BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04842.1
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319286 jgi|Araly1|319286|fgenesh1_pm.C_scaffold_3002302 3181 0.0
> Ahg319286 jgi|Araly1|319286|fgenesh1_pm.C_scaffold_3002302
Length=1953
Score = 3181 bits (1722), Expect = 0.0
Identities = 1878/1955 (96%), Gaps = 4/1955 (0%)
Strand=Plus/Plus
Query 1 ATGGcctcttctcattctcttctcttttcttcttccttcctctctaaaccctcttctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCTCTTCTCATTCTCTTCTCTTTTCTTCTTCCTTCCTCTCTAAACCCTCTTCTTTC 60
Query 61 acttcttctctGAGACGGTTTGTTTACCTTCCCACTCGCCAATTTTGGCCAAGGCAGCGA 120
|||||||||||||||||||| |||||||||||| |||||| ||| |||||||||||||||
Sbjct 61 ACTTCTTCTCTGAGACGGTTCGTTTACCTTCCCTCTCGCCGATTCTGGCCAAGGCAGCGA 120
Query 121 CATGGTTTCTCTACCGTCTTCGCCGTCGCCACCGAGCCAGCTATCTCCAGCAGCGGTCCT 180
||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 121 CATGGGTTCTCCACCGTCTTCGCCGTCGCCACCGAGCCAGCTATCTCCAACACCGGGCCT 180
Query 181 AAGAAAG-CAGAGCCATCGACGGTCGTGCTTCCTAGTAATGAATCATCTGATAAGCTTCT 239
||| ||| |||||||||| || ||||| |||||||||||||||||||| |||||||| ||
Sbjct 181 AAG-AAGACAGAGCCATCAACTGTCGTACTTCCTAGTAATGAATCATCCGATAAGCTGCT 239
Query 240 CAAAATTCGACACACGTGTGCGCATGTAATGGCAATGGCAGTTCAGAAACTCTTCCCGGA 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAAATTCGTCACACGTGTGCGCATGTAATGGCAATGGCAGTTCAGAAACTCTTCCCGGA 299
Query 300 TGCAAAAGTGACGATAGGTCCTTGGATTGATAATGGTTTCTACTATGATTTTGATATGGA 359
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 TGCGAAAGTGACGATAGGTCCTTGGATTGATAATGGTTTCTATTATGATTTTGATATGGA 359
Query 360 GCCTTTAACAGATAAAGACCTTAAGAGGATCAAGAAAGAGATGGATCGTATCATTAGTCG 419
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 360 GCCTTTAACAGATAAAGACCTCAAGAGAATCAAGAAAGAGATGGATCGTATTATTAGTCG 419
Query 420 GAATTTACCACTTTTAAGAGAAGAAGTATCTAGAGAAGAAGCGAAGAAAAGGATCATGGC 479
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 420 GAATTTACCACTTTTAAGAGAGGAGGTTTCTAGAGAAGAAGCGAAGAAAAGGATCATGGC 479
Query 480 GATAAATGAGCCTTATAAGATGGAGATTTTGGATGGTATTAAGGAAGAACCCATCACCGT 539
||||||||||||||||||||||||||||||||| ||||| ||||||||||| || || ||
Sbjct 480 GATAAATGAGCCTTATAAGATGGAGATTTTGGAGGGTATCAAGGAAGAACCTATTACAGT 539
Query 540 TTATCATATCGGTAATGAATGGTGGGATCTTTGTGCGGGTCCTCATGTCGAGACCACAGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTATCATATCGGTAATGAATGGTGGGATCTTTGTGCGGGTCCTCATGTCGAGACCACAGG 599
Query 600 GAAGATAAACAAGAAAGCAGTTGAACTAGAATCTGTTGCTGGTGCATACTGGAGAGGAGA 659
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAAGATAAACAAGAAAGCAGTGGAACTAGAATCTGTTGCTGGTGCATACTGGAGAGGAGA 659
Query 660 TGAAAAGAGGCAAATGCTTCAGAGGATATACGGAACAGCTTGGGAGAGCGAAGAGCAACT 719
|||||||||||||||||||||| | ||||| ||||||||||||||||| ||||| |||||
Sbjct 660 TGAAAAGAGGCAAATGCTTCAGCGAATATATGGAACAGCTTGGGAGAGTGAAGAACAACT 719
Query 720 GAAAGCATATCTTCATTTTAAAGAAGAAGCTAAACGCAGGGATCATAGACGCATCGGCCA 779
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 720 AAAAGCATATCTTCATTTTAAAGAAGAAGCTAAACGCAGGGATCACAGACGGATTGGCCA 779
Query 780 AGACCTTGATC-TGTTTTCTATCCAGGATGAAGCTGGAGGAGGGTTAGTGTTTTGGCATC 838
|||||| || | ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGACCTCGA-CTTGTTTTCCATCCAGGATGAAGCTGGAGGAGGGTTAGTGTTTTGGCATC 838
Query 839 CGAAAGGTGCAATTGTTAGAAACATAATTGAAGAATCGTGGAAGAAAATGCATGTTGAAC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGAAAGGTGCAATTGTTAGAAACATAATTGAAGAATCGTGGAAGAAAATGCATGTTGAAC 898
Query 899 ATGGTTATGATTTGATCTATACTCCTCATGTTGCCAAAGCTGACCTGTGGAAGATCAGTG 958
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGGTTATGATTTGATCTATACCCCTCATGTTGCCAAAGCTGACCTGTGGAAGATCAGTG 958
