BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04840.1
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480113 jgi|Araly1|480113|fgenesh2_kg.3__2814__AT2G04840.1 1404 0.0
Ahg930800 jgi|Araly1|930800|scaffold_303257.1 656 0.0
Ahg342808 jgi|Araly1|342808|fgenesh1_pg.C_scaffold_3002571 398 6e-110
Ahg936150 jgi|Araly1|936150|scaffold_500341.1 222 4e-57
Ahg936152 jgi|Araly1|936152|scaffold_500343.1 178 9e-44
> Ahg480113 jgi|Araly1|480113|fgenesh2_kg.3__2814__AT2G04840.1
Length=1197
Score = 1404 bits (760), Expect = 0.0
Identities = 1069/1210 (88%), Gaps = 53/1210 (4%)
Strand=Plus/Plus
Query 1 ATGGGGAACGGCTTGATGAGcaagaagaagaagaagaagaacaacaagtacaagaagaag 60
|||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGGAACGGCTTGATGAG--A-AAGAAGAAGAAGAAG---AACAAGTACAAGAAGAAG 54
Query 61 agaCCAAACGTGTCTAG-AA-----ATTGCGATTGGTCCAAGTTTTGTTCCGATGTTTTA 114
|||||||| |||||||| || |||||||||||||||| || |||||||| |
Sbjct 55 AGACCAAAAGTGTCTAGAAATCGCGATTGCGATTGGTCCAACCTTCCACCCGATGTTCTG 114
Query 115 CGCAAGATTTTCGAAACCTTAAAGAGCCCTATTGATTCTCACC--GC-----GCGTTTGC 167
|||||||||||||||||||||||||| || ||||||||||||| || |||||||
Sbjct 115 CGCAAGATTTTCGAAACCTTAAAGAGTCCAATTGATTCTCACCGAGCAAAAACCGTTTGC 174
Query 168 TCGAATTAGTATTCAGTTTGGAAAACATGCGCGAACAAGCCTCCATGTCCATGGCGATTC 227
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TCGAATTGGTATTCAGTTTGGAAAACATGCGCGAACAAGCCTCCATGTCCATGGCGATTC 234
Query 228 ATACACCAAGGTGA-T-TC----TC--CC------A---C--CCTCCGGAAACTGTCTCC 268
||||||||| | || | || | || | | |||||||||||||||||
Sbjct 235 ATACACCAA-G-GACTCTCAAAAACAACCTATTGTATGGCTAGCTCCGGAAACTGTCTCC 292
Query 269 TGATGGTCGATCGTCGTCTCAAATTCTATATTTTGAACCTTTTGACGCGGA-CAACGATC 327
||||||| ||||||||||||||||||| |||||||||| ||||||| ||| || ||||
Sbjct 293 TGATGGTTGATCGTCGTCTCAAATTCTCTATTTTGAACATTTTGAC-AGGAGGAAGGATC 351
Query 328 AATCTTCCATCAAT---GTCACTA-ATACGTGGAGGACAAGTATTCTTTAAACCTCAAA- 382
|||||||||||||| || || | ||||||||| |||||||| ||| |||||| |||
Sbjct 352 AATCTTCCATCAATGGAGTTAC-ATATACGTGGAAGACAAGTAACCTTCAAACCTGAAAG 410
Query 383 ATGAATGGTCCAATGATTCTGGATGCTTCTTCGGGCCTTCTCGTAATGGTAACGTGTCAT 442
| ||||||||| ||||||||||||||||||||||| ||| |||||||| ||| || || |
Sbjct 411 A-GAATGGTCCGATGATTCTGGATGCTTCTTCGGGTCTTATCGTAATGATAATGTCTCGT 469
Query 443 ATGACTTTGACTCTGTTGAATGGAAAAACTCGGTAGCTGTTCTATGGATAAACGAGACAA 502
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 ATGAATTTGATTCTGTCGAATGGAAAAACTCGGTAGCTGTTCTATGGATAAACGAGACAA 529
Query 503 CAGGAGATTATGTCGTTGCTTGGACATTCATACAGCATTACTTGTTCTTC-TACAAGTCA 561
|||| |||||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 530 CAGGGGATTATGTCGTTGCTTGGACATTCATACAGCATTACTTGTTC-TCATACAAGAAA 588
