BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G04890.1
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930812 jgi|Araly1|930812|scaffold_303269.1 2030 0.0
Ahg949213 jgi|Araly1|949213|scaffold_801100.1 244 1e-63
Ahg930813 jgi|Araly1|930813|scaffold_303270.1 187 2e-46
> Ahg930812 jgi|Araly1|930812|scaffold_303269.1
Length=1314
Score = 2030 bits (1099), Expect = 0.0
Identities = 1197/1246 (96%), Gaps = 0/1246 (0%)
Strand=Plus/Plus
Query 427 CAATAATGTTGCAGCCACTGCCAGAGATAGCTGAGAGTATCGATGATGCTATCTGCCATG 486
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 CAATAATGTTGAAGCCATTGCCAGAGATAGCTGAGAGTATCGATGATGCTATCTGCCATG 128
Query 487 AACTCTCCATGTGGCCTGATGATGCTAAAGATTTGTTATTGATAGTGGAGGCAATATCAA 546
||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||
Sbjct 129 AACTCTCCATGTGGCCTGAAGAGGCTAATGATTTGTTGTTGATAGTGGAGGCAATATCAA 188
Query 547 GGGGAGACTTGAAGTTGGTACTTGTTGCTTGTGCAAAAGCTGTTTCTGAGAATAATCTTC 606
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 189 GGGGAGACTTGAAATTGGTACTGGTTGCTTGTGCAAAAGCTGTTTCTGAGAATAATCTTC 248
Query 607 TAATGGCACGATGGTGTATGGGTGAGTTGCGCGGTATGGTTTCGATTTCTGGTGAGCCAA 666
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 249 TGATGGCACGATGGTGTATGGGAGAGTTACGCGGTATGGTTTCGATTTCTGGTGAGCCAA 308
Query 667 TCCAGAGATTGGGAGCTTATATGTTAGAAGGGCTTGTTGCTAGGCTTGCTGCTTCTGGTA 726
||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||
Sbjct 309 TCCAGAGATTGGGAGCTTACATGTTAGAAGGGCTTGTGGCAAGGCTTGCTGCCTCTGGTA 368
Query 727 GTTCGATATATAAGTCTCTCCAGTCCAGAGAACCAGAGAGTTATGAATTTTTATCTTATG 786
|||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 369 GTTCGATATACAAGTCTCTTCAATCCAGAGAACCGGAGAGTTATGAATTTTTATCTTATG 428
Query 787 TGTATGTTCTGCATGAGGTTTGTCCATATTTCAAGTTTGGATACATGTCAGCGAATGGTG 846
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 429 TGTATGTTCTGCATGAGGTTTGCCCATATTTCAAGTTTGGATACATGTCAGCGAATGGTG 488
Query 847 CGATTGCAGAAGCAATGAAGGATGAAGAGAGGATTCACATTATTGACTTCCAAATTGGAC 906
|||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 489 CGATCGCAGAAGCAATGAAGGATGAAGAGAGAATCCACATTATTGACTTCCAAATTGGGC 548
Query 907 AAGGGAGCCAGTGGATAGCACTTATCCAGGCTTTTGCAGCTAGGCCTGGTGGGGCTCCAA 966
|||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 549 AAGGGAGCCAGTGGATTTCACTGATTCAGGCTTTTGCAGCTAGGCCTGGTGGGGCTCCAA 608
Query 967 ATATTCGAATTACCGGAGTTGGTGATGGATCTGTCTTGGTTACAGTCAAGAAGAGACTAG 1026
||||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||| |||
