAGAACATGAGC-ATCGT-GTT-T-CAAATTGCGGTTTCTTCGATATTGCC 1113
| | || | || || | ||||| ||| | || |||||||| |||| |||||||||
Sbjct 1038 C---T--TCGGG--CA-GA-CTATCGTTGTTATTCAGATTGCGGTATCTTTGATATTGCC 1088
Query 1114 ACAAGTAAGA-TCGAATGGCCTAAGAAAAT-CTATTGT-TTCATTAATCAAAA-TCAGTG 1169
||||||| || | ||||||||||| || | | |||| || || || |||| ||| ||
Sbjct 1089 ACAAGTA-GAATTAAATGGCCTAAGCAATTTC-ATTGCCTT-ATGGAT-AAAAGTCATTG 1144
Query 1170 GTTTGTTGGGGGAGTTGCTTA 1190
||||| | ||| |||||||
Sbjct 1145 GTTTGCTCCAGGATTTGCTTA 1165
> Ahg936152 jgi|Araly1|936152|scaffold_500343.1
Length=1216
Score = 119 bits (64), Expect = 5e-26
Identities = 420/578 (73%), Gaps = 79/578 (14%)
Strand=Plus/Plus
Query 522 AGCTGTTCTGTGGGTAGACGAGACA-ACAGGAGATTATGCAGTTGCTTGGACTTTTATGC 580
||||||||||||| || |||||| | || || ||||||| |||||||||| ||||| |
Sbjct 617 AGCTGTTCTGTGGATAAACGAGA-AGACGGGTGATTATGTGGTTGCTTGGATTTTTAAAC 675
Query 581 GA-CAATACTTGTTCTCATACATA-AAAGGAGATTATTC-T--TGG---T-G--TAAT-- 627
| || ||||||||| |||||| | ||||||||| | || | ||| | | ||||
Sbjct 676 -AGCATTACTTGTTCACATACA-AGAAAGGAGATGAATCATGGTGGAACTGGAATAATAA 733
Query 628 CT-G-AA-TC-AT-AATG--G-GAAAAGTTT-GGTTTTGTTTGATATGGCTTGTGAGAAC 678
|| | || || | || | | | ||| ||| |||| | || ||| |||||| ||| |||
Sbjct 734 CTGGAAATTCGGTCAAGGACGCGTAAA-TTTGGGTTAT-TTGGATTTGGCTTATGAAAAC 791
Query 679 AATAAGCTTTATTTGT-TGACAATGGATCATCACATCAAGATTTTCAATTTCTATGGAGA 737
| ||||||||| | | | || | ||| ||||||||||||| ||||||||| ||||||
Sbjct 792 AGCAAGCTTTATCTCTAT-ACTACCGATGGTCACATCAAGATTATCAATTTCTCTGGAGA 850
Query 738 TTT-TTTAACAGG-AG-AA-C---AA-AA--C----CT-G-T-ATCCGTTTAACT-TCGT 779
||| | | ||| || || | || || | || | | |||| ||||||| | |
Sbjct 851 TTTCCCT-A-AGGAAGAAATCGAAAATAACCCGTATCTGGATCATCCTTTTAACTAT-GC 907
Query 780 TGAGGATCCG-TCGGAA--TACGTTTGGAAGAGGAAG-ATAGTGATTCGGAGATCAGGAG 835
| | || | | |||| || ||| || |||| || |||| |||| || ||||||||
Sbjct 908 TCCGCAT-GGATTGGAACTTA--TTTCGAGGAGG-AGAATAGCCATTCAGAAATCAGGAG 963
Query 836 AGGTACTGAT-AGTCTTGAGCTTGaaaaaaaaaGTGC-AA--AATG-AAGAGAAACTTTT 890
|||| |||| | || |||| || | | |||| | || ||| ||||| ||||||
Sbjct 964 AGGTTTTGATCA-TCGTGAG-TT--TATTAGAAGTACGAATTGATGAAAGAG-CACTTTT 1018
Query 891 GTTTTACATCTTTAAGATGAATCTTGAGAGTCGCAAGTGGGAAAGAGTTTATTGTATTGG 950
||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||||||
Sbjct 1019 GTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAAATGGGAAAGAGAGCATTCTATTGG 1078
Query 951 AGATGA-GATGTTGAT--T-TTTGGTCGTGGGGTTACAGCTCTT-GCTC---TTGAAGAT 1002
|||||| || | |||| | ||||||| |||||||||| | || | || |||||
Sbjct 1079 AGATGATGA-GATGATAATATTTGGTCATGGGGTTACAA-TAAGAGCACCGGTTCAAGAT 1136
Query 1003 CTTGATGATGGGATAAAGAGTAATTCAATCTATTTCGT 1040
||| |||||| || |||| | |||||||| ||||||
Sbjct 1137 GTTGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGT 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5