BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G04900.1

Length=631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930813 jgi|Araly1|930813|scaffold_303270.1                        713    0.0  


> Ahg930813 jgi|Araly1|930813|scaffold_303270.1
Length=430

 Score =  713 bits (386),  Expect = 0.0
 Identities = 413/426 (97%), Gaps = 2/426 (0%)
 Strand=Plus/Plus

Query  2    CTTAAAGTCTCTGGTCAAATGGGAAATAGTGTAAGAAGCAATCTAAGAGACATCAGAGGA  61
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  6    CTTAAAGTCTCTGGTCAAATGGGAAATTGTGTAAGAAGCAATCTAAGAGACATCAGAGGA  65

Query  62   CGACGATCGATGGATCCTCGGATGTGGCACAAAGTCGCCGCTATTTCCGGTATGGCTGCT  121
             |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  66   AGACGATCGATGGATCCTCGGATATGGCACAAAGTCGCAGCTATTTCCGGTATGGCTGCT  125

Query  122  CTTGGTTTGGGAACTTATGGTGCTCATGTCTTTAAACCAGAGAACCCTTCTTACAAACAG  181
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  126  CTTGGTTTGGGAACTTATGGCGCTCATGTCTTTAAACCAGAAAACCCTTCTTACAAACAG  185

Query  182  GTGTGGCAAACGGCTTCACTTTACCATTTGGTTCACACTGCTGCTCTTGTTTCTGCTCCT  241
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  186  GTGTGGCAAACGGCTTCTCTTTACCATTTGGTTCACACTGCTGCTCTTGTTTCTGCTCCT  245

Query  242  AGCACCAAATATCCCAACATTTTTGGTGGCTTGTTGACTGCTGGAATTGTAGCCTTTTCC  301
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  246  AGCACCAAATATCCCAACATTTTTGGTGGCTTGTTGACTGCTGGGATTGTAGCCTTTTCC  305

Query  302  GGCACGTGTTATATGGTAGCGCTGCGGGAGGACAGAAAGTTTTCGACATTGGCACCATTC  361
            |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct  306  GGCACGTGTTATATGGTAGCGCTGCGTGAGGACAGAAAGTTTTCTACCTTGGCACCATTC  365

Query  362  GGAGGCTTTGCGTTCATTGCTGCATGGGCAACTTTACTTTTCTAAACAATCTCATA-ACC  420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct  366  GGAGGCTTTGCGTTCATTGCTGCATGGGCAACTTTACTTTTCTAAACAATCTCA-AGACC  424

Query  421  ATCTAT  426
            ||||||
Sbjct  425  ATCTAT  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23102487702


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5