BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04830.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342808 jgi|Araly1|342808|fgenesh1_pg.C_scaffold_3002571 564 2e-160
Ahg930800 jgi|Araly1|930800|scaffold_303257.1 468 2e-131
Ahg480113 jgi|Araly1|480113|fgenesh2_kg.3__2814__AT2G04840.1 350 7e-96
Ahg936150 jgi|Araly1|936150|scaffold_500341.1 169 2e-41
Ahg936152 jgi|Araly1|936152|scaffold_500343.1 132 3e-30
> Ahg342808 jgi|Araly1|342808|fgenesh1_pg.C_scaffold_3002571
Length=654
Score = 564 bits (305), Expect = 2e-160
Identities = 353/376 (94%), Gaps = 3/376 (1%)
Strand=Plus/Plus
Query 4 AGAAGTACTTATAGTCTTGAGCTTAAAGGAAATAGTGAAAAATGAAGAGAAACTTTTGTT 63
||| ||||||||||||||||||||||| |||| |||||||||| |||| |||||||||||
Sbjct 282 AGAGGTACTTATAGTCTTGAGCTTAAAAGAAAAAGTGAAAAATAAAGAAAAACTTTTGTT 341
Query 64 TTACATCTTTAAGATGAATCTTGAGAGTTACAAGTGGGAAAGAGTTTACTCTATTGGAGA 123
|||||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||
Sbjct 342 TTACATCTTTAAGATGAATCTTGAGAATTGCAAGTGGGAAAGAATTTATTCTATTGGAGA 401
Query 124 TGAGATGTTGATTTTTGGTCGTGGGGTTACAGTACCTCTCGCTCTTAAAGATCTTGGTCA 183
|||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 402 TGAGATATTGATTTATGGTCGTGGGGTTACAATACCTCTTGCTCTTAAAGATCTTGGTCA 461
Query 184 CGGAATCAAGAGTGATTCAATCTATTTCGTCGACGACGAAGATGTTTGGCCAGATCATAA 243
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 462 CGGAATCAAGAGTGATTCAATCTATTTCGT-G--GACGAAGATGTTTGGCCAGATCATAA 518
Query 244 AGATTGGCCAGATTATAAAGATCATGTATCGAATTGCGGTGTCTTCGATATTGCCACAAG 303
||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 519 AGATTGGCCAGATCATAAAGATCATGTTTCAAATTGCGGTGTCTTCGATATTGCCACAAG 578
Query 304 TAAGATCGAATGGCCTAAGAAGATCTATTTTTCCGTTAATAAAACTCAGTGGTTTGTTTG 363
||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct 579 TAAGATCAAATGGCCTAAGAAGATCTATTTTTCCTTTAATAAAAATCAGTGGTTTGTTCG 638
Query 364 GGGAGTTGCTTATTAG 379
||||||||||||||||
Sbjct 639 GGGAGTTGCTTATTAG 654
> Ahg930800 jgi|Araly1|930800|scaffold_303257.1
Length=1223
Score = 468 bits (253), Expect = 2e-131
Identities = 343/384 (89%), Gaps = 15/384 (4%)
Strand=Plus/Plus
Query 1 AGGAGAAGTACTTATAGTCTTGAGCTTAAAGGAAATAGTGAAAAATGAAGAGAAACTTTT 60
|||||| ||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct 837 AGGAGAGGTACTGATAGTCTTGAGCTTAAAAGAAAAAGTGAAAAAGGAAGAGAAACTTTT 896
Query 61 GTTTTACATCTTTAAGATGAATCTTGAGAGTTACAAGTGGGAAAGAGTTTACTCTATTGG 120
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 897 GTTTTACATCTTTAAGATGAATCTTGAGAGTTGCAAGTGGGAAAGAGTTTATTCTATTGG 956
Query 121 AGATGAGATGTTGATTTTTGGTCGTGGGGTTACAGTACCTCTCGCTCTTAAAGATCTTGG 180
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 AGATGAGATGTTGAGTTTTGGTCGTGGGGTTACAGTACCTCTTGCTCTTAAAGATCTTGG 1016
Query 181 TCACGGAATCAAGAGTGATTCAATCTATTTCGTCGACGACGAAGATGTTTGGCCAGATCA 240
| |||||||||||||||||||||| ||| || ||||| | || ||||||||||||||
Sbjct 1017 GGATGGAATCAAGAGTGATTCAATCTGTTTTGTTGACGA--A-GACGTTTGGCCAGATCA 1073
Query 241 TAAAGATTGGCCAGATTATAAAGATCATGTATCGAATTGCGGTGTCTTCGATATTGCCAC 300
||||||| | | | || | | ||| || ||||||||||||||||||||||||||
Sbjct 1074 TAAAGAT---C-A--TGATCAC---CGTGTTTCAAATTGCGGTGTCTTCGATATTGCCAC 1124
Query 301 AAGTAAGATCGAATGGCCTAAGAAGATCTATT-TTTCCGTTAATAAAACTCAGTGGTTTG 359
|||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||
Sbjct 1125 AAGTAAGATCGAATGGCCTAAGAAGATCTATTGTTTCA-TTAATAAAACTCACTGGTTTG 1183