Query 562 GGATATTGGTCTTGGTGTAATCTGAATCATAATGGGAAAAGTTTGGTTGT-GTTTGATAT 620
||| ||| |||||||||||||| ||||| ||||||||||| |||||| | |||||||||
Sbjct 589 GGAGATTCTTCTTGGTGTAATCTAAATCACAATGGGAAAAGGTTGGTT-TCGTTTGATAT 647
Query 621 GGCATGTGAGAACAATAAGCTTTATCTGTACACAGCTAATCATCATATCAGGATTTTTGA 680
||| ||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||
Sbjct 648 GGCTTGTGAGAACAATAAGCTTTATCTTTACGCAGCTAATCATCACATAAGGATTTTTGA 707
Query 681 TTTCTCTGGAGCTTATCCTATGGAAAAGAAAACCGAAAACCCGTATTGGAAATATCTGTT 740
||||||||||| || ||| || ||||||||||||||||||||||||| |||||||| |||
Sbjct 708 TTTCTCTGGAGTTTTTCCCATAGAAAAGAAAACCGAAAACCCGTATTCGAAATATCCGTT 767
Query 741 TAACGCGGTTGAGGAACCGTGGGAATACGTTTGGAAGAGGAAAATAGCGATTCAGAAATC 800
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 768 TAACGCGGTTGAGGAACCGTGCGAATACGTTTGGAAGAGGAAAATAGCGATTCAGAAATC 827
Query 801 ATCAGGTGAGGTTTTGATCATCTTGAGCCTTAAACAAGTGTTTTACGAAGCAGAGAGACT 860
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 828 ATCAGGTGAGGTTTTGATCATCTTGAGCCTTAAACAAGTGTTTTGTGAAGAAGAGAAACT 887
Query 861 TTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTTCAAGTGGGAAAGAGTTTATTCTCT 920
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 888 TTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTGCAAGTGGGAAAGAGTTTATTCTAT 947
Query 921 TGGAGATGAGATGTTGGTTTTTGGTCAAGGTGTTACAATACCTACTGCTCTTAAAGATCT 980
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 948 TGGAGATGAGATGTTGGTTTTTGGTCAAGGTGTTACAATAGCTACTGCTCTTAAAGATCT 1007
Query 981 TGGTGATGGAATCAAGAGTGATTCAATCTATTTCGTCGATAAAGACGTCTGGCCAGATCA 1040
|||| |||||||||||||||||||| ||| ||| |||| | ||||||||||||||||||
Sbjct 1008 TGGTCATGGAATCAAGAGTGATTCAGTCTCTTTTATCGACACAGACGTCTGGCCAGATCA 1067
Query 1041 TCAAGATCATGATCGTCGTGTTTCGAATTGCGGTGTCTTCAATATTGCCACAAGTAAGAT 1100
|||||||||||||| ||||||||||| ||||||||||||| ||||| | |||||||||||
Sbjct 1068 TCAAGATCATGATCATCGTGTTTCGAGTTGCGGTGTCTTCCATATTACTACAAGTAAGAT 1127
Query 1101 CAAATGGCCTACGAAAAAATATCGTTCCGTAAATGAAACTCAGTGGTTTGTGCTCGGAGT 1160
| ||||||||| ||||| ||| ||||| |||||||||||||||||| ||| | ||| |
Sbjct 1128 CGAATGGCCTAAGAAAATCTATTGTTCCATAAATGAAACTCAGTGGTATGTTCGGGGATT 1187
Query 1161 TGCTTATTAG 1170
||||||||||
Sbjct 1188 TGCTTATTAG 1197
> Ahg930800 jgi|Araly1|930800|scaffold_303257.1
Length=1223
Score = 656 bits (355), Expect = 0.0
Identities = 757/943 (80%), Gaps = 60/943 (6%)
Strand=Plus/Plus
Query 252 CTCCGGAAACTGTCTCCTGATGGTCGATCGTCGTCTCAAATTCTATATTT-TGAACCTT- 309
|||||||||||| || |||||||| || | |||||||||||||||||||| | || |||