Sbjct 609 ATATTCGAATTACCGGAGTCGGTGATGTATCCGTCTTGGTTACAGTCAAGAAAAGATTAG 668
Query 1027 AGAAACTTGCAAAGAAGTTTGATGTTCCATTCAGGTTCAATGCGGTTTCAAGGCCAAGTT 1086
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 669 AGAAACTTGCAAAGAAGTTTGATGTCCCATTCAGGTTCAATGCGGTTTCAAGGCCAAGTT 728
Query 1087 GTGAAGTTGAAGTGGAAAATCTTGATGTCCGAGATGGCGAAGCCCTTGGAGTGAACTTTG 1146
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 729 GTGAAGTTGAAGTGGAAAATCTTGATGTCCGAGAAGGCGAAGCCCTTGGAGTGAACTTTG 788
Query 1147 CTTACATGCTGCATCATTTGCCAGATGAGAGTGTAAGCATGGAAAACCACAGGGACCGGT 1206
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 CTTACATGCTGCACCATTTGCCAGATGAGAGTGTAAGCATGGAAAACCACAGGGACCGGT 848
Query 1207 TGCTGAGGATGGTGAAGAGTCTATCACCTAAAGTAGTCACTCTTGTGGAACAAGAATGCA 1266
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TGTTGAGGATGGTGAAGAGTCTATCACCTAAAGTAGTCACTCTTGTGGAACAAGAATGCA 908
Query 1267 ACACGAACACTTCCCCTTTCCTTCCTAGGTTCCTTGAGACATTAAGTTATTACACGGCAA 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 909 ACACGAACACTTCCCCTTTCCTTCCTAGGTTCCTTGAGACATTAAGTTATTACACAGCAA 968
Query 1327 TGTTCGAATCTATCGATGTTATGCTTCCGAGAAATCACAAGGAAAGGATCAATATCGAGC 1386
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 969 TGTTTGAATCTATCGATGTGATGCTTCCGAGAAACCACAAGGAAAGGATCAATATCGAGC 1028
Query 1387 AGCACTGCATGGCAAGGGATGTCGTCAACATCATAGCTTGTGAAGGAGCCGAGAGGATCG 1446
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1029 AGCACTGCTTGGCAAGGGATGTCGTCAACATCATAGCTTGTGAAGGAGCTGAGAGGATTG 1088
Query 1447 AAAGACACGAGCTTCTCGGGAAATGGAAGTCAAGGTTTTCCATGGCGGGTTTTGAGCCAT 1506
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1089 AAAGACACGAGCTTCTCGGAAAATGGAAGTCAAGGTTTTCCATGGCAGGTTTTGAGCCAT 1148
Query 1507 ACCCCTTGAGCTCAATCATTTCAGCCACCATTAGAGCCCTCTTGAGAGATTACAGCAACG 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 ACCCCTTGAGCTCAATCATTTCAGCCACCATTAGAGCCCTCTTGAGAGATTACAGCAACG 1208
Query 1567 GGTATGCGATTGAAGAAAGAGATGGTGCTCTGTACCTTGGTTGGATGGACCGAATCTTGG 1626
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1209 GGTATGCGATTGAAGAAAGAGATGGTGCTCTGTACCTTGGTTGGATGGACAGAATCTTGG 1268
Query 1627 TCTCATCTTGTGCATGGAAGTGAAAGAATAAACGTCTCCAAGAATG 1672
|||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1269 TCTCATCTTGTGCATGGAAGTGAAAGAATAAATGTCTCCGAGAATG 1314
> Ahg949213 jgi|Araly1|949213|scaffold_801100.1
Length=1513
Score = 244 bits (132), Expect = 1e-63
