BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04850.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480117 jgi|Araly1|480117|fgenesh2_kg.3__2818__AT2G04850.1 2148 0.0
> Ahg480117 jgi|Araly1|480117|fgenesh2_kg.3__2818__AT2G04850.1
Length=1397
Score = 2148 bits (1163), Expect = 0.0
Identities = 1325/1403 (94%), Gaps = 11/1403 (1%)
Strand=Plus/Plus
Query 1 AGAGATGATCAAACAATGGCGACTTTGATTCTATCATTCTTGCTTCTTCTTCTAGCAACA 60
||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct 1 AGAGATGATCAAACAATGGCGACTTTGATTCTAACATTCTTG--T-TTCTTCTAGCAACA 57
Query 61 AAGCTT-CCTGAATCACTAGCTGGTCACTGCACCACCACGACGGCGACGAAAAGCTTCGA 119
|||||| || | || || || || |||||||||||||||||||| ||||||||||||||
Sbjct 58 AAGCTTCCCAG-CTCTCTCGCGGGGCACTGCACCACCACGACGGCAACGAAAAGCTTCGA 116
Query 120 GAAATGTATCTCTCTTCCAACACAACAAGCGTCAATCGCGTGGACATACCATCCACACAA 179
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GAAATGCATCTCTCTTCCGACACAACAAGCGTCAATCGCGTGGACATACCATCCACACAA 176
Query 180 CGCTACTCTCGACCTTTGTTTCTTTGGAACTTTCATCTCACCTTCCGGGTGGGTTGGATG 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CGGTACTCTCGACCTTTGTTTCTTTGGAACTTTCATCTCACCTTCCGGGTGGGTTGGATG 236
Query 240 GGGGATTAACCCGGATTCCCCGGCGCAGATGACTGGTTCTCGTGTCCTCATCGCCTTTCC 299
|||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 237 GGGGATTAACCCGGATTCTCCGGCACAGATGACTGGCTCTCGTGTCCTGATCGCCTTTCC 296
Query 300 AGATCCGAATTCTGGTCAGCTCATCCTCCTTCCTTACGTTCTTGACTCTTCAGTCAAGCT 359
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 GGATCCAAATTCTGGTCAGCTCATTCTCCTTCCTTACGTTCTTGACTCTTCAGTCAAGCT 356
Query 360 TCAGAAAGGTCCTCTGCTTTCCCGTCCGCTTGACCTTGTCCGTCTCTCTTCCTCCTCTGC 419
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 357 TCAGAAAGGTCCTCTGCTTTCCCGTCCACTTGACCTTGTCCGTCTCTCTTCCTCTTCTGC 416
Query 420 TTCTCTCTACGGTGGTAAAATGGCCACTATCCGTAATGGTGCTTCCGTTCAGATTTATGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTCTCTCTACGGTGGTAAAATGGCCACTATCCGTAATGGTGCTTCCGTTCAGATTTATGC 476
Query 480 CTCTGTTAAGCTCTCCTCGAACAATACTAAGATCCACCATGTTTGGAACAGAGGTCTTTA 539
|| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 477 ATCCGTTAAGCTCTCGTCGAACAATACCAAGATCCATCATGTTTGGAACAGAGGTCTTTA 536
Query 540 TGTCCAAGGTTACTCTCCCACCATTCATCCTACTACTTCCACCGATCTCTCCTCCTTCTC 599
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 537 TGTCCAAGGTTACTCTCCTACCATTCATCCCACCACTTCCACCGATCTCTCCTCCTTCTC 596
Query 600 CACCTTTGATGTCACTTCAGGATTTGCAACTGTTAATCAAAACAGCGGTTCCCGAGCTTT 659
||| || ||||||||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct 597 CACATTCGATGTCACTTCAGGATTTGCAACAGTTAATCGAAACAGCGGTTCCAGAGCTTT 656