Sbjct 297 CTCCGGAAACTGGCTTCTGATGGTTGAGCTTCGTCTCAAATTCTATATTTAT-AA-CTTG 354
Query 310 TTGACG-CGGACAACGATCAATCTTCCATCAAT---GTCACTAATACGTGGAGGACAAGT 365
|||||| ||| || |||| |||||||||| || ||| | ||||| ||| || |||||
Sbjct 355 TTGACGAAGGA-AAGGATCGATCTTCCATCGATGGAGTCGCAAATACTTGGCGGGCAAGT 413
Query 366 ATTCTTTAAACCTCAAAATGAATGGTCCAATGA-TT-C-TGGATGCTTCTTCGGGCCTTC 422
| || |||||| || | | | ||| | || | ||||| ||| ||||||||||
Sbjct 414 AAGGTTCAAACCT-GGAA-G-A--G---AAT-ATTTCCATGGATACTTGGTCGGGCCTTC 464
Query 423 TCGTAATGG-TAACGTGTCATATGACTTTGACTCTGTTGAAT-GGAAAAACTCGGTAGCT 480
|||| | || ||| ||| | | ||||| ||| | ||||||| ||| ||| ||| |||||
Sbjct 465 TCGT-AGGGATAAAGTGCCGTTTGACTATGAAGCCGTTGAATGGGAGAAA-TCGTTAGCT 522
Query 481 GTTCTATGGATAAACGAGACAACAGGAGATTATGTCGTTGCTTGGACATTCATACAGCAT 540
||||| ||| ||||||| |||||||| |||||||||||||||||||| || ||||| |
Sbjct 523 GTTCTGTGGGTAAACGACACAACAGGGGATTATGTCGTTGCTTGGACTTTTATACAAAAA 582
Query 541 TACTTGTTCTTC-TACAAGTCAGGATATTGG-TCTTGGTGTA-ATCTGAA-TCATAATGG 596
|| |||||| || |||| | |||| | ||| | |||| | | || |||| || ||||||
Sbjct 583 TATTTGTTC-TCATACATGAAAGGAGA-TGGTTTTTGGCG-AGATTTGAATTC-TAATGG 638
Query 597 GAAAAGTTTGGTTGTGTTTGATATGGCATGTGAGAACAATAAGCTTTATCTGTACACAGC 656
|||||||||||| ||||||||||||| |||||| ||| || ||||||||||| |||
Sbjct 639 AAAAAGTTTGGTTTTGTTTGATATGGCTTGTGAGGACAGTATGCTTTATCTGTTGACAAT 698
Query 657 TAATCATCATATCAGGATTTTTGATTTCTCTGGAGCTTATCCTATGGAAAAGAAAACCGA 716
| ||||||| |||| |||||| |||||| ||||| ||| | | | | ||||| | |
Sbjct 699 TGATCATCACATCAAGATTTTCAATTTCTTTGGAG-ATAT--T-TTCACAGGAAAA-C-A 752
Query 717 AAACCCGTATTGGAAAT-ATCTGTTTAAC-GCGGTTGAGGAACCGTGGGAATACGTTTGG 774
||||| ||||||| | || ||||||| | |||| | ||||||||||||||||||||
Sbjct 753 AAACCGGTATTGG-GGTCGTCCGTTTAACTTC-GTTGCGCAACCGTGGGAATACGTTTGG 810
Query 775 AAGAGGAAAATAGCGATTCAGAAATCATCAGGTGAGGTTTTGATCA-TCTTGAGCCTT-- 831
||||||||||| | ||||| | | |||||| ||||| |||| | ||||||| |||
Sbjct 811 AAGAGGAAAATGGTGATTC-G-GA-GATCAGGAGAGGTACTGAT-AGTCTTGAG-CTTAA 865
Query 832 -A-AACAAGTGTTTTACGAAGCAGAGAGACTTTTGTTTTACATCTTTAAGATGAATCTTG 889
| || ||||| | |||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 866 AAGAAAAAGTGAAAAAGGAAG-AGA-A-ACTTTTGTTTTACATCTTTAAGATGAATCTTG 922
Query 890 AGAGTTTCAAGTGGGAAAGAGTTTATTCTCTTGGAGATGAGATGTTG-GTTTTTGGTCAA 948
|||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 923 AGAGTTGCAAGTGGGAAAGAGTTTATTCTATTGGAGATGAGATGTTGAGTTTT-GGTCGT 981
Query 949 GGTGTTACAATACCTACT-GCTCTTAAAGATCTTGGTGATGGAATCAAGAGTGATTCAAT 1007
|| |||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 982 GGGGTTACAGTACCT-CTTGCTCTTAAAGATCTTGGGGATGGAATCAAGAGTGATTCAAT 1040