Identities = 825/1146 (72%), Gaps = 102/1146 (9%)
Strand=Plus/Plus
Query 567 CTTGTTGCTTGTGCAAAAGCTGTTTCTGAGAATAATCTTCTAATGGCACGA-T-GGTGTA 624
|||||| | ||||| |||||| | || || ||| ||||| | ||||| | | | | || |
Sbjct 387 CTTGTTTCATGTGCGAAAGCTATGTCGGAAAATGATCTTATGATGGCTC-ATTCGATG-A 444
Query 625 TGGGTG-AGTTGC-GCGGTATGGTTTCGATTTCTGGTGAGCCAATCCAGA-GATTGGGAG 681
| || | |||| | || | ||||| ||| ||||||||||||| ||||| | | |||||||
Sbjct 445 T-GGAGAAGTTACGGCAG-ATGGTATCGGTTTCTGGTGAGCCTATCCA-ACGGTTGGGAG 501
Query 682 CTTA-TATGTTAGAAGGGCTTGTTGC-TAGGCTT-GCTGCTTCTGGTAGTTCGATATA-T 737
|||| | | || ||||| || || || | | || ||| | || |||||||| |||||
Sbjct 502 CTTACT-TATTGGAAGGTCTAGTGGCGCA-G-TTAGCTTCATCGGGTAGTTCCATATACA 558
Query 738 AAGTCTC-T--CCAGT-CCAGAGAACCAGAGAGTTA-TGAATTTTTATCTTATGTGTATG 792
||| | | | ||| || ||||| | || | || || | ||||| || |
Sbjct 559 AAG-CACTTAATAAGTGCC-CTGAACCGGCTAG-CACCGAGCTTCTCTCTTACATGCACA 615
Query 793 TTCTGC-ATGAGGTTTGTCCATATTTCAAGTTTGGATACATGTCAGCGAATGGTGCGATT 851
|||| | ||||||| ||||| || |||||||| |||||||||||||| |||||||| |||
Sbjct 616 TTCT-CTATGAGGTCTGTCCTTACTTCAAGTTCGGATACATGTCAGCAAATGGTGCTATT 674
Query 852 GCAGAAGCAATGAAGGATGAAGAGAGGA-TTCACATTATTGACTTCCAAATTGGACAAGG 910
|| ||||| ||||| || ||| | | || |||||||||| || |||||||| || |||||
Sbjct 675 GCTGAAGCCATGAAAGAAGAAAACA-GAGTTCACATTATCGATTTCCAAATCGGTCAAGG 733
Query 911 GAGCCAGTGGAT-AGCACTTATCCAGGCTTTTGCAGCTAGGCCTGGTGGGGCTCCAAATA 969
||| || ||| | | | ||||||||||||||||||||||||||||||||| | || |
Sbjct 734 GAGTCAATGGGTCA-CTCTTATCCAGGCTTTTGCAGCTAGGCCTGGTGGGCCGCCTCGGA 792
Query 970 TTCGAATTACCGG-AGTTG--G-T--GA-T---G-G-AT-CT-GTCTTGGT----TA--C 1009
||||||| || || | ||| | | || | | | || || || ||| || |
Sbjct 793 TTCGAATAACGGGTA-TTGACGATATGACTTCAGCGTATGCTCGTGGAGGTGGCCTAAGC 851
Query 1010 AGTCAAG-AAG-AGACTAGAGAAACTTGCAAAGAAGTTTGATGTTCCATTC-AGGTTCAA 1066
| | | || ||||| | || ||||| ||| ||||| | ||||||||| || || ||
Sbjct 852 ATTGTTGGAAACAGACTCGCTAAGCTTGCTAAGCAGTTTAACGTTCCATTCGAGTTT-AA 910
Query 1067 -TGCGGTTTCAAG-GCCAAGTTGT--GAAGTTGAAG-TGGAA-AATCTTGATGTCCGAG- 1119
| |||| ||| | | || || || || ||| || | || || || | || |||
Sbjct 911 CT-CGGTATCA-GTGTCA-GT-GTCCGAGGTTAAACCT--AAGAACCTCGGGGTTCGACC 964
Query 1120 ATGGCGAAGCCCTTGGAGTGAACTTTGC-TTACATGCTGCATCATTTGCCAGATGAGAGT 1178
| || ||||| || | || |||||||| || |||| |||||| ||||||| || ||
Sbjct 965 AGGG-GAAGCTCTAGCCGTCAACTTTGCCTTTG-TGCTTCATCATATGCCAGACGAAAGC 1022
Query 1179 GTAAGCATGGAAAACCACAGGGACCGGTTGCTGAGGATGGTGAAGAGTCT-ATCACCTAA 1237