Query 660 AAAAGTGACTCACGGAGTAGTCAACGCGATATCGTGGGGTTTTCTCCTCCCGGCGGGAGC 719
||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct 657 AAAAGTGACTCACGGAGTAATCAACGCGATAGCGTGGGGTTTTCTCCTCCCGGCAGGAGC 716
Query 720 AGTAACAGCTAGATACCTCCGCCAAATGCAATCAATAGGACCCACTTGGTTCTACATCCA 779
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 AGTAACAGCTCGATACCTCCGCCAAATGCAATCAATAGGACCCACTTGGTTCTACATTCA 776
Query 780 CGCAGCAATACAGCTAACCGGTTTCCTCCTAGGAACCATTGGCTTCTCCATTGGAATCGT 839
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 777 CGCAGCAATACAGCTAACCGGTTTCCTCTTAGGAACCATTGGCTTCTCCATTGGAATAGT 836
Query 840 GCTCGGCCATAATTCCCCTGGAGTGACCTATGGGTTACATCGGAGCCTCGGGATAGCTAC 899
||||||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||
Sbjct 837 GCTCGGCCATAATTCCCCTGGCGTGACTTACGGGTTACATCGAAGCCTTGGGATAGCTAC 896
Query 900 TTTCACAGCAGCGGCGCTGCAAACACTGGCTTTGCTGTTCAGACCAAAGACGACCAATAA 959
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 897 GTTCACAGCAGCGGCGCTGCAAACACTGGCTCTGCTGTTCAGACCAAAGACGACCAACAA 956
Query 960 GTTCCGGAGGTACTGGAAGTCTTACCATCATTTTGTCGGGTACGCGTGTGTGGTGATGGG 1019
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 957 GTTTCGGAGATACTGGAAGTCTTACCATCATTTTGTCGGGTACGCGTGTGTGGTAATGGG 1016
Query 1020 CGTGGTGAATGTGTTCCAAGGGTTTGAGGTTTTAAGGGAAGGAAGGTCGTACGCAAAGCT 1079
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1017 TGTGGTGAATGTGTTCCAAGGGTTTGAGGTTTTAAGGGAAGGAAGGTCATATGCGAAGCT 1076
Query 1080 CGGTTACTGTCTATGTCTGTCGACGCTGGTTGGTGTCTGCGTGGCCATGGAAGTTAACTC 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TGGTTACTGTCTATGTCTGTCGACGCTGGTTGGTGTCTGCGTGGCCATGGAAGTTAACTC 1136
Query 1140 GTGGGTTGTGTTTTGTCGAAAGGCTAAAGAGGAGAAGATGAAGAGAGATGGTTTGACCGG 1199
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GTGGGTTGTTTTTTGTCGAAAGGCTAAAGAGGAGAAGATGAAGAGAGATGGTTTGACCGG 1196
Query 1200 TGTCGATAGATGCAGTGGGAGTCATAGTTAGGTCTTGGGTCCTAATTATAAGACAGA-A- 1257
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 1197 TGACGATAGATGCAGTGGGAGTCATAGTTAGGTCTTGTGTCCTAATTATAAGACAAAGAG 1256
Query 1258 AAAGAGACACAATATCATTTATATATCTTTGCTTAGTACCCTCATGTACAATGTA-ACTT 1316
|||||||||| | ||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 1257 AAAGAGACACGAGATCATCTATATATCTTTGCTTAGTACCCTCATGTACAATGTACA-TT 1315
Query 1317 GTTGGTTCAAAGTTGACTTACCTAAAG-TTGTGGATCCATCATTTGCATCATATGTAGAG 1375
||||||||||||||||||||||||||| || ||||||||||| |||||||||| | ||||
Sbjct 1316 GTTGGTTCAAAGTTGACTTACCTAAAGCTT-TGGATCCATCAGTTGCATCATACGGAGAG 1374
Query 1376 CTCAGACGAAGGAGATATCAGCC 1398
|||||| ||||||||||||||||
Sbjct 1375 CTCAGATGAAGGAGATATCAGCC 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5