Query 1008 CTATTTCGTCGATAAAGACGTCTGGCCAGATCATCAAGATCATGATCGTCGTGTTTCGAA 1067
|| ||| || || ||||||| |||||||||||| |||||||||||| |||||||| ||
Sbjct 1041 CTGTTTTGTTGACGAAGACGTTTGGCCAGATCATAAAGATCATGATCACCGTGTTTCAAA 1100
Query 1068 TTGCGGTGTCTTCAATATTGCCACAAGTAAGATCAAATGGCCTACGAAAAAATATCGTTC 1127
||||||||||||| |||||||||||||||||||| ||||||||| ||| | ||| |||
Sbjct 1101 TTGCGGTGTCTTCGATATTGCCACAAGTAAGATCGAATGGCCTAAGAAGATCTATTGTTT 1160
Query 1128 CGTAAATGAAACTCAGTGGTTTGTGCTCGGAGTTGCTTATTAG 1170
| | ||| ||||||| |||||||| | ||||||||||| |||
Sbjct 1161 CATTAATAAAACTCACTGGTTTGTTCGGGGAGTTGCTTACTAG 1203
> Ahg342808 jgi|Araly1|342808|fgenesh1_pg.C_scaffold_3002571
Length=654
Score = 398 bits (215), Expect = 6e-110
Identities = 474/592 (80%), Gaps = 46/592 (8%)
Strand=Plus/Plus
Query 602 GTTTGGTTGTGTTT-GATATGGCATGTGAGAACAATAAGCTTTATCTGTACAC-AGCTAA 659
|||||| ||| ||| |||||||| |||||||| | ||| |||||||| | ||| || | |
Sbjct 86 GTTTGGATGT-TTTGGATATGGCTTGTGAGAAGAGTAAACTTTATCTCTTCACAAG-TGA 143
Query 660 TCATCATATCAGGA-TTTTTGATTTCTCTGGAGCTTAT-CCTATGGAAAAGAAAACCGAA 717
| |||| |||| || ||||| |||||| ||||| || | ||||| | || || |||
Sbjct 144 TTATCACATCAAGAGTTTTT-ATTTCTATGGAGGTT-TCCCTAT---AGAG-GAA--GAA 195
Query 718 AACCCGTATTGGAAAT-ATCTGTTTAACGCGGTT-GAGGAACCGTGGGAATACGTTTGGA 775
|||||||||| | ||| ||| ||||||| ||| || || || ||||||| |||||||
Sbjct 196 AACCCGTATTCG-AATCATCCGTTTAACTTTGTTGGA-GAGCCTTGGGAATCCGTTTGGG 253
Query 776 AGAGGAAAATAGCGATTCAGAAATCATCAGGTGAGGT-TTTGATCA-TCTTGAGCCTT-- 831
||||||||||||||||| | | ||||| ||||| || || | ||||||| |||
Sbjct 254 GGAGGAAAATAGCGATTC-G-GA-GATCAGAAGAGGTACTT-AT-AGTCTTGAG-CTTAA 307
Query 832 -A-AACAAGTGTTTTACGAAGCAGAGAGACTTTTGTTTTACATCTTTAAGATGAATCTTG 889
| || ||||| | || ||| | ||||||||||||||||||||||||||||||||
Sbjct 308 AAGAAAAAGTG-AAAAATAA--AGAAAAACTTTTGTTTTACATCTTTAAGATGAATCTTG 364
Query 890 AGAGTTTCAAGTGGGAAAGAGTTTATTCTCTTGGAGATGAGATGTTGGTTTTTGGTCAAG 949
||| || ||||||||||||| |||||||| ||||||||||||| ||| ||| ||||| |
Sbjct 365 AGAATTGCAAGTGGGAAAGAATTTATTCTATTGGAGATGAGATATTGATTTATGGTCGTG 424
Query 950 GTGTTACAATACCTACT-GCTCTTAAAGATCTTGGTGATGGAATCAAGAGTGATTCAATC 1008
| |||||||||||| || |||||||||||||||||| | |||||||||||||||||||||
Sbjct 425 GGGTTACAATACCT-CTTGCTCTTAAAGATCTTGGTCACGGAATCAAGAGTGATTCAATC 483
Query 1009 TATTTCGTCGATAAAGACGTCTGGCCAGATCATCAAGAT---C-ATGATC-----G-TCG 1058
|||||||| || |||| || |||||||||||| ||||| | | |||| | ||
Sbjct 484 TATTTCGTGGACGAAGATGTTTGGCCAGATCATAAAGATTGGCCA-GATCATAAAGATCA 542
Query 1059 TGTTTCGAATTGCGGTGTCTTCAATATTGCCACAAGTAAGATCAAATGGCCTACGAAAAA 1118
|||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct 543 TGTTTCAAATTGCGGTGTCTTCGATATTGCCACAAGTAAGATCAAATGGCCTAAGAAGAT 602