|| |||| || || ||| | |||||||| ||||| ||||||||||| || ||| || ||
Sbjct 1023 GTGAGCACCGAGAATCACCGCGACCGGTTACTGAGAATGGTGAAGAG-CTTATCTCCCAA 1081
Query 1238 AGTAGTCACTCTTGTGGAACAAGAATGCAA-CACGAACACTTCCCCTTTCCTTCCT-AGG 1295
|| || ||||| || || ||||||| ||| ||| ||||| | ||||| |||| |||
Sbjct 1082 GGTGGTGACTCTGGTTGAGCAAGAAT-CAAACACAAACACGGCGGCTTTC-TTCCCGAGG 1139
Query 1296 TTCCTTGAGACATT-AAGTTATTACACGGCAATGTTCGAATCTATCGATGTTA-TGCTTC 1353
||| | || ||| | || | | || | || ||||| || || || ||||| | | || |
Sbjct 1140 TTCATGGAAACAATGAACT-ACTATGCCGCGATGTTTGAGTCAATTGATGTGACT-CTCC 1197
Query 1354 CGAGAAATCACAAGGAAAGGATCAATATCGAGCAGCACTG-CATGGCAAGGGATGTCGTC 1412
| ||| ||||||| | ||||| ||| | |||||||| || | | || || || |||||
Sbjct 1198 CAAGAGATCACAAACAGAGGATTAATGTAGAGCAGCATTGTC-TAGCCAGAGACGTCGTG 1256
Query 1413 AACATCATAGCTTGTGAAGGAGCCGAGAG-GATCGAAAGACACGAGCTTCTCGGGAAATG 1471
|||||||| || ||||||||||| || | | | || ||||||||||||| ||||||||
Sbjct 1257 AACATCATCGCATGTGAAGGAGCTGATCGTG-TGGAGCGACACGAGCTTCTAGGGAAATG 1315
Query 1472 GAAGTCAAGGTTTTCCATGGCGGGTTTTGAG-CCATACCCCTTGAGCTCAATCATTTCAG 1530
|| |||| ||||| ||||| ||||| | || ||||| |||||| | | | |
Sbjct 1316 GAGGTCACGGTTTGGGATGGCTGGTTTC-ACTCCTTACCCGTTGAGCCCCTTGGTGA-AT 1373
Query 1531 CCA-CCATTAGA-GCCCT-CTTGAGAGAT-TACA-GCAACGGGTAT-GCGATTGAAGAAA 1584
|| |||||| | | | | || ||| || ||| | | | ||| | | | |||||||
Sbjct 1374 TCAACCATTAAAAGTC-TACT-GAG-GAACTACTCGGA-CAAGTACAG-GCTAGAAGAAA 1428
Query 1585 GAGATGGTGCTCTGTACCTTGGTTGGATGGACCGA-ATCTTGGTCTCATCTTGTGCATGG 1643
||||||| ||| |||| |||||||||||| | ||| || |||||| | || ||||| |||
Sbjct 1429 GAGATGGAGCTTTGTATCTTGGTTGGATGCATCGAGAT-TTGGTCGCCTCGTGTGCGTGG 1487
Query 1644 AAGTGA 1649
|| |||
Sbjct 1488 AAATGA 1493
> Ahg930813 jgi|Araly1|930813|scaffold_303270.1
Length=430
Score = 187 bits (101), Expect = 2e-46
Identities = 111/116 (96%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 13 ACCGGAAATAGCGGCGACTTTGTGCCACATCCGAGGATCCATCGATCGTCGTCCTCTGAT 72
|||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 116 ACCGGAAATAGCTGCGACTTTGTGCCATATCCGAGGATCCATCGATCGTCTTCCTCTGAT 57
Query 73 GTCTCTTAGATTGCTTCTTACACTATTTCCCATTTGACCAGAGACTTTAAGCGAGA 128
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 56 GTCTCTTAGATTGCTTCTTACACAATTTCCCATTTGACCAGAGACTTTAAGAGAGA 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69971780065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5