Query 360 TTTGGGGAGTTGCTTATTAGAGAG 383
|| ||||||||||||| ||| |||
Sbjct 1184 TTCGGGGAGTTGCTTACTAG-GAG 1206
> Ahg480113 jgi|Araly1|480113|fgenesh2_kg.3__2814__AT2G04840.1
Length=1197
Score = 350 bits (189), Expect = 7e-96
Identities = 288/334 (86%), Gaps = 14/334 (4%)
Strand=Plus/Plus
Query 47 GAAGAGAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTACAAGTGGGAAAGA 106
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 877 GAAGAGAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTGCAAGTGGGAAAGA 936
Query 107 GTTTACTCTATTGGAGATGAGATGTTGATTTTTGGTCGTGGGGTTACAGTACCT-CTCGC 165
||||| ||||||||||||||||||||| ||||||||| || |||||| || || || ||
Sbjct 937 GTTTATTCTATTGGAGATGAGATGTTGGTTTTTGGTCAAGGTGTTACAATAGCTACT-GC 995
Query 166 TCTTAAAGATCTTGGTCACGGAATCAAGAGTGATTCAATCTATTTCGTCGACGACGAAGA 225
|||||||||||||||||| |||||||||||||||||| ||| ||| ||||| || | ||
Sbjct 996 TCTTAAAGATCTTGGTCATGGAATCAAGAGTGATTCAGTCTCTTTTATCGAC-AC-A-GA 1052
Query 226 TGTTTGGCCAGATCATAAAGATTGGCCAGATTATAAAGATCATGTATCGAATTGCGGTGT 285
|| |||||||||||| ||||| | | | || | || ||| |||| |||||||||
Sbjct 1053 CGTCTGGCCAGATCATCAAGAT---C-A--TGATCA---TCGTGTTTCGAGTTGCGGTGT 1103
Query 286 CTTCGATATTGCCACAAGTAAGATCGAATGGCCTAAGAAGATCTATTTTTCCGTTAATAA 345
|||| ||||| | |||||||||||||||||||||||||| ||||||| |||| | ||| |
Sbjct 1104 CTTCCATATTACTACAAGTAAGATCGAATGGCCTAAGAAAATCTATTGTTCCATAAATGA 1163
Query 346 AACTCAGTGGTTTGTTTGGGGAGTTGCTTATTAG 379
||||||||||| |||| ||||| |||||||||||
Sbjct 1164 AACTCAGTGGTATGTTCGGGGATTTGCTTATTAG 1197
> Ahg936150 jgi|Araly1|936150|scaffold_500341.1
Length=1187
Score = 169 bits (91), Expect = 2e-41
Identities = 151/179 (84%), Gaps = 7/179 (4%)
Strand=Plus/Plus
Query 46 TGAAGAG-AAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTACAAGTGGGAAA 104
|||| || ||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 854 TGAA-AGCAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAAATGGGAAA 912
Query 105 GAGTTTACTCTATTGGAGATGA-GA--TGTTGATTTTTGGTCGTGGGGTTACAGTACCT- 160
|||| | |||||||||||||| || ||||||| ||||||| |||||||||| ||
Sbjct 913 GAGTGCAATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACAATAAGAG 972
Query 161 CTCGCTCTTAAAGATCTTGGTCACGGAATCAAGAGTGATTCAATCTATTTCGTCGACGA 219
| | | || ||||| ||||| ||||||||||||||| ||| |||| ||||||||||||
Sbjct 973 CAC-CGGTTCAAGATGTTGGTGACGGAATCAAGAGTGGTTCTATCTTTTTCGTCGACGA 1030
> Ahg936152 jgi|Araly1|936152|scaffold_500343.1
Length=1216
Score = 132 bits (71), Expect = 3e-30
Identities = 142/175 (81%), Gaps = 9/175 (5%)
Strand=Plus/Plus
Query 45 ATG-AAGAGAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTACAAGTGGGAA 103
||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1003 ATGAAAGAG-CACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAAATGGGAA 1061
Query 104 AGAGTTTACTCTATTGGAGATGA-GATGTTGAT--T-TTTGGTCGTGGGGTTACAGTACC 159
|||| | |||||||||||||| || | |||| | ||||||| |||||||||| ||
Sbjct 1062 AGAGAGCATTCTATTGGAGATGATGA-GATGATAATATTTGGTCATGGGGTTACAATAAG 1120
Query 160 T-CTCGCTCTTAAAGATCTTGGTCACGGAATCAAGAGTGATTCAATCTATTTCGT 213
| | | || ||||| ||||| | |||||||||| || |||||||| ||||||
Sbjct 1121 AGCAC-CGGTTCAAGATGTTGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGT 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18238371542
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5