Query 1119 ATATCGTTCCGTAAATGAAACTCAGTGGTTTGTGCTCGGAGTTGCTTATTAG 1170
||| |||| | ||| ||| |||||||||||| | |||||||||||||||
Sbjct 603 CTATTTTTCCTTTAATAAAAATCAGTGGTTTGTTCGGGGAGTTGCTTATTAG 654
> Ahg936150 jgi|Araly1|936150|scaffold_500341.1
Length=1187
Score = 222 bits (120), Expect = 4e-57
Identities = 499/669 (75%), Gaps = 77/669 (12%)
Strand=Plus/Plus
Query 480 TGTTCTATGGATAAACGAGACAACAGGAGATTATGTCGTTGCTTGGACATTCATACAGCA 539
|||||| ||||||||||||| |||||| ||||||||||||||||||| || | || |||
Sbjct 482 TGTTCTGTGGATAAACGAGAGAACAGGGGATTATGTCGTTGCTTGGATTTTGAAACGGCA 541
Query 540 TTACTTGTTCTTC-TACAAGTCA-G-GAT-ATTGGTCTTGG---TGTAAT-CTGAAT-CA 590
|||||||||| | |||||| | | ||| ||| || ||| || ||| || | |
Sbjct 542 TTACTTGTTC-ACATACAAGAAAGGAGATGATTCGTGGTGGAATTGGAATAAGGATTGGA 600
Query 591 -TA---ATGGGAAAAGTTT-GGTTGTGTTTGATATGGCATGTGAGAACAATAAGCTTTAT 645
|| || ||||| ||| |||| | || ||| |||| | | |||||| ||||||||||
Sbjct 601 TTACCGGTGCGAAAAATTTGGGTTAT-TTGGATGTGGCTTATAAGAACAGTAAGCTTTAT 659
Query 646 CTGTACA-CAGCTAATCATCATATCAGGATTTTTGATTTCTCTGGAGCTTAT-CCTATGG 703
|| |||| || | || | || |||| |||| | ||||||||||||| || | |||| ||
Sbjct 660 CTCTACACCA-CCGATAACCACATCAAGATTATCGATTTCTCTGGAGATT-TCCCTAAGG 717
Query 704 AAAAGAAAACCG--AA-AACCCGTAT-TGGAAAT-AT-CTGTTTAAC-GCGGT-TGAG-G 754
||| ||| || || ||||||||| ||| || || || |||||| | | | | |
Sbjct 718 --AAG-AAATCGAAAATAACCCGTATCTGG--ATCATCCT-TTTAACTATGCTCCGCGTG 771
Query 755 AACCGTGGGAA--TACGTTTGGAAGAGGAAAATAGCGATTCAGAAATCATCAGGTGAGGT 812
| || ||| ||| || |||||||| |||||| |||||| || |||||| |||||
Sbjct 772 GA---TGTGAAGTTAC--TTCGAAGAGGAGAATAGCCATTCAG-AA--ATCAGGAGAGGT 823
Query 813 TTTGATCATCTTGAGCCTTA-AAC-AAGTGTTTTACGAAGCAGAGAGACTTTTGTTTTAC 870
|||||||||||||| ||| || || || | | |||| | | |||||||||||||
Sbjct 824 TTTGATCATCTTGA-ATTTAGTACTAATTG-GTGA--AAGC--A-A-ACTTTTGTTTTAC 875
Query 871 ATCTTTAAGATGAATCTTGAGAGTTTCAAGTGGGAAAGAGTTTATTCTCTTGGAGATGA- 929
|||||||||||||||||||||||| ||| ||||||||||| | ||| ||||||||||
Sbjct 876 ATCTTTAAGATGAATCTTGAGAGTGGCAAATGGGAAAGAGTGCAATCTATTGGAGATGAT 935
Query 930 GA--TGTTGGTTTTTGGTCAAGGTGTTACAATACCTA-CTGCTCTTAAAGATCTTGGTGA 986
|| ||||| | |||||||| || ||||||||| | | | || ||||| |||||||
Sbjct 936 GAGATGTTGATCTTTGGTCATGGGGTTACAATAAG-AGCACCGGTTCAAGATGTTGGTGA 994
Query 987 TGGAATCAAGAGTGATTCAATCTATTTCGTCGATAA-AGACGTCTGGCCAGATCATCAAG 1045
||||||||||||| ||| |||| ||||||||| | || |||| | | || |
Sbjct 995 CGGAATCAAGAGTGGTTCTATCTTTTTCGTCGACGATAGTGGTCTT-CGGG--CA----G 1047
Query 1046 ATCATGATCGTCGTGT-TTC-GAATTGCGGTGTCTTCAATATTGCCACAAGTAAGA-TCA 1102