Query 959 GTCACTTGGACTTCTACAGAGAGAATATGTATGATCAAATGGAGATCGAGGATGAGCTTT 1018
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 959 GTCACATGGACTTCTACAGAGAGAATATGTATGATCAAATGGAGATCGAGGACGAGCTTT 1018
Query 1019 ATCAACTCCGACCAATGAATTGCCCTTACCACATCTTGCTTTACCAAAGAAAGCGTCAAT 1078
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATCAACTTCGACCCATGAATTGCCCTTACCACATCTTGCTTTACCAAAGAAAGCGTCAAT 1078
Query 1079 CATATCGAGATTTGCCCATAAGAGTTGCAGAGCTCGGTACAGTTTACAGATATGAGTTGT 1138
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1079 CATATCGAGATTTGCCCATTAGAGTTGCAGAGCTTGGTACAGTTTACAGATATGAGTTGT 1138
Query 1139 CTGGTAGCTTGCACGGTCTCTTCCGTGTCAGAGGGTTCACACAGGACGATGCACACATAT 1198
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTGGTAGCTTACACGGCCTCTTCCGTGTCAGAGGGTTCACACAGGACGATGCACACATAT 1198
Query 1199 TTTGTTTAGAGGATCAGATCAAAGATGAGATCAGAGGTGTTCTAGATCTCACAGAAGAGA 1258
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 TTTGTTTAGAAGATCAGATCAAAGATGAGATCAGAGGTGTCCTAGATCTCACAGAAGAGA 1258
Query 1259 TATTGTCGAGGTTTGGATTCAACAAGTATGAGGTTAACTTATCAACTAGACCTGAAAAAT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TATTGTCGAGGTTTGGATTCAACAAGTATGAGGTTAACTTATCAACTAGACCTGAAAAAT 1318
Query 1319 CAGTTGGAGGTGATGATATATGGGAGAAGGCGACCTGTGCCCTTAGAGATGCTTTAGATG 1378
|||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||| |||
Sbjct 1319 CAGTTGGAGGTGATGACATATGGGAAAAGGCGACGTGTGCCCTTAGGGATGCTTTAAATG 1378
Query 1379 ATAAGGGATGGAGCTATGAGGTTGACGAAGGAGGTGGCGCCTTTTACGGCCCAAAGATCG 1438
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1379 ATAAAGGATGGAGCTATGAGGTTGATGAAGGAGGTGGCGCCTTTTACGGCCCAAAGATCG 1438
Query 1439 ACCTTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGGTCGACT 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 ACCTTAAGATTGAAGATGCATTGGGTAGAAAATGGCAGTGCTCAACTATTCAGGTCGACT 1498
Query 1499 TCAATCTTCCTCAGAGATTTGACATTACCTATGTAGACACAAACTCAGATAAGAAACGTC 1558
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1499 TCAATCTTCCTCAGCGATTTGACATTACTTATGTAGACACAAACTCAGATAAGAAACGTC 1558
Query 1559 CTATAATGATCCACAGAGCGGTTTTAGGATCATTAGAAAGATTTTTCGGTGTTCTCATAG 1618
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1559 CTATAATGATACACAGAGCGGTTTTGGGATCATTAGAAAGGTTTTTCGGTGTTCTCATAG 1618
Query 1619 AACACTACGCAGGGGATTTCCCGTTATGGCTCTCTCCTGTTCAAGTCCGGGTCTTACCTG 1678
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 1619 AACACTACGCAGGGGATTTCCCGTTGTGGCTCTCTCCTATTCAAGTCCGGGTCTTACCCG 1678
Query 1679 TCACAGACAATCAGTTGGAGTTTTGTAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAG 1738
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1679 TCACAGACAATCAGTTGGAGTTCTGCAAGGAAGTGAGTAAGAAACTGAGAGCTTGTGGAG 1738
Query 1739 TGAGGGCTGAGTTGTGCCATGGGGAGAGACTGCCTAAGCTCATAAGGAACGCAGAGACGC 1798
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1739 TGAGGGCTGAGTTGTGCCATGGGGAGAGATTGCCGAAGCTCATAAGGAACGCAGAGACGC 1798
Query 1799 AGAAGATCCCGTTAATGGCGGTTGTTGGACCCAAAGAAGTCGAGACCGGAACTGTTACCG 1858
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1799 AGAAGATCCCGTTAATGGCGGTTGTTGGACCCAAAGAAGTCGAAACTGGAACTGTTACCG 1858
Query 1859 TTAGATCGAGGTTTGGAGGAGAGCTTGGAACCATTCCTGTTGATGACCTCATCAACAAAA 1918
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1859 TTAGATCGAGGTTTGGAGGAGAGCTTGGAACCATTCCTGTTGATGACTTCATCAACAAAA 1918
Query 1919 TCAACATTGCAGTTGAAACCAGAACTGCTCTGTAA 1953
|||||||||||||||||||||||||||||||||||
Sbjct 1919 TCAACATTGCAGTTGAAACCAGAACTGCTCTGTAA 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73399902115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5