| | | ||||| || | ||| || ||||||| |||| ||||||||||||||| || | |
Sbjct 1048 A-C-T-ATCGTTGT-TATTCAGA-TTGCGGTATCTTTGATATTGCCACAAGTA-GAATTA 1101
Query 1103 AATGGCCTA 1111
|||||||||
Sbjct 1102 AATGGCCTA 1110
> Ahg936152 jgi|Araly1|936152|scaffold_500343.1
Length=1216
Score = 178 bits (96), Expect = 9e-44
Identities = 432/583 (74%), Gaps = 68/583 (12%)
Strand=Plus/Plus
Query 477 AGCTGTTCTATGGATAAACGAGACA-ACAGGAGATTATGTCGTTGCTTGGACATTCATAC 535
||||||||| ||||||||||||| | || || |||||||| |||||||||| || | ||
Sbjct 617 AGCTGTTCTGTGGATAAACGAGA-AGACGGGTGATTATGTGGTTGCTTGGATTTTTAAAC 675
Query 536 AGCATTACTTGTTCTTC-TACAAGTCA-G-GAT--AT--TGGT----CTTGGTGTAAT-- 582
|||||||||||||| | |||||| | | ||| || |||| | ||| ||||
Sbjct 676 AGCATTACTTGTTC-ACATACAAGAAAGGAGATGAATCATGGTGGAAC-TGGAATAATAA 733
Query 583 CT-G-AA-TC-AT-AATG--G-GAAAAGTTT-GGTTGTGTTTGATATGGCATGTGAGAAC 633
|| | || || | || | | | ||| ||| |||| | || ||| |||| | ||| |||
Sbjct 734 CTGGAAATTCGGTCAAGGACGCGTAAA-TTTGGGTTAT-TTGGATTTGGCTTATGAAAAC 791
Query 634 AATAAGCTTTATCTGTACAC-AGCTAATCATCATATCAGGATTTTTGATTTCTCTGGAGC 692
| ||||||||||| || || | | || ||| |||| |||| | ||||||||||||
Sbjct 792 AGCAAGCTTTATCTCTATACTA-CCGATGGTCACATCAAGATTATCAATTTCTCTGGAGA 850
Query 693 TTAT-CCTATGGAAAAGAAAACCG--AA-AACCCGTAT-TGGAAAT-AT-CTGTTTAACG 745
|| | |||| || ||| ||| || || ||||||||| ||| || || || ||||||
Sbjct 851 TT-TCCCTAAGG--AAG-AAATCGAAAATAACCCGTATCTGG--ATCATCCT-TTTAACT 903
Query 746 CGGTTGAGGAACCG-TGGGAA--TACGTTTGGAAGAGGAAAATAGCGATTCAGAAATCAT 802
| | | | | | |||| || ||| || ||||| |||||| |||||| || ||
Sbjct 904 ATGCT-CCGCATGGATTGGAACTTA--TTTCGAGGAGGAGAATAGCCATTCAG-AA--AT 957
Query 803 CAGGTGAGGTTTTGATCATCTTGAGCCTTA-AACAAGT--G-TTTTACGAAGCAGAGAGA 858
|||| ||||||||||||||| |||| ||| | |||| | || | ||| |||| |
Sbjct 958 CAGGAGAGGTTTTGATCATCGTGAG-TTTATTAGAAGTACGAATTGATGAA--AGAG-CA 1013
Query 859 CTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTTTCAAGTGGGAAAGAGTTTATTCT 918
|||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||
Sbjct 1014 CTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAAATGGGAAAGAGAGCATTCT 1073
Query 919 CTTGGAGATGA-GATGTTGGT--T-TTTGGTCAAGGTGTTACAATACCTA-CTGCTCTTA 973
|||||||||| || | || | | |||||||| || ||||||||| | | | ||
Sbjct 1074 ATTGGAGATGATGA-GATGATAATATTTGGTCATGGGGTTACAATAAG-AGCACCGGTTC 1131
Query 974 AAGATCTTGGTGATGGAATCAAGAGTGATTCAATCTATTTCGT 1016
||||| |||||||||||||||||| || |||||||| ||||||
Sbjct 1132 AAGATGTTGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGT 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43650739965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5